Wall clock time and date at job start Mon Mar 30 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47496 * 2 1 4 4 C 1.50700 * 109.47123 * 120.00529 * 2 1 3 5 5 H 1.08001 * 120.00338 * 115.25436 * 4 2 1 6 6 C 1.37879 * 119.99483 * 295.25437 * 4 2 1 7 7 N 1.31510 * 120.00436 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47439 * 89.99937 * 8 6 4 10 10 H 1.48503 * 109.46957 * 209.99610 * 8 6 4 11 11 H 1.48500 * 109.47371 * 329.99703 * 8 6 4 12 12 N 1.46904 * 109.47161 * 240.00138 * 2 1 3 13 13 C 1.47900 * 111.00247 * 176.28369 * 12 2 1 14 14 C 1.53994 * 107.06086 * 214.15876 * 13 12 2 15 15 C 1.54592 * 105.13825 * 1.22242 * 14 13 12 16 16 H 1.08996 * 110.73060 * 263.42232 * 15 14 13 17 17 O 1.42907 * 110.72212 * 140.31631 * 15 14 13 18 18 C 1.35908 * 116.99808 * 88.15332 * 17 15 14 19 19 C 1.39138 * 120.47634 * 354.81003 * 18 17 15 20 20 C 1.38529 * 118.37663 * 180.02562 * 19 18 17 21 21 C 1.38252 * 119.22513 * 359.97438 * 20 19 18 22 22 N 1.31852 * 120.87952 * 0.02562 * 21 20 19 23 23 C 1.31843 * 121.78567 * 359.70503 * 22 21 20 24 24 C 1.48536 * 110.99704 * 58.88808 * 12 2 1 25 25 H 1.08995 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46921 * 59.99939 * 1 2 3 27 27 H 1.08997 * 109.46824 * 300.00041 * 1 2 3 28 28 H 0.96998 * 120.00090 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.91620 * 333.51460 * 13 12 2 30 30 H 1.09004 * 109.91458 * 94.60470 * 13 12 2 31 31 H 1.08998 * 110.30999 * 120.13941 * 14 13 12 32 32 H 1.09005 * 110.30564 * 242.30981 * 14 13 12 33 33 H 1.08002 * 120.80804 * 359.97438 * 19 18 17 34 34 H 1.08002 * 120.39204 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.56261 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.66154 * 180.29196 * 23 22 21 37 37 H 1.08997 * 110.66895 * 278.15307 * 24 12 2 38 38 H 1.08996 * 110.66638 * 41.28962 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5886 -1.6312 1.1331 6 6 1.7818 -0.1852 2.4803 7 7 1.1050 0.9361 2.5988 8 14 2.4051 -1.0655 4.0055 9 1 3.7638 -0.5700 4.3426 10 1 1.4856 -0.7998 5.1409 11 1 2.4614 -2.5265 3.7455 12 7 2.0197 -0.6925 -1.1995 13 6 3.4955 -0.6352 -1.2793 14 6 3.8641 -0.5455 -2.7718 15 6 2.5120 -0.5240 -3.5210 16 1 2.2466 -1.5229 -3.8668 17 8 2.5552 0.3933 -4.6159 18 6 2.9995 -0.0879 -5.8068 19 6 3.4901 -1.3862 -5.9044 20 6 3.9322 -1.8318 -7.1394 21 6 3.8716 -0.9792 -8.2259 22 7 3.4008 0.2459 -8.0993 23 6 2.9655 0.7066 -6.9432 24 6 1.5216 -0.0346 -2.4345 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.9284 1.3055 3.4781 29 1 3.8619 0.2460 -0.7527 30 1 3.9262 -1.5354 -0.8408 31 1 4.4208 0.3704 -2.9696 32 1 4.4481 -1.4162 -3.0702 33 1 3.5261 -2.0305 -5.0384 34 1 4.3189 -2.8339 -7.2522 35 1 4.2151 -1.3208 -9.1911 36 1 2.5825 1.7143 -6.8796 37 1 0.5074 -0.3624 -2.6628 38 1 1.5635 1.0501 -2.3363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127902251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:04 Heat of formation + Delta-G solvation = -12.093869 kcal Electronic energy + Delta-G solvation = -19460.498727 eV Core-core repulsion = 16495.612237 eV Total energy + Delta-G solvation = -2964.886490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70606 -40.17124 -38.51462 -35.47541 -33.18113 -32.97145 -31.40242 -29.68424 -29.21846 -27.08760 -24.95381 -24.16696 -23.16541 -21.73853 -21.31577 -19.35658 -18.38894 -17.81898 -17.61828 -17.15901 -16.61314 -15.90139 -15.77261 -15.15873 -14.87674 -14.85500 -14.61489 -14.37759 -14.11634 -13.82809 -13.42676 -13.08816 -12.85694 -12.80527 -12.65476 -12.58306 -12.17081 -12.09465 -11.82890 -11.75512 -11.57136 -10.97584 -10.72666 -10.56624 -10.54954 -9.41043 -9.17760 -8.14700 -6.25962 0.17820 0.27764 1.41832 1.42994 1.53646 1.96543 2.42104 2.83236 3.15794 3.32651 3.52504 3.60564 3.68501 3.75143 3.86008 4.00829 4.16758 4.22023 4.34497 4.51588 4.66261 4.73217 4.75566 4.80252 4.89177 4.93964 4.98979 5.03866 5.11276 5.14753 5.17569 5.39774 5.51825 5.65893 5.69279 6.13399 6.21835 6.31283 6.53200 6.87703 6.98949 7.43598 8.93051 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.049185 B = 0.003857 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.137713 B = 7257.378524 C = 7567.704851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.209 3.791 3 H -0.032 1.032 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.512 5.512 13 C 0.051 3.949 14 C -0.141 4.141 15 C 0.090 3.910 16 H 0.105 0.895 17 O -0.314 6.314 18 C 0.069 3.931 19 C -0.169 4.169 20 C -0.123 4.123 21 C 0.047 3.953 22 N -0.472 5.472 23 C 0.053 3.947 24 C 0.042 3.958 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.090 0.910 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -5.917 -17.542 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H -0.015 1.015 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.238 5.238 13 C -0.077 4.077 14 C -0.179 4.179 15 C 0.034 3.966 16 H 0.123 0.877 17 O -0.226 6.226 18 C 0.021 3.979 19 C -0.196 4.196 20 C -0.142 4.142 21 C -0.110 4.110 22 N -0.182 5.182 23 C -0.105 4.105 24 C -0.086 4.086 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.189 0.811 35 H 0.202 0.798 36 H 0.181 0.819 37 H 0.108 0.892 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.350 -5.585 -18.016 19.606 hybrid contribution 0.403 0.269 2.058 2.115 sum 5.753 -5.316 -15.958 17.777 Atomic orbital electron populations 1.21615 0.97161 0.99520 0.99477 1.19263 0.92828 0.90336 0.87363 1.01462 1.21328 1.34678 1.08731 0.90875 0.92253 1.25743 0.95400 0.95668 1.02036 1.70046 1.41031 1.20832 1.24331 0.85505 0.77989 0.79153 0.78695 1.20239 1.20980 1.19049 1.64843 1.06675 1.50762 1.01488 1.22573 0.89207 1.00686 0.95229 1.22935 0.97026 1.03790 0.94155 1.23361 0.95894 0.93111 0.84263 0.87722 1.86120 1.80273 1.39492 1.16681 1.20385 0.96173 0.94505 0.86802 1.22094 1.01472 0.95032 1.00971 1.22384 0.97665 1.02507 0.91636 1.23226 0.98066 0.88981 1.00727 1.67733 1.09220 1.16616 1.24603 1.22321 1.01282 1.01007 0.85884 1.23114 0.98818 0.97099 0.89594 0.94293 0.95053 0.92968 0.92901 0.95964 0.90487 0.90853 0.88081 0.82850 0.81115 0.79768 0.81875 0.89157 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.84 71.98 0.64 -5.15 16 2 C 0.21 10.61 1.67 44.17 0.07 10.68 16 3 H -0.03 -1.84 7.98 -2.39 -0.02 -1.86 16 4 C -0.52 -28.22 8.04 25.60 0.21 -28.01 16 5 H 0.06 3.20 7.64 -2.91 -0.02 3.18 16 6 C 0.01 0.56 5.32 84.66 0.45 1.01 16 7 N -0.92 -53.29 11.68 21.45 0.25 -53.04 16 8 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.51 -21.25 5.10 -862.21 -4.40 -25.65 16 13 C 0.05 1.90 5.88 86.45 0.51 2.40 16 14 C -0.14 -3.90 6.37 31.47 0.20 -3.70 16 15 C 0.09 2.52 2.87 31.80 0.09 2.61 16 16 H 0.11 2.52 6.41 -2.39 -0.02 2.51 16 17 O -0.31 -8.83 9.89 -92.52 -0.92 -9.74 16 18 C 0.07 1.68 6.68 22.60 0.15 1.83 16 19 C -0.17 -3.29 8.95 22.56 0.20 -3.08 16 20 C -0.12 -1.85 10.11 22.34 0.23 -1.62 16 21 C 0.05 0.80 11.18 84.69 0.95 1.75 16 22 N -0.47 -10.91 10.36 -195.45 -2.02 -12.94 16 23 C 0.05 1.27 11.14 84.80 0.94 2.21 16 24 C 0.04 1.48 5.09 86.65 0.44 1.92 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.03 1.33 6.91 -2.39 -0.02 1.31 16 27 H 0.05 2.79 6.46 -2.39 -0.02 2.78 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.02 0.92 7.67 -2.39 -0.02 0.91 16 30 H 0.08 2.78 8.10 -2.38 -0.02 2.76 16 31 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.10 2.18 7.75 -2.38 -0.02 2.17 16 33 H 0.15 2.57 5.71 -2.91 -0.02 2.56 16 34 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.09 3.02 7.66 -2.39 -0.02 3.00 16 38 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16 Total: -1.00 -63.69 309.01 1.06 -62.63 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.04 Total: 10.59 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 5.08 Total: -17.14 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -6.17 Total: -91.63 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.92 Total: -9.74 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -63.69 1.06 -62.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127902251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.533 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds