Wall clock time and date at job start Mon Mar 30 2020 04:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.54245 * 2 1 4 4 C 1.53089 * 109.51013 * 239.88355 * 2 1 3 5 5 O 1.43022 * 109.26200 * 183.22212 * 4 2 1 6 6 C 1.43013 * 113.73998 * 58.66756 * 5 4 2 7 7 C 1.53104 * 109.25970 * 301.33638 * 6 5 4 8 8 N 1.47012 * 109.25801 * 56.84348 * 7 6 5 9 9 C 1.39851 * 111.00000 * 177.60973 * 8 7 6 10 10 C 1.39599 * 119.84227 * 236.02950 * 9 8 7 11 11 C 1.38059 * 120.55193 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.22058 * 359.77927 * 11 10 9 13 13 N 1.38866 * 120.16467 * 180.23765 * 12 11 10 14 14 C 1.41561 * 119.67193 * 0.47266 * 12 11 10 15 15 C 1.41020 * 120.26704 * 179.78940 * 14 12 11 16 16 H 1.08001 * 120.00085 * 25.30268 * 15 14 12 17 17 C 1.39891 * 120.00098 * 205.30393 * 15 14 12 18 18 N 1.30899 * 119.99889 * 15.35214 * 17 15 14 19 19 Si 1.86794 * 120.00223 * 195.34373 * 17 15 14 20 20 H 1.48507 * 109.46894 * 60.00590 * 19 17 15 21 21 H 1.48502 * 109.47401 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47341 * 300.00351 * 19 17 15 23 23 C 1.38009 * 119.84046 * 56.04615 * 9 8 7 24 24 H 1.08992 * 109.47177 * 299.89905 * 1 2 3 25 25 H 1.09003 * 109.46643 * 59.89987 * 1 2 3 26 26 H 1.09003 * 109.46869 * 179.89231 * 1 2 3 27 27 H 1.08997 * 109.51354 * 63.28406 * 4 2 1 28 28 H 1.09008 * 109.54273 * 303.17484 * 4 2 1 29 29 H 1.08996 * 109.50783 * 181.40434 * 6 5 4 30 30 H 1.08998 * 109.54276 * 61.28714 * 6 5 4 31 31 H 1.09003 * 109.50108 * 296.91667 * 7 6 5 32 32 H 1.08998 * 109.54412 * 176.80761 * 7 6 5 33 33 H 1.08009 * 119.72102 * 0.02562 * 10 9 8 34 34 H 1.08002 * 119.88557 * 180.02562 * 11 10 9 35 35 H 0.96994 * 119.99809 * 174.98848 * 13 12 11 36 36 H 0.97003 * 119.99795 * 354.97993 * 13 12 11 37 37 H 0.96999 * 120.00028 * 184.97072 * 18 17 15 38 38 H 1.07999 * 120.11569 * 359.96462 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2482 5 8 3.4695 -0.7869 -1.2054 6 6 3.9819 -1.4579 -0.0510 7 6 3.4902 -0.7413 1.2094 8 7 2.0208 -0.6950 1.1989 9 6 1.5300 -0.0944 2.3626 10 6 0.6215 -0.7821 3.1692 11 6 0.1272 -0.2030 4.3208 12 6 0.5333 1.0707 4.6917 13 7 0.0391 1.6502 5.8529 14 6 1.4500 1.7787 3.8779 15 6 1.8678 3.0759 4.2407 16 1 1.8442 3.3809 5.2764 17 6 2.3127 3.9676 3.2589 18 7 2.0671 3.7264 1.9960 19 14 3.2571 5.5025 3.7501 20 1 4.4968 5.1122 4.4685 21 1 3.6123 6.2759 2.5331 22 1 2.4126 6.3400 4.6391 23 6 1.9458 1.1754 2.7079 24 1 -0.3633 0.5122 0.8908 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 -1.0277 -0.0019 27 1 1.7275 -0.1798 -2.1389 28 1 1.6332 -1.7345 -1.2765 29 1 5.0715 -1.4442 -0.0758 30 1 3.6308 -2.4898 -0.0433 31 1 3.8861 0.2741 1.2286 32 1 3.8311 -1.2816 2.0925 33 1 0.3027 -1.7756 2.8899 34 1 -0.5749 -0.7449 4.9371 35 1 0.3786 2.5093 6.1486 36 1 -0.6457 1.1958 6.3683 37 1 2.4367 4.3051 1.3109 38 1 2.6490 1.7043 2.0817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127229423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:57 Heat of formation + Delta-G solvation = -17.145674 kcal Electronic energy + Delta-G solvation = -20488.406847 eV Core-core repulsion = 17523.301294 eV Total energy + Delta-G solvation = -2965.105553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56959 -37.66958 -35.44527 -33.57799 -32.49282 -31.80019 -29.50415 -28.21518 -26.44077 -25.44765 -24.48367 -22.19609 -21.40739 -20.33080 -18.95347 -17.28868 -16.08127 -15.85885 -15.67326 -15.54862 -14.81639 -14.71692 -14.34341 -14.07545 -13.75200 -12.83310 -12.68822 -12.44305 -12.04225 -11.72155 -11.62098 -11.50198 -11.42508 -11.17760 -11.09076 -10.85166 -10.61056 -10.47535 -10.33183 -9.83208 -9.68695 -9.18131 -9.11797 -9.00090 -7.62792 -7.38002 -6.69960 -6.22834 -4.15242 2.83163 3.05268 3.09349 3.10872 3.24021 3.98716 4.18453 4.54295 4.67262 5.22241 5.31131 5.46466 5.50039 5.63108 5.68829 5.76540 5.86736 5.99752 6.08862 6.20265 6.26471 6.39615 6.40719 6.57560 6.69174 6.84733 7.01807 7.14285 7.18119 7.33148 7.44443 7.62711 7.70636 7.72121 7.91223 8.22887 8.34374 8.62504 8.78521 8.84464 9.07659 9.15823 10.30689 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.008037 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.946622 B = 3483.067106 C = 4449.293174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.070 3.930 5 O -0.391 6.391 6 C 0.066 3.934 7 C 0.024 3.976 8 N -0.487 5.487 9 C 0.047 3.953 10 C -0.156 4.156 11 C -0.184 4.184 12 C 0.122 3.878 13 N -0.885 5.885 14 C 0.066 3.934 15 C -0.465 4.465 16 H 0.069 0.931 17 C 0.077 3.923 18 N -0.805 5.805 19 Si 0.900 3.100 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.391 0.609 36 H 0.377 0.623 37 H 0.277 0.723 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -5.373 -2.396 5.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 H 0.077 0.923 4 C -0.007 4.007 5 O -0.309 6.309 6 C -0.011 4.011 7 C -0.104 4.104 8 N -0.210 5.210 9 C -0.048 4.048 10 C -0.177 4.177 11 C -0.208 4.208 12 C 0.021 3.979 13 N -0.426 5.426 14 C 0.061 3.939 15 C -0.496 4.496 16 H 0.087 0.913 17 C -0.139 4.139 18 N -0.432 5.432 19 Si 0.725 3.275 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.180 4.180 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.219 0.781 36 H 0.202 0.798 37 H 0.087 0.913 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.158 -5.659 -2.880 6.352 hybrid contribution 0.399 1.693 0.776 1.905 sum 0.557 -3.966 -2.104 4.524 Atomic orbital electron populations 1.21648 0.93883 1.01510 1.02136 1.22249 0.96330 0.97009 0.90069 0.92307 1.22740 0.80594 0.99838 0.97527 1.87917 1.21081 1.78689 1.43246 1.22659 0.98282 0.95392 0.84811 1.22726 0.89085 1.00369 0.98216 1.59911 1.06970 1.52866 1.01212 1.18210 1.01013 0.93336 0.92196 1.19928 1.02652 0.98924 0.96198 1.19918 1.06016 0.94987 0.99856 1.18052 0.96880 0.93076 0.89936 1.41939 1.47548 1.25512 1.27571 1.17092 0.91884 0.92828 0.92107 1.19072 1.39874 0.96554 0.94146 0.91289 1.25693 0.94527 0.99052 0.94596 1.69812 1.34997 1.37655 1.00713 0.86505 0.80731 0.81441 0.78790 1.19200 1.20529 1.19315 1.21427 1.02849 0.93440 1.00281 0.91109 0.93136 0.92770 0.89212 0.92916 0.89165 0.92854 0.93618 0.90182 0.88994 0.89284 0.78084 0.79757 0.91251 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.01 37.16 0.33 -2.05 16 2 C 0.05 0.96 2.40 -67.60 -0.16 0.80 16 3 H 0.06 1.30 7.62 -51.93 -0.40 0.90 16 4 C 0.07 1.12 6.29 37.20 0.23 1.36 16 5 O -0.39 -6.72 10.83 -35.23 -0.38 -7.10 16 6 C 0.07 1.01 7.01 37.21 0.26 1.27 16 7 C 0.02 0.44 5.31 -3.71 -0.02 0.42 16 8 N -0.49 -9.71 4.52 -163.28 -0.74 -10.45 16 9 C 0.05 1.05 3.29 -83.78 -0.28 0.78 16 10 C -0.16 -3.44 9.78 -39.14 -0.38 -3.82 16 11 C -0.18 -4.02 9.87 -39.46 -0.39 -4.41 16 12 C 0.12 2.84 6.79 -83.23 -0.56 2.28 16 13 N -0.88 -17.31 8.97 32.75 0.29 -17.02 16 14 C 0.07 1.71 5.58 -106.66 -0.60 1.11 16 15 C -0.47 -11.99 8.54 -37.91 -0.32 -12.31 16 16 H 0.07 1.69 6.61 -52.49 -0.35 1.34 16 17 C 0.08 1.92 5.18 -17.33 -0.09 1.83 16 18 N -0.80 -20.84 10.88 55.55 0.60 -20.24 16 19 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C -0.16 -3.97 7.26 -38.75 -0.28 -4.25 16 24 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.94 7.00 -51.93 -0.36 0.57 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.39 7.52 7.03 -40.82 -0.29 7.24 16 36 H 0.38 6.18 8.84 -40.82 -0.36 5.82 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.12 3.21 5.07 -52.49 -0.27 2.95 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -27.64 303.03 -8.27 -35.91 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -5.33 Total: 17.43 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.26 Total: -16.99 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.16 Total: -47.70 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.38 Total: -7.10 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.64 -8.27 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127229423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.764 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds