Wall clock time and date at job start Mon Mar 30 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.42133 * 2 1 4 4 O 1.44648 * 110.50650 * 122.36356 * 2 1 3 5 5 C 1.44424 * 105.36854 * 159.18003 * 4 2 1 6 6 C 1.54483 * 104.80630 * 319.56829 * 5 4 2 7 7 C 1.54478 * 110.36893 * 237.68970 * 2 1 3 8 8 H 1.09000 * 110.51781 * 335.97664 * 7 2 1 9 9 N 1.46498 * 110.51075 * 98.54879 * 7 2 1 10 10 C 1.39853 * 120.00319 * 203.09326 * 9 7 2 11 11 C 1.39609 * 119.83813 * 0.02562 * 10 9 7 12 12 C 1.38057 * 120.54975 * 179.97438 * 11 10 9 13 13 C 1.38732 * 120.22241 * 359.95465 * 12 11 10 14 14 N 1.38867 * 120.16327 * 180.02562 * 13 12 11 15 15 C 1.41562 * 119.67075 * 0.02562 * 13 12 11 16 16 C 1.41033 * 120.26680 * 179.97438 * 15 13 12 17 17 H 1.08008 * 119.99868 * 25.47482 * 16 15 13 18 18 C 1.39881 * 120.00356 * 205.47968 * 16 15 13 19 19 N 1.30909 * 119.99632 * 15.21082 * 18 16 15 20 20 Si 1.86790 * 120.00264 * 195.21009 * 18 16 15 21 21 H 1.48500 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47358 * 120.00120 * 20 18 16 23 23 H 1.48500 * 109.47287 * 240.00006 * 20 18 16 24 24 C 1.38003 * 119.84504 * 179.72261 * 10 9 7 25 25 H 1.09000 * 109.47424 * 182.30674 * 1 2 3 26 26 H 1.08997 * 109.47018 * 302.31066 * 1 2 3 27 27 H 1.09005 * 109.47204 * 62.30517 * 1 2 3 28 28 H 1.08996 * 110.37434 * 200.72949 * 5 4 2 29 29 H 1.09003 * 110.36787 * 78.39828 * 5 4 2 30 30 H 1.09001 * 110.50418 * 265.33280 * 6 5 4 31 31 H 1.08994 * 110.62894 * 142.67738 * 6 5 4 32 32 H 0.97003 * 120.00116 * 23.09701 * 9 7 2 33 33 H 1.08000 * 119.72065 * 359.97406 * 11 10 9 34 34 H 1.08001 * 119.88261 * 179.97438 * 12 11 10 35 35 H 0.96994 * 119.99728 * 0.02562 * 14 13 12 36 36 H 0.97005 * 119.99470 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99702 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.11172 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0367 -0.7252 1.1444 5 6 3.3900 -1.0911 0.7971 6 6 3.3172 -1.5085 -0.6885 7 6 2.0677 -0.7741 -1.2240 8 1 1.3265 -1.4902 -1.5788 9 7 2.4375 0.1535 -2.2959 10 6 2.4825 -0.2914 -3.6210 11 6 2.1737 -1.6200 -3.9186 12 6 2.2129 -2.0746 -5.2216 13 6 2.5598 -1.2127 -6.2518 14 7 2.5983 -1.6712 -7.5621 15 6 2.8743 0.1365 -5.9608 16 6 3.2290 1.0235 -6.9983 17 1 2.8848 0.8414 -8.0057 18 6 4.0268 2.1390 -6.7227 19 7 4.6866 2.2090 -5.5942 20 14 4.1506 3.5285 -7.9648 21 1 3.3155 3.2087 -9.1504 22 1 3.6700 4.7900 -7.3460 23 1 5.5653 3.6915 -8.3860 24 6 2.8258 0.5866 -4.6289 25 1 -0.3634 -1.0268 0.0414 26 1 -0.3633 0.5493 0.8685 27 1 -0.3634 0.4776 -0.9100 28 1 3.7262 -1.9273 1.4101 29 1 4.0570 -0.2377 0.9192 30 1 3.1927 -2.5878 -0.7762 31 1 4.2097 -1.1832 -1.2229 32 1 2.6513 1.0762 -2.0866 33 1 1.9020 -2.2977 -3.1228 34 1 1.9724 -3.1047 -5.4395 35 1 2.3820 -2.5960 -7.7587 36 1 2.8408 -1.0663 -8.2806 37 1 5.2395 2.9827 -5.4030 38 1 3.0589 1.6150 -4.3956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127497579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:36 Heat of formation + Delta-G solvation = -42.240130 kcal Electronic energy + Delta-G solvation = -19696.866451 eV Core-core repulsion = 16730.672721 eV Total energy + Delta-G solvation = -2966.193730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77498 -39.47304 -36.65931 -35.32265 -33.78115 -32.43276 -31.42253 -31.18229 -28.15108 -26.69848 -25.90147 -23.35176 -22.89431 -21.85352 -21.21855 -18.95621 -17.98958 -17.44371 -17.09678 -16.81134 -16.63308 -16.39241 -16.13751 -15.11681 -14.73112 -14.29718 -14.19014 -14.00549 -13.78210 -13.40471 -13.30826 -13.13450 -13.01708 -12.74214 -12.70866 -12.49200 -12.15928 -12.04534 -11.74729 -11.58382 -11.33107 -11.14256 -10.93950 -10.77632 -9.41337 -9.13698 -8.48877 -7.31327 -5.99648 1.12135 1.42012 1.51104 1.55001 1.65156 2.27678 2.67506 2.93024 3.09763 3.71174 3.75089 3.79037 4.00584 4.01422 4.14687 4.28078 4.43730 4.59538 4.67292 4.71666 4.86254 4.90363 5.00741 5.02907 5.12345 5.24491 5.25010 5.35290 5.43866 5.65639 5.77619 5.91749 6.07837 6.17841 6.28536 6.57646 6.97587 7.06123 7.13058 7.23322 7.47551 7.67404 8.51485 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.005422 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.325343 B = 5163.066554 C = 5853.809898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.071 0.929 4 O -0.384 6.384 5 C 0.049 3.951 6 C -0.172 4.172 7 C 0.135 3.865 8 H 0.082 0.918 9 N -0.746 5.746 10 C 0.176 3.824 11 C -0.255 4.255 12 C -0.159 4.159 13 C 0.070 3.930 14 N -0.879 5.879 15 C 0.059 3.941 16 C -0.490 4.490 17 H 0.073 0.927 18 C 0.033 3.967 19 N -0.833 5.833 20 Si 0.974 3.026 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.273 1.273 24 C -0.223 4.223 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.389 0.611 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.390 0.610 36 H 0.390 0.610 37 H 0.278 0.722 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -3.308 7.773 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.089 0.911 4 O -0.303 6.303 5 C -0.027 4.027 6 C -0.211 4.211 7 C 0.028 3.972 8 H 0.100 0.900 9 N -0.380 5.380 10 C 0.077 3.923 11 C -0.278 4.278 12 C -0.183 4.183 13 C -0.032 4.032 14 N -0.423 5.423 15 C 0.054 3.946 16 C -0.521 4.521 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.461 5.461 20 Si 0.797 3.203 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.248 4.248 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.218 0.782 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.477 -3.349 8.256 9.564 hybrid contribution 0.655 0.915 -1.037 1.530 sum -2.822 -2.433 7.219 8.124 Atomic orbital electron populations 1.21747 0.91655 1.03297 1.02960 1.23227 0.96465 0.95266 0.84056 0.91073 1.89128 1.28250 1.74757 1.38198 1.23461 0.83928 1.00686 0.94649 1.23453 0.99358 1.01638 0.96686 1.22104 0.95678 0.91974 0.87444 0.90020 1.44342 1.79366 1.11748 1.02562 1.17539 0.97718 0.93076 0.83999 1.19919 1.17734 0.94401 0.95792 1.20048 1.08187 0.97857 0.92196 1.18047 1.06330 0.92775 0.86036 1.41696 1.82551 1.13335 1.04739 1.17372 0.93463 0.90345 0.93454 1.19414 1.29073 1.07857 0.95777 0.90884 1.26544 0.93045 1.00658 0.97706 1.69965 1.22039 1.28958 1.25111 0.85279 0.78473 0.77716 0.78874 1.18262 1.19693 1.19805 1.20484 1.13475 0.98554 0.92241 0.91504 0.90769 0.91020 0.87129 0.91955 0.90103 0.91452 0.77685 0.87631 0.87245 0.78219 0.78232 0.91129 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.52 71.98 0.69 -2.51 16 2 C 0.07 1.79 3.65 31.10 0.11 1.90 16 3 H 0.07 1.85 7.75 -2.39 -0.02 1.83 16 4 O -0.38 -10.30 11.35 -148.98 -1.69 -11.99 16 5 C 0.05 1.16 7.64 72.49 0.55 1.71 16 6 C -0.17 -4.79 6.88 31.61 0.22 -4.57 16 7 C 0.13 4.10 2.66 46.01 0.12 4.22 16 8 H 0.08 2.59 6.22 -2.39 -0.01 2.57 16 9 N -0.75 -27.65 5.24 -314.18 -1.65 -29.29 16 10 C 0.18 8.04 6.64 38.14 0.25 8.30 16 11 C -0.25 -11.11 9.21 22.56 0.21 -10.90 16 12 C -0.16 -7.01 9.86 22.34 0.22 -6.79 16 13 C 0.07 3.36 6.79 38.97 0.26 3.63 16 14 N -0.88 -35.17 8.98 -50.31 -0.45 -35.62 16 15 C 0.06 3.15 5.58 -21.18 -0.12 3.04 16 16 C -0.49 -26.02 8.50 23.35 0.20 -25.82 16 17 H 0.07 3.69 6.67 -2.91 -0.02 3.67 16 18 C 0.03 1.67 5.18 85.23 0.44 2.12 16 19 N -0.83 -44.15 10.88 21.82 0.24 -43.91 16 20 Si 0.97 38.97 29.59 68.60 2.03 41.00 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.22 -11.68 8.50 22.81 0.19 -11.49 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.15 7.96 -2.39 -0.02 2.13 16 32 H 0.39 14.07 8.37 -92.71 -0.78 13.30 16 33 H 0.11 4.10 6.21 -2.91 -0.02 4.08 16 34 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.39 12.85 8.83 -92.71 -0.82 12.03 16 36 H 0.39 15.46 7.04 -92.70 -0.65 14.81 16 37 H 0.28 13.53 8.30 -92.71 -0.77 12.76 16 38 H 0.10 5.50 6.15 -2.91 -0.02 5.49 16 Total: -1.00 -59.85 308.39 0.69 -59.16 By element: Atomic # 1 Polarization: 58.97 SS G_CDS: -1.14 Total: 57.82 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.35 Total: -37.17 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -1.86 Total: -108.83 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.69 Total: -11.99 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -59.85 0.69 -59.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127497579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.925 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds