Wall clock time and date at job start Mon Mar 30 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47209 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99833 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00199 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46881 * 90.00212 * 12 10 8 14 14 H 1.48500 * 109.47519 * 210.00051 * 12 10 8 15 15 H 1.48501 * 109.47362 * 330.00383 * 12 10 8 16 16 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 17 17 H 1.09004 * 109.46724 * 180.02562 * 16 2 1 18 18 N 1.46896 * 109.47261 * 59.99962 * 16 2 1 19 19 C 1.50702 * 109.46903 * 299.99558 * 16 2 1 20 20 C 1.38232 * 119.99529 * 79.73536 * 19 16 2 21 21 C 1.38239 * 119.99593 * 179.80876 * 20 19 16 22 22 C 1.38228 * 120.00067 * 0.39370 * 21 20 19 23 23 C 1.38236 * 120.00401 * 359.85445 * 22 21 20 24 24 C 1.38228 * 120.00227 * 260.00079 * 19 16 2 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 29 29 H 1.09000 * 109.47175 * 300.00022 * 7 6 4 30 30 H 1.09002 * 109.47092 * 59.99980 * 7 6 4 31 31 H 0.96997 * 120.00123 * 179.97438 * 11 10 8 32 32 H 1.00897 * 111.00325 * 299.99318 * 18 16 2 33 33 H 1.00902 * 111.00063 * 63.95555 * 18 16 2 34 34 H 1.08001 * 120.00503 * 359.97438 * 20 19 16 35 35 H 1.08007 * 119.99978 * 180.22201 * 21 20 19 36 36 H 1.08000 * 119.99957 * 179.83294 * 22 21 20 37 37 H 1.07993 * 120.00562 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.00462 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 1.6918 -0.2307 -4.8812 9 1 1.0706 0.6472 -4.7820 10 6 2.0239 -0.7023 -6.1335 11 7 1.5856 -0.0823 -7.2073 12 14 3.0977 -2.2211 -6.3049 13 1 2.2391 -3.4320 -6.3492 14 1 3.8888 -2.1293 -7.5583 15 1 4.0190 -2.3098 -5.1436 16 6 2.0400 -0.7213 1.2492 17 1 3.1300 -0.7209 1.2494 18 7 1.5503 -2.1063 1.2492 19 6 1.5377 -0.0109 2.4797 20 6 0.2449 -0.2229 2.9208 21 6 -0.2146 0.4257 4.0518 22 6 0.6160 1.2926 4.7369 23 6 1.9072 1.5086 4.2928 24 6 2.3679 0.8570 3.1640 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.1487 0.5386 -2.5435 29 1 3.2845 -0.9412 -3.6509 30 1 1.8308 -1.9683 -3.6506 31 1 1.8195 -0.4139 -8.0883 32 1 0.5417 -2.1332 1.2493 33 1 1.9258 -2.6226 0.4678 34 1 -0.4053 -0.8974 2.3834 35 1 -1.2235 0.2573 4.3985 36 1 0.2561 1.8014 5.6189 37 1 2.5560 2.1861 4.8278 38 1 3.3767 1.0256 2.8172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131644009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:15 Heat of formation + Delta-G solvation = -20.887333 kcal Electronic energy + Delta-G solvation = -19376.014525 eV Core-core repulsion = 16410.746722 eV Total energy + Delta-G solvation = -2965.267803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27844 -38.92212 -35.92752 -34.41094 -32.53856 -31.18675 -30.97466 -30.30092 -27.84655 -26.07214 -23.65996 -22.53487 -21.96040 -20.54412 -19.45800 -17.39179 -17.01371 -16.19014 -15.88149 -15.60439 -15.03122 -14.97068 -14.69178 -14.30691 -13.90530 -13.60700 -13.47018 -13.19289 -12.68927 -12.64977 -12.35198 -12.24557 -11.88216 -11.57062 -11.29205 -11.09786 -11.03432 -10.89257 -10.81341 -10.02051 -9.55833 -9.29950 -9.00033 -8.88994 -8.82597 -8.47530 -8.23356 -6.26465 -4.29388 1.26328 1.31081 3.07548 3.22856 3.29744 3.37531 3.64229 3.88713 4.28631 4.64443 4.76361 4.79246 4.87030 4.92568 5.01410 5.04761 5.09063 5.19056 5.39865 5.45270 5.53627 5.69946 5.72902 5.87005 5.90830 5.99056 6.10452 6.36205 6.40728 6.57721 6.72634 6.89943 6.99480 7.08971 7.29176 7.33912 7.69284 8.04924 8.42856 8.68034 8.82163 9.33112 10.85436 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.003902 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.402129 B = 7173.856532 C = 7362.701621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.146 4.146 3 H 0.098 0.902 4 C 0.504 3.496 5 O -0.559 6.559 6 N -0.700 5.700 7 C 0.219 3.781 8 C -0.546 4.546 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.878 3.122 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C 0.152 3.848 17 H 0.093 0.907 18 N -0.841 5.841 19 C -0.064 4.064 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.114 4.114 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.397 0.603 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.268 0.732 32 H 0.330 0.670 33 H 0.364 0.636 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 2.858 20.851 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 H 0.116 0.884 4 C 0.290 3.710 5 O -0.439 6.439 6 N -0.347 5.347 7 C 0.097 3.903 8 C -0.584 4.584 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.704 3.296 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.185 1.185 16 C 0.040 3.960 17 H 0.111 0.889 18 N -0.377 5.377 19 C -0.064 4.064 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.231 0.769 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.187 2.053 21.333 21.543 hybrid contribution -0.207 0.015 -1.311 1.327 sum -2.394 2.068 20.022 20.270 Atomic orbital electron populations 1.21967 0.93179 1.02524 1.03326 1.22111 0.98065 1.01973 0.94789 0.88389 1.20471 0.80674 0.84940 0.84959 1.90563 1.39361 1.27211 1.86765 1.46216 1.51347 1.31199 1.05922 1.19517 0.95211 0.93054 0.82492 1.21079 1.33938 1.14445 0.88889 0.90295 1.24803 0.95352 0.97002 0.95453 1.69880 1.44709 1.40166 0.98085 0.86805 0.81285 0.83239 0.78276 1.19832 1.20845 1.18528 1.20054 0.99960 0.87633 0.88397 0.88894 1.59075 1.13157 1.11777 1.53659 1.19803 0.93999 0.96368 0.96242 1.20994 0.95487 0.99312 0.96484 1.21126 0.99746 0.97437 0.95769 1.21109 0.94321 0.99042 1.00039 1.21097 0.96036 0.99951 0.96785 1.21047 0.99699 0.96911 0.95594 0.91509 0.92326 0.90826 0.76933 0.95632 0.96121 0.92201 0.85671 0.81621 0.86064 0.86262 0.86421 0.86232 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 7.68 37.16 0.29 -1.45 16 2 C -0.15 -1.94 2.60 -91.77 -0.24 -2.17 16 3 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.50 9.03 6.96 -10.99 -0.08 8.96 16 5 O -0.56 -11.68 13.87 5.55 0.08 -11.60 16 6 N -0.70 -13.67 5.44 -61.47 -0.33 -14.01 16 7 C 0.22 5.28 4.50 -5.19 -0.02 5.26 16 8 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 9 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 12 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 16 C 0.15 2.00 2.56 -68.87 -0.18 1.82 16 17 H 0.09 1.34 7.96 -51.93 -0.41 0.93 16 18 N -0.84 -11.52 8.93 -5.65 -0.05 -11.57 16 19 C -0.06 -0.74 4.71 -104.63 -0.49 -1.23 16 20 C -0.10 -1.10 7.07 -39.58 -0.28 -1.38 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.11 -1.22 9.67 -39.58 -0.38 -1.61 16 25 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 26 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 27 H 0.07 0.74 5.58 -51.93 -0.29 0.45 16 28 H 0.40 6.95 7.74 -40.82 -0.32 6.63 16 29 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 30 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.33 3.97 5.54 -39.29 -0.22 3.75 16 33 H 0.36 5.79 6.45 -39.29 -0.25 5.54 16 34 H 0.12 1.17 5.84 -52.49 -0.31 0.86 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.17 8.04 -52.48 -0.42 0.75 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -30.76 306.23 -7.60 -38.36 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.99 Total: 12.61 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.01 Total: -9.48 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.39 Total: -51.06 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.76 -7.60 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131644009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.470 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds