Wall clock time and date at job start Mon Mar 30 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.42133 * 2 1 4 4 O 1.44648 * 110.50650 * 122.36356 * 2 1 3 5 5 C 1.44424 * 105.36854 * 159.18003 * 4 2 1 6 6 C 1.54483 * 104.80630 * 319.56829 * 5 4 2 7 7 C 1.54478 * 110.36893 * 237.68970 * 2 1 3 8 8 H 1.09000 * 110.51781 * 335.97664 * 7 2 1 9 9 N 1.46498 * 110.51075 * 98.54879 * 7 2 1 10 10 C 1.39853 * 120.00319 * 203.09326 * 9 7 2 11 11 C 1.39609 * 119.83813 * 0.02562 * 10 9 7 12 12 C 1.38057 * 120.54975 * 179.97438 * 11 10 9 13 13 C 1.38732 * 120.22241 * 359.95465 * 12 11 10 14 14 N 1.38867 * 120.16327 * 180.02562 * 13 12 11 15 15 C 1.41562 * 119.67075 * 0.02562 * 13 12 11 16 16 C 1.41033 * 120.26680 * 179.97438 * 15 13 12 17 17 H 1.08008 * 119.99868 * 25.47482 * 16 15 13 18 18 C 1.39881 * 120.00356 * 205.47968 * 16 15 13 19 19 N 1.30909 * 119.99632 * 15.21082 * 18 16 15 20 20 Si 1.86790 * 120.00264 * 195.21009 * 18 16 15 21 21 H 1.48500 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47358 * 120.00120 * 20 18 16 23 23 H 1.48500 * 109.47287 * 240.00006 * 20 18 16 24 24 C 1.38003 * 119.84504 * 179.72261 * 10 9 7 25 25 H 1.09000 * 109.47424 * 182.30674 * 1 2 3 26 26 H 1.08997 * 109.47018 * 302.31066 * 1 2 3 27 27 H 1.09005 * 109.47204 * 62.30517 * 1 2 3 28 28 H 1.08996 * 110.37434 * 200.72949 * 5 4 2 29 29 H 1.09003 * 110.36787 * 78.39828 * 5 4 2 30 30 H 1.09001 * 110.50418 * 265.33280 * 6 5 4 31 31 H 1.08994 * 110.62894 * 142.67738 * 6 5 4 32 32 H 0.97003 * 120.00116 * 23.09701 * 9 7 2 33 33 H 1.08000 * 119.72065 * 359.97406 * 11 10 9 34 34 H 1.08001 * 119.88261 * 179.97438 * 12 11 10 35 35 H 0.96994 * 119.99728 * 0.02562 * 14 13 12 36 36 H 0.97005 * 119.99470 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99702 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.11172 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0367 -0.7252 1.1444 5 6 3.3900 -1.0911 0.7971 6 6 3.3172 -1.5085 -0.6885 7 6 2.0677 -0.7741 -1.2240 8 1 1.3265 -1.4902 -1.5788 9 7 2.4375 0.1535 -2.2959 10 6 2.4825 -0.2914 -3.6210 11 6 2.1737 -1.6200 -3.9186 12 6 2.2129 -2.0746 -5.2216 13 6 2.5598 -1.2127 -6.2518 14 7 2.5983 -1.6712 -7.5621 15 6 2.8743 0.1365 -5.9608 16 6 3.2290 1.0235 -6.9983 17 1 2.8848 0.8414 -8.0057 18 6 4.0268 2.1390 -6.7227 19 7 4.6866 2.2090 -5.5942 20 14 4.1506 3.5285 -7.9648 21 1 3.3155 3.2087 -9.1504 22 1 3.6700 4.7900 -7.3460 23 1 5.5653 3.6915 -8.3860 24 6 2.8258 0.5866 -4.6289 25 1 -0.3634 -1.0268 0.0414 26 1 -0.3633 0.5493 0.8685 27 1 -0.3634 0.4776 -0.9100 28 1 3.7262 -1.9273 1.4101 29 1 4.0570 -0.2377 0.9192 30 1 3.1927 -2.5878 -0.7762 31 1 4.2097 -1.1832 -1.2229 32 1 2.6513 1.0762 -2.0866 33 1 1.9020 -2.2977 -3.1228 34 1 1.9724 -3.1047 -5.4395 35 1 2.3820 -2.5960 -7.7587 36 1 2.8408 -1.0663 -8.2806 37 1 5.2395 2.9827 -5.4030 38 1 3.0589 1.6150 -4.3956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127497579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:36 Heat of formation + Delta-G solvation = -24.334080 kcal Electronic energy + Delta-G solvation = -19696.089987 eV Core-core repulsion = 16730.672721 eV Total energy + Delta-G solvation = -2965.417265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54570 -37.76357 -35.10826 -33.47741 -32.27526 -31.34177 -29.94245 -29.38628 -26.56707 -24.92961 -24.57174 -21.99444 -21.40244 -20.38156 -19.57833 -17.19160 -16.44382 -15.97647 -15.52782 -15.47755 -15.29354 -14.83147 -14.57416 -13.74717 -13.35314 -12.87410 -12.56690 -12.41642 -12.28619 -12.04159 -11.90351 -11.67231 -11.43401 -11.19357 -11.13924 -11.00157 -10.96255 -10.49728 -10.32525 -9.89959 -9.77968 -9.64564 -9.33701 -9.08626 -7.80574 -7.24899 -6.63047 -5.58087 -4.08762 2.87865 3.12538 3.16695 3.28509 3.44278 3.90382 4.01756 4.42019 4.77062 4.85458 4.96942 5.17639 5.21907 5.38669 5.41605 5.51384 5.67165 5.82300 5.86723 5.94025 6.05794 6.19173 6.22733 6.34966 6.36716 6.62221 6.86924 7.10104 7.13583 7.30527 7.45117 7.67744 7.85748 7.97125 8.09727 8.43534 8.71238 8.85689 8.91250 8.97618 9.23819 9.31733 10.35361 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.005422 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.325343 B = 5163.066554 C = 5853.809898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.069 0.931 4 O -0.377 6.377 5 C 0.046 3.954 6 C -0.174 4.174 7 C 0.139 3.861 8 H 0.087 0.913 9 N -0.752 5.752 10 C 0.176 3.824 11 C -0.253 4.253 12 C -0.153 4.153 13 C 0.086 3.914 14 N -0.889 5.889 15 C 0.094 3.906 16 C -0.462 4.462 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.801 5.801 20 Si 0.902 3.098 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.278 1.278 24 C -0.199 4.199 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.388 0.612 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.374 0.626 36 H 0.389 0.611 37 H 0.274 0.726 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -2.791 7.169 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.087 0.913 4 O -0.296 6.296 5 C -0.031 4.031 6 C -0.214 4.214 7 C 0.031 3.969 8 H 0.105 0.895 9 N -0.387 5.387 10 C 0.078 3.922 11 C -0.277 4.277 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.431 5.431 15 C 0.089 3.911 16 C -0.493 4.493 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.727 3.273 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.203 1.203 24 C -0.223 4.223 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.221 0.779 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.199 0.801 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.067 -2.802 7.634 8.691 hybrid contribution 0.548 0.848 -0.939 1.378 sum -2.519 -1.954 6.695 7.416 Atomic orbital electron populations 1.21757 0.92897 1.02836 1.02443 1.23247 0.95491 0.95551 0.85124 0.91294 1.89128 1.27514 1.74707 1.38226 1.23367 0.84422 0.99545 0.95720 1.23518 1.00942 1.01342 0.95568 1.21945 0.95144 0.92203 0.87613 0.89495 1.44331 1.79947 1.11144 1.03237 1.17487 0.98729 0.93130 0.82861 1.19629 1.18584 0.94360 0.95141 1.19705 1.08943 0.96769 0.92330 1.17871 1.06130 0.93126 0.84366 1.41817 1.82964 1.12428 1.05933 1.16982 0.92320 0.88957 0.92883 1.19171 1.28031 1.06563 0.95570 0.91080 1.25750 0.93747 0.98693 0.95825 1.69886 1.21378 1.28122 1.23386 0.86371 0.78442 0.81099 0.81343 1.18734 1.20035 1.20344 1.20520 1.11685 0.98841 0.91300 0.91839 0.92210 0.90683 0.89513 0.92547 0.90928 0.89592 0.77864 0.89711 0.89798 0.80097 0.78333 0.91536 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.52 37.16 0.35 -1.41 16 2 C 0.06 0.90 3.65 -25.96 -0.09 0.80 16 3 H 0.07 0.95 7.75 -51.93 -0.40 0.54 16 4 O -0.38 -5.49 11.35 -35.23 -0.40 -5.89 16 5 C 0.05 0.60 7.64 37.94 0.29 0.89 16 6 C -0.17 -2.56 6.88 -25.16 -0.17 -2.73 16 7 C 0.14 2.20 2.66 -66.36 -0.18 2.02 16 8 H 0.09 1.45 6.22 -51.93 -0.32 1.12 16 9 N -0.75 -13.98 5.24 -50.66 -0.27 -14.25 16 10 C 0.18 3.99 6.64 -83.77 -0.56 3.43 16 11 C -0.25 -5.65 9.21 -39.14 -0.36 -6.01 16 12 C -0.15 -3.47 9.86 -39.47 -0.39 -3.86 16 13 C 0.09 2.06 6.79 -83.23 -0.56 1.50 16 14 N -0.89 -18.05 8.98 32.75 0.29 -17.76 16 15 C 0.09 2.46 5.58 -106.66 -0.60 1.86 16 16 C -0.46 -12.01 8.50 -37.91 -0.32 -12.33 16 17 H 0.07 1.77 6.67 -52.48 -0.35 1.42 16 18 C 0.08 1.89 5.18 -17.33 -0.09 1.80 16 19 N -0.80 -20.68 10.88 55.54 0.60 -20.08 16 20 Si 0.90 18.79 29.59 -169.99 -5.03 13.76 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.20 -5.07 8.50 -38.75 -0.33 -5.40 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.40 7.96 -51.93 -0.41 0.99 16 32 H 0.39 6.93 8.37 -40.82 -0.34 6.59 16 33 H 0.08 1.73 6.21 -52.49 -0.33 1.40 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.37 6.43 8.83 -40.82 -0.36 6.07 16 36 H 0.39 7.75 7.04 -40.82 -0.29 7.46 16 37 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.12 3.15 6.15 -52.48 -0.32 2.83 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -27.91 308.39 -8.38 -36.29 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -5.22 Total: 22.72 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.01 Total: -19.44 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.63 Total: -52.08 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.40 Total: -5.89 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.91 -8.38 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127497579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.954 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds