Wall clock time and date at job start Mon Mar 30 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47209 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99833 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00199 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46881 * 90.00212 * 12 10 8 14 14 H 1.48500 * 109.47519 * 210.00051 * 12 10 8 15 15 H 1.48501 * 109.47362 * 330.00383 * 12 10 8 16 16 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 17 17 H 1.09004 * 109.46724 * 180.02562 * 16 2 1 18 18 N 1.46896 * 109.47261 * 59.99962 * 16 2 1 19 19 C 1.50702 * 109.46903 * 299.99558 * 16 2 1 20 20 C 1.38232 * 119.99529 * 79.73536 * 19 16 2 21 21 C 1.38239 * 119.99593 * 179.80876 * 20 19 16 22 22 C 1.38228 * 120.00067 * 0.39370 * 21 20 19 23 23 C 1.38236 * 120.00401 * 359.85445 * 22 21 20 24 24 C 1.38228 * 120.00227 * 260.00079 * 19 16 2 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 29 29 H 1.09000 * 109.47175 * 300.00022 * 7 6 4 30 30 H 1.09002 * 109.47092 * 59.99980 * 7 6 4 31 31 H 0.96997 * 120.00123 * 179.97438 * 11 10 8 32 32 H 1.00897 * 111.00325 * 299.99318 * 18 16 2 33 33 H 1.00902 * 111.00063 * 63.95555 * 18 16 2 34 34 H 1.08001 * 120.00503 * 359.97438 * 20 19 16 35 35 H 1.08007 * 119.99978 * 180.22201 * 21 20 19 36 36 H 1.08000 * 119.99957 * 179.83294 * 22 21 20 37 37 H 1.07993 * 120.00562 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.00462 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 1.6918 -0.2307 -4.8812 9 1 1.0706 0.6472 -4.7820 10 6 2.0239 -0.7023 -6.1335 11 7 1.5856 -0.0823 -7.2073 12 14 3.0977 -2.2211 -6.3049 13 1 2.2391 -3.4320 -6.3492 14 1 3.8888 -2.1293 -7.5583 15 1 4.0190 -2.3098 -5.1436 16 6 2.0400 -0.7213 1.2492 17 1 3.1300 -0.7209 1.2494 18 7 1.5503 -2.1063 1.2492 19 6 1.5377 -0.0109 2.4797 20 6 0.2449 -0.2229 2.9208 21 6 -0.2146 0.4257 4.0518 22 6 0.6160 1.2926 4.7369 23 6 1.9072 1.5086 4.2928 24 6 2.3679 0.8570 3.1640 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.1487 0.5386 -2.5435 29 1 3.2845 -0.9412 -3.6509 30 1 1.8308 -1.9683 -3.6506 31 1 1.8195 -0.4139 -8.0883 32 1 0.5417 -2.1332 1.2493 33 1 1.9258 -2.6226 0.4678 34 1 -0.4053 -0.8974 2.3834 35 1 -1.2235 0.2573 4.3985 36 1 0.2561 1.8014 5.6189 37 1 2.5560 2.1861 4.8278 38 1 3.3767 1.0256 2.8172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131644009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:15 Heat of formation + Delta-G solvation = -42.411660 kcal Electronic energy + Delta-G solvation = -19376.947890 eV Core-core repulsion = 16410.746722 eV Total energy + Delta-G solvation = -2966.201168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44635 -40.00415 -37.05930 -36.13189 -34.51423 -32.27559 -31.83336 -31.15352 -29.69763 -27.06113 -25.03839 -23.56294 -23.24233 -21.77844 -20.76443 -19.05997 -18.14753 -17.51141 -17.24400 -16.83941 -16.43434 -16.05365 -15.88856 -15.54603 -15.14873 -14.99437 -14.60987 -14.36246 -14.21529 -14.02445 -13.52425 -13.30882 -13.09294 -12.97412 -12.71402 -12.51157 -12.28621 -11.95581 -11.86085 -11.73495 -11.68481 -10.94543 -10.75438 -10.01377 -9.78641 -9.67642 -9.45660 -8.42603 -6.50076 0.49703 0.57626 1.30843 1.33512 1.45431 1.62765 2.25478 2.37869 2.92818 2.93975 3.62390 3.67596 3.78950 3.97210 4.11870 4.17707 4.23490 4.36515 4.38084 4.60167 4.70854 4.74061 4.79737 4.85995 4.93351 4.99760 5.14792 5.16941 5.22725 5.24230 5.44845 5.63282 5.69589 5.77338 6.04138 6.17014 6.24683 6.50655 6.56929 6.76879 7.12220 7.33732 8.72170 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.003902 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.402129 B = 7173.856532 C = 7362.701621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 H 0.113 0.887 4 C 0.504 3.496 5 O -0.587 6.587 6 N -0.701 5.701 7 C 0.232 3.768 8 C -0.548 4.548 9 H 0.058 0.942 10 C 0.026 3.974 11 N -0.931 5.931 12 Si 0.939 3.061 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.260 1.260 16 C 0.157 3.843 17 H 0.074 0.926 18 N -0.843 5.843 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.407 0.593 29 H 0.012 0.988 30 H 0.013 0.987 31 H 0.273 0.727 32 H 0.339 0.661 33 H 0.351 0.649 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 3.033 22.847 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 H 0.131 0.869 4 C 0.292 3.708 5 O -0.469 6.469 6 N -0.350 5.350 7 C 0.108 3.892 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.174 4.174 11 N -0.570 5.570 12 Si 0.762 3.238 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.185 1.185 16 C 0.044 3.956 17 H 0.092 0.908 18 N -0.378 5.378 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.242 0.758 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.700 2.250 23.363 23.626 hybrid contribution -0.085 0.023 -1.839 1.841 sum -2.785 2.273 21.524 21.822 Atomic orbital electron populations 1.21969 0.91343 1.02888 1.04335 1.22079 0.99391 1.01926 0.92168 0.86912 1.21270 0.79613 0.84469 0.85463 1.90554 1.40512 1.28642 1.87209 1.46067 1.51945 1.31568 1.05396 1.19106 0.94229 0.92685 0.83193 1.21290 1.33250 1.13855 0.90224 0.92408 1.25613 0.96658 0.99902 0.95234 1.69983 1.46281 1.41950 0.98746 0.85838 0.79690 0.79832 0.78397 1.18923 1.19881 1.18475 1.19970 0.98957 0.87471 0.89215 0.90762 1.59057 1.13853 1.12110 1.52804 1.19677 0.94852 0.97253 0.96063 1.21124 0.95151 0.99707 0.97170 1.21432 1.00866 0.96951 0.95202 1.21473 0.94020 0.98564 1.00536 1.21384 0.96705 0.99891 0.96331 1.21219 0.99979 0.97204 0.96271 0.91381 0.92325 0.88898 0.75759 0.96974 0.96866 0.91815 0.84639 0.83137 0.85481 0.84122 0.84017 0.84256 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 7.68 71.98 0.55 -2.54 16 2 C -0.13 -3.37 2.60 -11.54 -0.03 -3.40 16 3 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.50 17.88 6.96 87.66 0.61 18.49 16 5 O -0.59 -24.65 13.87 -3.05 -0.04 -24.69 16 6 N -0.70 -27.28 5.44 -466.78 -2.54 -29.82 16 7 C 0.23 11.18 4.50 85.63 0.38 11.56 16 8 C -0.55 -30.05 9.83 25.60 0.25 -29.79 16 9 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 10 C 0.03 1.48 5.47 84.65 0.46 1.94 16 11 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 12 Si 0.94 43.81 27.47 68.60 1.88 45.69 16 13 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 16 C 0.16 4.00 2.56 44.17 0.11 4.11 16 17 H 0.07 2.15 7.96 -2.39 -0.02 2.14 16 18 N -0.84 -22.66 8.93 -171.80 -1.53 -24.20 16 19 C -0.08 -1.69 4.71 -19.87 -0.09 -1.78 16 20 C -0.11 -2.13 7.07 22.27 0.16 -1.97 16 21 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.55 9.67 22.27 0.22 -2.34 16 25 H 0.07 1.42 7.56 -2.39 -0.02 1.40 16 26 H 0.06 1.23 6.66 -2.39 -0.02 1.21 16 27 H 0.09 1.62 5.58 -2.39 -0.01 1.61 16 28 H 0.41 14.12 7.74 -92.71 -0.72 13.40 16 29 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 30 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.34 7.81 5.54 -89.70 -0.50 7.31 16 33 H 0.35 11.20 6.45 -89.69 -0.58 10.62 16 34 H 0.13 2.16 5.84 -2.91 -0.02 2.14 16 35 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.12 2.28 8.04 -2.91 -0.02 2.26 16 Total: -1.00 -65.80 306.23 0.61 -65.18 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.75 Total: 33.94 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 3.30 Total: -11.03 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -3.77 Total: -109.10 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -65.80 0.61 -65.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131644009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.773 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds