Wall clock time and date at job start Mon Mar 30 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46892 * 110.99918 * 2 1 4 4 C 1.53000 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46793 * 304.99914 * 4 3 2 6 6 C 1.52992 * 109.47200 * 64.99725 * 4 3 2 7 7 C 1.50699 * 109.47137 * 185.00374 * 4 3 2 8 8 O 1.21278 * 120.00247 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99680 * 180.02562 * 7 4 3 10 10 C 1.39238 * 120.00124 * 175.70640 * 9 7 4 11 11 C 1.39483 * 119.83390 * 215.01733 * 10 9 7 12 12 C 1.36377 * 120.16597 * 179.75384 * 11 10 9 13 13 C 1.40865 * 119.82838 * 0.51652 * 12 11 10 14 14 C 1.41159 * 120.15973 * 179.71478 * 13 12 11 15 15 H 1.07994 * 119.99668 * 214.79121 * 14 13 12 16 16 C 1.39904 * 119.99763 * 34.80487 * 14 13 12 17 17 N 1.30872 * 120.00481 * 355.55992 * 16 14 13 18 18 Si 1.86806 * 119.99670 * 175.57189 * 16 14 13 19 19 H 1.48497 * 109.47167 * 89.99273 * 18 16 14 20 20 H 1.48498 * 109.46837 * 209.99555 * 18 16 14 21 21 H 1.48501 * 109.46712 * 329.98812 * 18 16 14 22 22 C 1.40865 * 119.67604 * 359.73832 * 13 12 11 23 23 C 1.36375 * 119.82586 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46728 * 299.99495 * 1 2 3 26 26 H 1.08997 * 109.47586 * 59.99683 * 1 2 3 27 27 H 1.00898 * 111.00029 * 123.95436 * 2 1 3 28 28 H 1.09003 * 109.47175 * 59.99857 * 3 2 1 29 29 H 1.09002 * 109.47291 * 300.00299 * 3 2 1 30 30 H 1.09005 * 109.47316 * 300.00701 * 6 4 3 31 31 H 1.09005 * 109.47189 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47011 * 60.00524 * 6 4 3 33 33 H 0.97001 * 120.00091 * 355.69490 * 9 7 4 34 34 H 1.08004 * 119.91102 * 0.02562 * 11 10 9 35 35 H 1.07996 * 120.08031 * 180.25425 * 12 11 10 36 36 H 0.96995 * 119.99981 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.09065 * 179.97438 * 22 13 12 38 38 H 1.08007 * 119.91755 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8727 0.7315 0.8410 6 6 4.0179 0.7078 -1.3082 7 6 4.0648 2.7321 0.1233 8 8 3.3015 3.6711 0.2037 9 7 5.3960 2.9421 0.1437 10 6 5.8956 4.2415 0.1680 11 6 7.0786 4.5428 -0.5067 12 6 7.5714 5.8143 -0.4916 13 6 6.8882 6.8222 0.2168 14 6 7.3952 8.1393 0.2421 15 1 7.2797 8.7454 1.1285 16 6 8.0470 8.6596 -0.8812 17 7 8.2638 7.8981 -1.9232 18 14 8.6082 10.4413 -0.8934 19 1 9.9909 10.5285 -0.3588 20 1 8.5820 10.9589 -2.2850 21 1 7.6977 11.2529 -0.0463 22 6 5.6969 6.5090 0.9002 23 6 5.2133 5.2342 0.8711 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 1.6459 1.8947 0.8900 29 1 1.6459 1.8948 -0.8900 30 1 3.6273 -0.3059 -1.3978 31 1 5.1076 0.6784 -1.3085 32 1 3.6702 1.3069 -2.1498 33 1 6.0060 2.1879 0.1417 34 1 7.6033 3.7680 -1.0461 35 1 8.4853 6.0470 -1.0179 36 1 8.7160 8.2588 -2.7018 37 1 5.1679 7.2764 1.4458 38 1 4.3002 4.9924 1.3949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092133516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:24 Heat of formation + Delta-G solvation = -42.666814 kcal Electronic energy + Delta-G solvation = -19050.268061 eV Core-core repulsion = 16084.055828 eV Total energy + Delta-G solvation = -2966.212232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39094 -39.26289 -37.44360 -36.14756 -34.83059 -33.65252 -31.48551 -30.66891 -27.77781 -27.02743 -25.32190 -23.84902 -23.03412 -22.19923 -20.77795 -19.28183 -18.40877 -17.85273 -17.04229 -16.77709 -16.30883 -15.85637 -15.72816 -15.46673 -14.80445 -14.59072 -14.32975 -14.02294 -13.85200 -13.61802 -13.38184 -13.20526 -13.06203 -12.85325 -12.76634 -12.60129 -12.46515 -12.14872 -11.92337 -11.76915 -11.40095 -11.20039 -10.75772 -10.50999 -9.47710 -9.45356 -8.73634 -8.50913 -6.33849 0.78822 1.12624 1.39118 1.44398 1.53160 1.78839 2.23168 2.29648 2.80024 3.34402 3.64585 3.70298 3.92366 4.08243 4.36451 4.41338 4.50558 4.53881 4.59964 4.75463 4.78755 4.93026 5.01800 5.04038 5.10103 5.14152 5.14566 5.33924 5.38879 5.43493 5.68799 5.89887 5.90711 6.02100 6.13303 6.38400 6.46505 6.66497 6.73088 6.96065 6.99356 7.39578 8.41774 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.047875 B = 0.003639 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.715583 B = 7692.943109 C = 7924.451864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.689 5.689 3 C 0.083 3.917 4 C -0.092 4.092 5 H 0.126 0.874 6 C -0.129 4.129 7 C 0.500 3.500 8 O -0.579 6.579 9 N -0.642 5.642 10 C 0.020 3.980 11 C -0.119 4.119 12 C -0.159 4.159 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.841 5.841 18 Si 0.989 3.011 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.222 4.222 23 C -0.099 4.099 24 H 0.088 0.912 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.352 0.648 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.418 0.582 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.285 0.715 37 H 0.094 0.906 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -15.510 1.830 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.047 4.047 4 C -0.113 4.113 5 H 0.144 0.856 6 C -0.187 4.187 7 C 0.289 3.711 8 O -0.459 6.459 9 N -0.286 5.286 10 C -0.073 4.073 11 C -0.139 4.139 12 C -0.179 4.179 13 C 0.065 3.935 14 C -0.529 4.529 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.469 5.469 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.242 4.242 23 C -0.119 4.119 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.256 0.744 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.414 -14.963 0.953 16.308 hybrid contribution 0.175 1.178 0.794 1.431 sum -6.239 -13.785 1.748 15.232 Atomic orbital electron populations 1.22233 0.86919 1.02899 1.00270 1.60374 1.08578 1.12724 1.50362 1.21577 0.92745 0.90010 1.00407 1.21209 0.96077 0.90915 1.03122 0.85603 1.21671 1.01436 1.02063 0.93486 1.21477 0.81919 0.92487 0.75225 1.90669 1.58193 1.46239 1.50755 1.42932 1.07180 1.06471 1.72061 1.17359 0.98519 0.85642 1.05810 1.20580 0.96597 0.97052 0.99628 1.21188 1.01430 0.91486 1.03792 1.18032 0.90371 0.93873 0.91247 1.19719 1.33857 0.98707 1.00665 0.91007 1.26738 0.93065 1.04494 0.94134 1.69820 1.33328 1.38673 1.05082 0.85102 0.79283 0.76187 0.78477 1.18318 1.19389 1.18766 1.20927 0.98097 0.96306 1.08851 1.20512 0.99104 0.93271 0.98990 0.89349 0.96081 0.92393 0.82999 0.95853 0.92387 0.88720 0.91127 0.94217 0.74448 0.85613 0.86266 0.90459 0.88754 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.76 16 2 N -0.69 -11.61 6.31 -537.14 -3.39 -15.00 16 3 C 0.08 1.91 4.42 86.30 0.38 2.29 16 4 C -0.09 -1.97 2.86 -11.54 -0.03 -2.01 16 5 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 6 C -0.13 -2.38 8.98 71.98 0.65 -1.73 16 7 C 0.50 16.48 6.99 87.66 0.61 17.10 16 8 O -0.58 -24.93 13.34 -3.02 -0.04 -24.97 16 9 N -0.64 -21.05 5.16 -303.11 -1.57 -22.62 16 10 C 0.02 0.89 6.31 38.57 0.24 1.13 16 11 C -0.12 -5.34 9.90 22.14 0.22 -5.12 16 12 C -0.16 -8.37 8.61 22.48 0.19 -8.18 16 13 C 0.07 3.76 5.55 -21.28 -0.12 3.64 16 14 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 15 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 16 C 0.03 1.43 5.42 85.24 0.46 1.89 16 17 N -0.84 -44.82 10.60 21.82 0.23 -44.58 16 18 Si 0.99 39.57 29.56 68.60 2.03 41.60 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 22 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 23 C -0.10 -4.86 8.61 22.13 0.19 -4.67 16 24 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.35 4.46 8.82 -89.70 -0.79 3.66 16 28 H 0.02 0.61 7.96 -2.39 -0.02 0.60 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.44 7.75 -2.38 -0.02 1.42 16 31 H 0.07 1.10 7.67 -2.38 -0.02 1.09 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 10.00 8.37 -92.71 -0.78 9.22 16 34 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.12 6.52 6.13 -2.91 -0.02 6.51 16 36 H 0.28 13.76 8.30 -92.71 -0.77 13.00 16 37 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.11 5.18 6.22 -2.91 -0.02 5.17 16 Total: -1.00 -67.86 317.44 1.37 -66.50 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.49 Total: 32.15 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 4.59 Total: -33.07 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -4.72 Total: -82.20 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -67.86 1.37 -66.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092133516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.830 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds