Wall clock time and date at job start Mon Mar 30 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47496 * 2 1 4 4 C 1.50700 * 109.47123 * 120.00529 * 2 1 3 5 5 H 1.08001 * 120.00338 * 115.25436 * 4 2 1 6 6 C 1.37879 * 119.99483 * 295.25437 * 4 2 1 7 7 N 1.31510 * 120.00436 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47439 * 89.99937 * 8 6 4 10 10 H 1.48503 * 109.46957 * 209.99610 * 8 6 4 11 11 H 1.48500 * 109.47371 * 329.99703 * 8 6 4 12 12 N 1.46904 * 109.47161 * 240.00138 * 2 1 3 13 13 C 1.47900 * 111.00247 * 176.28369 * 12 2 1 14 14 C 1.53994 * 107.06086 * 214.15876 * 13 12 2 15 15 C 1.54592 * 105.13825 * 1.22242 * 14 13 12 16 16 H 1.08996 * 110.73060 * 263.42232 * 15 14 13 17 17 O 1.42907 * 110.72212 * 140.31631 * 15 14 13 18 18 C 1.35908 * 116.99808 * 88.15332 * 17 15 14 19 19 C 1.39138 * 120.47634 * 354.81003 * 18 17 15 20 20 C 1.38529 * 118.37663 * 180.02562 * 19 18 17 21 21 C 1.38252 * 119.22513 * 359.97438 * 20 19 18 22 22 N 1.31852 * 120.87952 * 0.02562 * 21 20 19 23 23 C 1.31843 * 121.78567 * 359.70503 * 22 21 20 24 24 C 1.48536 * 110.99704 * 58.88808 * 12 2 1 25 25 H 1.08995 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46921 * 59.99939 * 1 2 3 27 27 H 1.08997 * 109.46824 * 300.00041 * 1 2 3 28 28 H 0.96998 * 120.00090 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.91620 * 333.51460 * 13 12 2 30 30 H 1.09004 * 109.91458 * 94.60470 * 13 12 2 31 31 H 1.08998 * 110.30999 * 120.13941 * 14 13 12 32 32 H 1.09005 * 110.30564 * 242.30981 * 14 13 12 33 33 H 1.08002 * 120.80804 * 359.97438 * 19 18 17 34 34 H 1.08002 * 120.39204 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.56261 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.66154 * 180.29196 * 23 22 21 37 37 H 1.08997 * 110.66895 * 278.15307 * 24 12 2 38 38 H 1.08996 * 110.66638 * 41.28962 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5886 -1.6312 1.1331 6 6 1.7818 -0.1852 2.4803 7 7 1.1050 0.9361 2.5988 8 14 2.4051 -1.0655 4.0055 9 1 3.7638 -0.5700 4.3426 10 1 1.4856 -0.7998 5.1409 11 1 2.4614 -2.5265 3.7455 12 7 2.0197 -0.6925 -1.1995 13 6 3.4955 -0.6352 -1.2793 14 6 3.8641 -0.5455 -2.7718 15 6 2.5120 -0.5240 -3.5210 16 1 2.2466 -1.5229 -3.8668 17 8 2.5552 0.3933 -4.6159 18 6 2.9995 -0.0879 -5.8068 19 6 3.4901 -1.3862 -5.9044 20 6 3.9322 -1.8318 -7.1394 21 6 3.8716 -0.9792 -8.2259 22 7 3.4008 0.2459 -8.0993 23 6 2.9655 0.7066 -6.9432 24 6 1.5216 -0.0346 -2.4345 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.9284 1.3055 3.4781 29 1 3.8619 0.2460 -0.7527 30 1 3.9262 -1.5354 -0.8408 31 1 4.4208 0.3704 -2.9696 32 1 4.4481 -1.4162 -3.0702 33 1 3.5261 -2.0305 -5.0384 34 1 4.3189 -2.8339 -7.2522 35 1 4.2151 -1.3208 -9.1911 36 1 2.5825 1.7143 -6.8796 37 1 0.5074 -0.3624 -2.6628 38 1 1.5635 1.0501 -2.3363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127902251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:04 Heat of formation + Delta-G solvation = 6.709992 kcal Electronic energy + Delta-G solvation = -19459.683331 eV Core-core repulsion = 16495.612237 eV Total energy + Delta-G solvation = -2964.071093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74603 -38.97043 -37.19302 -33.63381 -32.33798 -31.26017 -30.38346 -28.27178 -27.61323 -25.11827 -23.94568 -23.25107 -21.62672 -20.50177 -19.60396 -18.30891 -16.93766 -16.75335 -16.19720 -15.85101 -15.10257 -14.70431 -14.40377 -14.11709 -13.55271 -13.43006 -13.20663 -13.11645 -12.82424 -12.42258 -12.04224 -11.72787 -11.34094 -11.13020 -10.98726 -10.71555 -10.62738 -10.48310 -10.29221 -10.03731 -9.93434 -9.89218 -9.71503 -8.99695 -8.49642 -8.48207 -7.44764 -6.07306 -4.11442 0.99547 1.13244 3.04407 3.27218 3.34251 3.38080 3.67021 4.35687 4.38427 4.53002 4.66908 4.74633 4.84567 4.97469 5.03535 5.13854 5.20145 5.26543 5.50802 5.56982 5.77056 5.90366 5.95253 5.98561 6.10514 6.20849 6.35220 6.49833 6.52350 6.73163 6.92551 6.96116 7.25173 7.35547 7.50101 7.77227 7.82448 7.99953 8.18129 8.44376 8.95370 9.53989 11.00923 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.049185 B = 0.003857 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.137713 B = 7257.378524 C = 7567.704851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.204 3.796 3 H 0.007 0.993 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.507 5.507 13 C 0.054 3.946 14 C -0.154 4.154 15 C 0.076 3.924 16 H 0.085 0.915 17 O -0.299 6.299 18 C 0.092 3.908 19 C -0.167 4.167 20 C -0.131 4.131 21 C 0.048 3.952 22 N -0.450 5.450 23 C 0.067 3.933 24 C 0.046 3.954 25 H 0.036 0.964 26 H 0.010 0.990 27 H 0.078 0.922 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -3.768 -16.043 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.098 3.902 3 H 0.024 0.976 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.234 5.234 13 C -0.075 4.075 14 C -0.192 4.192 15 C 0.020 3.980 16 H 0.103 0.897 17 O -0.210 6.210 18 C 0.043 3.957 19 C -0.194 4.194 20 C -0.150 4.150 21 C -0.109 4.109 22 N -0.159 5.159 23 C -0.092 4.092 24 C -0.083 4.083 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.102 0.898 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.260 -3.437 -16.496 17.380 hybrid contribution 0.711 -0.391 1.728 1.909 sum 4.971 -3.828 -14.767 16.045 Atomic orbital electron populations 1.21791 0.97656 0.99649 0.99791 1.19491 0.92446 0.92307 0.85914 0.97554 1.21052 1.34729 1.08782 0.89729 0.91960 1.24943 0.95218 0.94991 0.99065 1.69916 1.40017 1.19533 1.23725 0.86514 0.78530 0.80059 0.82417 1.20767 1.21236 1.19810 1.64969 1.05254 1.51362 1.01799 1.22552 0.90544 1.01931 0.92451 1.23026 0.96608 1.02314 0.97300 1.23616 0.97247 0.92505 0.84680 0.89703 1.86162 1.79439 1.39294 1.16139 1.20257 0.94587 0.93309 0.87522 1.21862 1.02010 0.95782 0.99712 1.22000 0.99077 1.01169 0.92802 1.22606 0.99516 0.89738 0.99065 1.67693 1.08314 1.15187 1.24704 1.22222 1.00738 1.00576 0.85663 1.23106 0.97405 0.98202 0.89538 0.94472 0.97121 0.90315 0.92894 0.93242 0.90646 0.90801 0.91258 0.83982 0.84646 0.82753 0.82049 0.89850 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.84 37.16 0.33 -2.77 16 2 C 0.20 5.03 1.67 -68.86 -0.11 4.92 16 3 H 0.01 0.19 7.98 -51.93 -0.41 -0.23 16 4 C -0.50 -13.52 8.04 -34.44 -0.28 -13.80 16 5 H 0.06 1.67 7.64 -52.49 -0.40 1.27 16 6 C 0.06 1.61 5.32 -17.82 -0.09 1.52 16 7 N -0.89 -25.17 11.68 55.43 0.65 -24.52 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.51 -10.49 5.10 -223.88 -1.14 -11.63 16 13 C 0.05 0.99 5.88 -2.75 -0.02 0.97 16 14 C -0.15 -2.26 6.37 -25.38 -0.16 -2.42 16 15 C 0.08 1.12 2.87 -24.87 -0.07 1.05 16 16 H 0.09 1.15 6.41 -51.93 -0.33 0.82 16 17 O -0.30 -4.36 9.89 -19.45 -0.19 -4.55 16 18 C 0.09 1.19 6.68 -39.07 -0.26 0.93 16 19 C -0.17 -1.89 8.95 -39.14 -0.35 -2.24 16 20 C -0.13 -1.25 10.11 -39.47 -0.40 -1.64 16 21 C 0.05 0.48 11.18 -17.54 -0.20 0.29 16 22 N -0.45 -5.59 10.36 -13.13 -0.14 -5.72 16 23 C 0.07 0.83 11.14 -17.37 -0.19 0.64 16 24 C 0.05 0.81 5.09 -1.89 -0.01 0.80 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.01 0.21 6.91 -51.93 -0.36 -0.15 16 27 H 0.08 2.05 6.46 -51.93 -0.34 1.71 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 30 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 31 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 33 H 0.14 1.48 5.71 -52.49 -0.30 1.18 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.08 1.42 7.66 -51.93 -0.40 1.03 16 38 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -28.98 309.01 -8.43 -37.40 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.42 Total: 0.14 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.82 Total: -11.75 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.63 Total: -41.87 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.98 -8.43 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127902251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.111 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds