Wall clock time and date at job start Mon Mar 30 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46892 * 110.99918 * 2 1 4 4 C 1.53000 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46793 * 304.99914 * 4 3 2 6 6 C 1.52992 * 109.47200 * 64.99725 * 4 3 2 7 7 C 1.50699 * 109.47137 * 185.00374 * 4 3 2 8 8 O 1.21278 * 120.00247 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99680 * 180.02562 * 7 4 3 10 10 C 1.39238 * 120.00124 * 175.70640 * 9 7 4 11 11 C 1.39483 * 119.83390 * 215.01733 * 10 9 7 12 12 C 1.36377 * 120.16597 * 179.75384 * 11 10 9 13 13 C 1.40865 * 119.82838 * 0.51652 * 12 11 10 14 14 C 1.41159 * 120.15973 * 179.71478 * 13 12 11 15 15 H 1.07994 * 119.99668 * 214.79121 * 14 13 12 16 16 C 1.39904 * 119.99763 * 34.80487 * 14 13 12 17 17 N 1.30872 * 120.00481 * 355.55992 * 16 14 13 18 18 Si 1.86806 * 119.99670 * 175.57189 * 16 14 13 19 19 H 1.48497 * 109.47167 * 89.99273 * 18 16 14 20 20 H 1.48498 * 109.46837 * 209.99555 * 18 16 14 21 21 H 1.48501 * 109.46712 * 329.98812 * 18 16 14 22 22 C 1.40865 * 119.67604 * 359.73832 * 13 12 11 23 23 C 1.36375 * 119.82586 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46728 * 299.99495 * 1 2 3 26 26 H 1.08997 * 109.47586 * 59.99683 * 1 2 3 27 27 H 1.00898 * 111.00029 * 123.95436 * 2 1 3 28 28 H 1.09003 * 109.47175 * 59.99857 * 3 2 1 29 29 H 1.09002 * 109.47291 * 300.00299 * 3 2 1 30 30 H 1.09005 * 109.47316 * 300.00701 * 6 4 3 31 31 H 1.09005 * 109.47189 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47011 * 60.00524 * 6 4 3 33 33 H 0.97001 * 120.00091 * 355.69490 * 9 7 4 34 34 H 1.08004 * 119.91102 * 0.02562 * 11 10 9 35 35 H 1.07996 * 120.08031 * 180.25425 * 12 11 10 36 36 H 0.96995 * 119.99981 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.09065 * 179.97438 * 22 13 12 38 38 H 1.08007 * 119.91755 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8727 0.7315 0.8410 6 6 4.0179 0.7078 -1.3082 7 6 4.0648 2.7321 0.1233 8 8 3.3015 3.6711 0.2037 9 7 5.3960 2.9421 0.1437 10 6 5.8956 4.2415 0.1680 11 6 7.0786 4.5428 -0.5067 12 6 7.5714 5.8143 -0.4916 13 6 6.8882 6.8222 0.2168 14 6 7.3952 8.1393 0.2421 15 1 7.2797 8.7454 1.1285 16 6 8.0470 8.6596 -0.8812 17 7 8.2638 7.8981 -1.9232 18 14 8.6082 10.4413 -0.8934 19 1 9.9909 10.5285 -0.3588 20 1 8.5820 10.9589 -2.2850 21 1 7.6977 11.2529 -0.0463 22 6 5.6969 6.5090 0.9002 23 6 5.2133 5.2342 0.8711 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 1.6459 1.8947 0.8900 29 1 1.6459 1.8948 -0.8900 30 1 3.6273 -0.3059 -1.3978 31 1 5.1076 0.6784 -1.3085 32 1 3.6702 1.3069 -2.1498 33 1 6.0060 2.1879 0.1417 34 1 7.6033 3.7680 -1.0461 35 1 8.4853 6.0470 -1.0179 36 1 8.7160 8.2588 -2.7018 37 1 5.1679 7.2764 1.4458 38 1 4.3002 4.9924 1.3949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092133516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:24 Heat of formation + Delta-G solvation = -22.461349 kcal Electronic energy + Delta-G solvation = -19049.391886 eV Core-core repulsion = 16084.055828 eV Total energy + Delta-G solvation = -2965.336058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89884 -37.54896 -36.36063 -34.41886 -33.23747 -32.44024 -29.56973 -28.81295 -26.90323 -25.33654 -24.22570 -22.50101 -21.27693 -20.52653 -19.35072 -17.36445 -16.93485 -16.34966 -15.85594 -15.21949 -15.10375 -14.59669 -14.28019 -13.92739 -13.43982 -13.11915 -12.87610 -12.66624 -12.42837 -12.16670 -12.01315 -11.83407 -11.70041 -11.35003 -11.26756 -11.11889 -10.98383 -10.94923 -10.70561 -9.98448 -9.47899 -9.40003 -9.06127 -8.83572 -8.64160 -7.53686 -6.85014 -6.60704 -4.33273 2.57006 3.03380 3.09182 3.10796 3.14809 3.34006 3.62227 3.98834 4.27252 4.70777 4.70894 4.94567 5.07873 5.19002 5.27924 5.42098 5.66317 5.67234 5.70437 5.72349 5.88027 6.04084 6.20519 6.22942 6.45695 6.74804 6.77516 6.93557 7.08035 7.14506 7.22477 7.31043 7.64899 7.76376 7.88560 8.07419 8.28309 8.32919 8.63625 8.77525 8.93860 9.01561 10.30366 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.047875 B = 0.003639 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.715583 B = 7692.943109 C = 7924.451864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.694 5.694 3 C 0.076 3.924 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.134 4.134 7 C 0.503 3.497 8 O -0.534 6.534 9 N -0.650 5.650 10 C 0.004 3.996 11 C -0.121 4.121 12 C -0.141 4.141 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.206 4.206 23 C -0.086 4.086 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.338 0.662 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.395 0.605 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.277 0.723 37 H 0.095 0.905 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -13.470 2.041 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.325 5.325 3 C -0.053 4.053 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.192 4.192 7 C 0.289 3.711 8 O -0.410 6.410 9 N -0.292 5.292 10 C -0.088 4.088 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.097 3.903 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.440 5.440 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.106 4.106 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.615 -12.855 1.155 14.503 hybrid contribution 0.345 0.712 0.712 1.064 sum -6.269 -12.143 1.866 13.792 Atomic orbital electron populations 1.22170 0.87673 1.01619 1.00672 1.60405 1.07852 1.14534 1.49665 1.21750 0.92537 0.88783 1.02230 1.21228 0.96488 0.94255 1.00876 0.89104 1.21670 1.00454 1.01677 0.95362 1.20497 0.82659 0.90763 0.77189 1.90680 1.57162 1.44139 1.49068 1.42998 1.06350 1.07665 1.72235 1.17294 0.99479 0.83916 1.08137 1.20323 0.96451 0.97271 1.00080 1.21194 1.01440 0.90306 1.03182 1.17721 0.89505 0.93075 0.90006 1.19493 1.31768 0.98188 0.99774 0.90645 1.25876 0.93555 1.00076 0.95043 1.69760 1.32911 1.36771 1.04513 0.86198 0.79531 0.82023 0.78224 1.19537 1.20311 1.18745 1.20806 0.97977 0.95415 1.08360 1.20392 0.98858 0.93095 0.98284 0.91513 0.95976 0.91608 0.84499 0.94151 0.90143 0.90649 0.92637 0.92306 0.77109 0.89086 0.85032 0.91162 0.88640 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.89 16 2 N -0.69 -6.76 6.31 -121.13 -0.76 -7.52 16 3 C 0.08 0.94 4.42 -3.83 -0.02 0.92 16 4 C -0.11 -1.29 2.86 -91.78 -0.26 -1.56 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.13 -1.46 8.98 37.15 0.33 -1.12 16 7 C 0.50 8.68 6.99 -10.98 -0.08 8.61 16 8 O -0.53 -11.49 13.34 5.56 0.07 -11.41 16 9 N -0.65 -11.39 5.16 -9.74 -0.05 -11.44 16 10 C 0.00 0.09 6.31 -83.57 -0.53 -0.44 16 11 C -0.12 -2.78 9.90 -39.79 -0.39 -3.17 16 12 C -0.14 -3.66 8.61 -39.26 -0.34 -3.99 16 13 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.42 9.02 -37.85 -0.34 -12.76 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 17 N -0.81 -21.29 10.60 55.55 0.59 -20.70 16 18 Si 0.92 19.15 29.56 -169.99 -5.03 14.12 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 23 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.34 2.74 8.82 -39.29 -0.35 2.39 16 28 H 0.04 0.55 7.96 -51.93 -0.41 0.13 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 31 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.40 5.44 8.37 -40.82 -0.34 5.10 16 34 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 36 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.11 2.55 6.22 -52.48 -0.33 2.22 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -30.24 317.44 -8.26 -38.51 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.48 Total: 10.61 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.39 Total: -16.96 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.23 Total: -39.66 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.24 -8.26 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092133516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.047 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds