Wall clock time and date at job start Mon Mar 30 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.54245 * 2 1 4 4 C 1.53089 * 109.51013 * 239.88355 * 2 1 3 5 5 O 1.43022 * 109.26200 * 183.22212 * 4 2 1 6 6 C 1.43013 * 113.73998 * 58.66756 * 5 4 2 7 7 C 1.53104 * 109.25970 * 301.33638 * 6 5 4 8 8 N 1.47012 * 109.25801 * 56.84348 * 7 6 5 9 9 C 1.39851 * 111.00000 * 177.60973 * 8 7 6 10 10 C 1.39599 * 119.84227 * 236.02950 * 9 8 7 11 11 C 1.38059 * 120.55193 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.22058 * 359.77927 * 11 10 9 13 13 N 1.38866 * 120.16467 * 180.23765 * 12 11 10 14 14 C 1.41561 * 119.67193 * 0.47266 * 12 11 10 15 15 C 1.41020 * 120.26704 * 179.78940 * 14 12 11 16 16 H 1.08001 * 120.00085 * 25.30268 * 15 14 12 17 17 C 1.39891 * 120.00098 * 205.30393 * 15 14 12 18 18 N 1.30899 * 119.99889 * 15.35214 * 17 15 14 19 19 Si 1.86794 * 120.00223 * 195.34373 * 17 15 14 20 20 H 1.48507 * 109.46894 * 60.00590 * 19 17 15 21 21 H 1.48502 * 109.47401 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47341 * 300.00351 * 19 17 15 23 23 C 1.38009 * 119.84046 * 56.04615 * 9 8 7 24 24 H 1.08992 * 109.47177 * 299.89905 * 1 2 3 25 25 H 1.09003 * 109.46643 * 59.89987 * 1 2 3 26 26 H 1.09003 * 109.46869 * 179.89231 * 1 2 3 27 27 H 1.08997 * 109.51354 * 63.28406 * 4 2 1 28 28 H 1.09008 * 109.54273 * 303.17484 * 4 2 1 29 29 H 1.08996 * 109.50783 * 181.40434 * 6 5 4 30 30 H 1.08998 * 109.54276 * 61.28714 * 6 5 4 31 31 H 1.09003 * 109.50108 * 296.91667 * 7 6 5 32 32 H 1.08998 * 109.54412 * 176.80761 * 7 6 5 33 33 H 1.08009 * 119.72102 * 0.02562 * 10 9 8 34 34 H 1.08002 * 119.88557 * 180.02562 * 11 10 9 35 35 H 0.96994 * 119.99809 * 174.98848 * 13 12 11 36 36 H 0.97003 * 119.99795 * 354.97993 * 13 12 11 37 37 H 0.96999 * 120.00028 * 184.97072 * 18 17 15 38 38 H 1.07999 * 120.11569 * 359.96462 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2482 5 8 3.4695 -0.7869 -1.2054 6 6 3.9819 -1.4579 -0.0510 7 6 3.4902 -0.7413 1.2094 8 7 2.0208 -0.6950 1.1989 9 6 1.5300 -0.0944 2.3626 10 6 0.6215 -0.7821 3.1692 11 6 0.1272 -0.2030 4.3208 12 6 0.5333 1.0707 4.6917 13 7 0.0391 1.6502 5.8529 14 6 1.4500 1.7787 3.8779 15 6 1.8678 3.0759 4.2407 16 1 1.8442 3.3809 5.2764 17 6 2.3127 3.9676 3.2589 18 7 2.0671 3.7264 1.9960 19 14 3.2571 5.5025 3.7501 20 1 4.4968 5.1122 4.4685 21 1 3.6123 6.2759 2.5331 22 1 2.4126 6.3400 4.6391 23 6 1.9458 1.1754 2.7079 24 1 -0.3633 0.5122 0.8908 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 -1.0277 -0.0019 27 1 1.7275 -0.1798 -2.1389 28 1 1.6332 -1.7345 -1.2765 29 1 5.0715 -1.4442 -0.0758 30 1 3.6308 -2.4898 -0.0433 31 1 3.8861 0.2741 1.2286 32 1 3.8311 -1.2816 2.0925 33 1 0.3027 -1.7756 2.8899 34 1 -0.5749 -0.7449 4.9371 35 1 0.3786 2.5093 6.1486 36 1 -0.6457 1.1958 6.3683 37 1 2.4367 4.3051 1.3109 38 1 2.6490 1.7043 2.0817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127229423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:56 Heat of formation + Delta-G solvation = -35.572167 kcal Electronic energy + Delta-G solvation = -20489.205880 eV Core-core repulsion = 17523.301294 eV Total energy + Delta-G solvation = -2965.904585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09192 -39.31980 -36.98430 -35.43239 -34.08019 -33.29255 -31.36779 -29.74898 -27.93107 -27.23599 -26.07833 -23.62225 -23.19274 -21.99457 -20.54796 -19.08962 -17.79490 -17.29326 -17.22207 -17.20071 -16.46323 -16.29829 -15.66999 -15.62906 -15.29190 -14.60252 -14.43005 -14.05758 -13.72408 -13.39108 -13.22984 -13.00859 -12.93888 -12.82399 -12.74493 -12.29627 -12.23801 -12.06461 -11.93742 -11.48794 -11.32738 -10.98786 -10.71246 -10.55562 -9.30012 -9.24794 -8.55871 -7.98368 -6.07193 1.05333 1.23393 1.35684 1.44878 1.51868 2.22131 2.80754 2.89473 3.06852 3.61780 3.77555 3.91609 4.11167 4.23250 4.29287 4.33518 4.49486 4.59663 4.69094 4.72022 4.82842 4.85186 4.93892 4.97172 5.11891 5.20778 5.28624 5.34836 5.42464 5.50166 5.85301 5.96284 6.05233 6.10143 6.22300 6.38385 6.50739 6.87701 6.93068 7.01143 7.30992 7.53011 8.44924 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.008037 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.946622 B = 3483.067106 C = 4449.293174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.050 3.950 3 H 0.014 0.986 4 C 0.076 3.924 5 O -0.404 6.404 6 C 0.072 3.928 7 C 0.023 3.977 8 N -0.481 5.481 9 C 0.043 3.957 10 C -0.152 4.152 11 C -0.188 4.188 12 C 0.115 3.885 13 N -0.873 5.873 14 C 0.028 3.972 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.838 5.838 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.259 1.259 23 C -0.172 4.172 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.012 0.988 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.392 0.608 36 H 0.395 0.605 37 H 0.277 0.723 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -6.759 -2.528 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 H 0.033 0.967 4 C -0.001 4.001 5 O -0.323 6.323 6 C -0.005 4.005 7 C -0.105 4.105 8 N -0.203 5.203 9 C -0.052 4.052 10 C -0.172 4.172 11 C -0.212 4.212 12 C 0.012 3.988 13 N -0.415 5.415 14 C 0.023 3.977 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.466 5.466 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.195 4.195 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.221 0.779 36 H 0.223 0.777 37 H 0.087 0.913 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.218 -7.056 -2.984 7.665 hybrid contribution 0.453 2.025 0.842 2.239 sum 0.235 -5.032 -2.142 5.474 Atomic orbital electron populations 1.21564 0.92967 1.02394 1.01346 1.22297 0.97105 0.95107 0.91220 0.96738 1.22800 0.80133 1.00768 0.96405 1.87908 1.21682 1.79090 1.43642 1.22764 0.99712 0.95522 0.82508 1.22797 0.88244 0.99034 1.00440 1.60072 1.07739 1.51859 1.00646 1.18361 1.00938 0.92599 0.93254 1.20232 1.01611 0.99545 0.95859 1.20259 1.06176 0.94609 1.00120 1.18218 0.96423 0.93590 0.90555 1.41836 1.47597 1.25530 1.26570 1.17462 0.93390 0.93628 0.93246 1.19343 1.41338 0.97183 0.94579 0.90828 1.26492 0.95113 1.01900 0.94399 1.69921 1.36138 1.38916 1.01638 0.85458 0.79269 0.77758 0.78438 1.19045 1.20254 1.18328 1.21318 1.03250 0.94572 1.00355 0.94870 0.90970 0.90849 0.87192 0.90780 0.86703 0.90791 0.96972 0.89797 0.86950 0.86252 0.77934 0.77712 0.91290 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.01 71.98 0.65 -3.71 16 2 C 0.05 1.91 2.40 44.92 0.11 2.02 16 3 H 0.01 0.68 7.62 -2.39 -0.02 0.66 16 4 C 0.08 2.27 6.29 72.01 0.45 2.73 16 5 O -0.40 -13.21 10.83 -148.98 -1.61 -14.82 16 6 C 0.07 2.08 7.01 72.02 0.50 2.58 16 7 C 0.02 0.84 5.31 86.32 0.46 1.29 16 8 N -0.48 -19.10 4.52 -670.50 -3.03 -22.13 16 9 C 0.04 1.98 3.29 38.14 0.13 2.11 16 10 C -0.15 -6.53 9.78 22.56 0.22 -6.30 16 11 C -0.19 -7.95 9.87 22.35 0.22 -7.73 16 12 C 0.12 5.34 6.79 38.97 0.26 5.61 16 13 N -0.87 -33.41 8.97 -50.31 -0.45 -33.86 16 14 C 0.03 1.49 5.58 -21.18 -0.12 1.37 16 15 C -0.49 -26.21 8.54 23.35 0.20 -26.01 16 16 H 0.07 3.68 6.61 -2.91 -0.02 3.66 16 17 C 0.03 1.69 5.18 85.23 0.44 2.14 16 18 N -0.84 -45.63 10.88 21.82 0.24 -45.39 16 19 Si 0.97 39.81 29.59 68.60 2.03 41.84 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.17 -9.07 7.26 22.81 0.17 -8.91 16 24 H 0.03 1.39 7.05 -2.39 -0.02 1.37 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.01 0.52 7.00 -2.39 -0.02 0.50 16 32 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 34 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.39 14.94 7.03 -92.71 -0.65 14.29 16 36 H 0.39 12.20 8.84 -92.71 -0.82 11.38 16 37 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 38 H 0.09 5.31 5.07 -2.91 -0.01 5.30 16 Total: -1.00 -61.86 303.03 0.47 -61.38 By element: Atomic # 1 Polarization: 46.21 SS G_CDS: -0.39 Total: 45.82 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.69 Total: -32.83 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.25 Total: -101.39 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.61 Total: -14.82 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.86 0.47 -61.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127229423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.810 kcal (2) G-P(sol) polarization free energy of solvation -61.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds