Wall clock time and date at job start Mon Mar 30 2020 04:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 C 1.50700 * 109.46651 * 240.00211 * 2 1 3 5 5 O 1.21279 * 120.00104 * 239.99714 * 4 2 1 6 6 N 1.34776 * 120.00345 * 60.00135 * 4 2 1 7 7 C 1.46499 * 120.00329 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47233 * 179.97438 * 7 6 4 9 9 H 1.08002 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99736 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00579 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99670 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46898 * 59.99955 * 12 10 8 14 14 H 1.48496 * 109.47028 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46834 * 299.99751 * 12 10 8 16 16 C 1.52998 * 109.47362 * 120.00292 * 2 1 3 17 17 H 1.08998 * 109.47231 * 59.99762 * 16 2 1 18 18 N 1.46895 * 109.47067 * 179.97438 * 16 2 1 19 19 C 1.50703 * 109.46884 * 300.00211 * 16 2 1 20 20 C 1.38235 * 120.00293 * 99.99965 * 19 16 2 21 21 C 1.38230 * 119.99899 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99481 * 280.01846 * 19 16 2 25 25 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99831 * 1 2 3 27 27 H 1.09000 * 109.47284 * 59.99574 * 1 2 3 28 28 H 0.97012 * 119.99576 * 359.97438 * 6 4 2 29 29 H 1.08998 * 109.47203 * 299.99696 * 7 6 4 30 30 H 1.08998 * 109.46806 * 59.99968 * 7 6 4 31 31 H 0.96999 * 120.00624 * 180.02562 * 11 10 8 32 32 H 1.00897 * 111.00299 * 296.04353 * 18 16 2 33 33 H 1.00900 * 110.99811 * 60.00356 * 18 16 2 34 34 H 1.08001 * 119.99730 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00441 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2499 -2.4546 7 6 2.1953 -0.9402 -3.6508 8 6 1.6923 -0.2301 -4.8813 9 1 1.0711 0.6478 -4.7821 10 6 2.0252 -0.7013 -6.1335 11 7 2.7812 -1.7706 -6.2543 12 14 1.4023 0.1793 -7.6587 13 1 1.8974 1.5793 -7.6588 14 1 1.8966 -0.5212 -8.8712 15 1 -0.0826 0.1793 -7.6585 16 6 2.0401 -0.7213 1.2492 17 1 1.6767 -1.7489 1.2492 18 7 3.5090 -0.7218 1.2488 19 6 1.5377 -0.0109 2.4797 20 6 0.4427 -0.5044 3.1641 21 6 -0.0184 0.1475 4.2924 22 6 0.6160 1.2924 4.7370 23 6 1.7119 1.7851 4.0534 24 6 2.1717 1.1344 2.9237 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.1486 0.5387 -2.5435 29 1 3.2853 -0.9397 -3.6508 30 1 1.8323 -1.9679 -3.6510 31 1 3.0157 -2.1019 -7.1353 32 1 3.8703 -1.2481 0.4675 33 1 3.8709 0.2201 1.2487 34 1 -0.0530 -1.3988 2.8167 35 1 -0.8741 -0.2377 4.8269 36 1 0.2531 1.8043 5.6160 37 1 2.2074 2.6798 4.4004 38 1 3.0267 1.5203 2.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131644383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:18 Heat of formation + Delta-G solvation = -28.264124 kcal Electronic energy + Delta-G solvation = -19268.804865 eV Core-core repulsion = 16303.217180 eV Total energy + Delta-G solvation = -2965.587685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09032 -38.81806 -35.67391 -34.27277 -32.60560 -31.47367 -30.88139 -30.26308 -27.27533 -25.06290 -23.93848 -22.62842 -22.24986 -20.51878 -19.41087 -17.60220 -16.87469 -16.02589 -15.48511 -15.36042 -15.02769 -14.87405 -14.60364 -14.42631 -13.77296 -13.42800 -13.20937 -13.11854 -12.57347 -12.34169 -12.10901 -12.01513 -11.91671 -11.65741 -11.20849 -11.06833 -10.99662 -10.89302 -10.88241 -10.35612 -9.46798 -9.14254 -8.96116 -8.86950 -8.78088 -8.38059 -7.96636 -6.21097 -4.28689 1.30019 1.34560 3.21863 3.23084 3.27106 3.28437 3.69887 3.98735 4.31480 4.68208 4.81081 4.88485 4.89308 4.96541 5.06497 5.14318 5.15909 5.37641 5.44669 5.52195 5.56473 5.75752 5.80776 5.93339 5.96529 6.06295 6.21699 6.39612 6.43708 6.62889 6.93378 7.22601 7.28068 7.39599 7.44789 7.59442 7.76126 7.91720 8.53441 8.70818 9.00013 9.38082 10.88948 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041181 B = 0.003719 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.769463 B = 7527.248121 C = 7770.497941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 H 0.090 0.910 4 C 0.502 3.498 5 O -0.557 6.557 6 N -0.707 5.707 7 C 0.249 3.751 8 C -0.546 4.546 9 H 0.062 0.938 10 C 0.065 3.935 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.152 3.848 17 H 0.093 0.907 18 N -0.842 5.842 19 C -0.060 4.060 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.391 0.609 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.366 0.634 33 H 0.328 0.672 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 7.227 18.225 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 H 0.108 0.892 4 C 0.286 3.714 5 O -0.437 6.437 6 N -0.354 5.354 7 C 0.128 3.872 8 C -0.584 4.584 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.040 3.960 17 H 0.111 0.889 18 N -0.377 5.377 19 C -0.061 4.061 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.125 4.125 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.650 5.973 18.774 20.242 hybrid contribution -0.684 1.365 -1.910 2.445 sum -5.334 7.338 16.864 19.149 Atomic orbital electron populations 1.21747 0.92841 1.02782 1.02539 1.22217 0.98542 1.00993 0.95059 0.89189 1.20425 0.81079 0.84906 0.84959 1.90569 1.39461 1.26949 1.86681 1.46498 1.51262 1.31005 1.06613 1.19123 0.95277 0.92912 0.79839 1.21179 1.33392 1.13259 0.90607 0.91991 1.24947 0.94785 0.94955 0.99243 1.69955 1.35513 1.22362 1.24381 0.86471 0.79177 0.79609 0.81645 1.20042 1.21014 1.20037 1.20104 0.88923 0.98640 0.88368 0.88891 1.59067 1.05484 1.19297 1.53819 1.19819 0.95047 0.95058 0.96178 1.21044 0.96515 1.00061 0.95485 1.21095 1.00028 0.95987 0.96760 1.21100 0.96602 0.96882 1.00080 1.21110 0.96999 0.99934 0.95826 1.20933 0.99501 0.95313 0.96795 0.92018 0.91547 0.91971 0.77661 0.95504 0.95468 0.92326 0.81423 0.85926 0.86053 0.86258 0.86458 0.86319 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.68 37.16 0.32 -1.40 16 2 C -0.14 -2.01 2.46 -91.77 -0.23 -2.24 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.50 9.49 6.96 -10.99 -0.08 9.42 16 5 O -0.56 -12.42 13.87 5.56 0.08 -12.34 16 6 N -0.71 -14.44 5.44 -61.47 -0.33 -14.77 16 7 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 8 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 9 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.88 -25.86 13.29 55.43 0.74 -25.12 16 12 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.15 2.10 2.26 -68.87 -0.16 1.94 16 17 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 18 N -0.84 -12.18 8.99 -5.66 -0.05 -12.23 16 19 C -0.06 -0.73 4.05 -104.62 -0.42 -1.15 16 20 C -0.11 -1.23 8.71 -39.59 -0.34 -1.58 16 21 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 22 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.11 -1.18 9.30 -39.58 -0.37 -1.55 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.72 6.64 -51.93 -0.34 0.37 16 27 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 28 H 0.39 6.97 7.74 -40.81 -0.32 6.65 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.37 6.17 6.45 -39.29 -0.25 5.92 16 33 H 0.33 4.15 7.35 -39.29 -0.29 3.86 16 34 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.20 6.67 -52.49 -0.35 0.85 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -30.64 316.21 -8.01 -38.66 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.27 Total: 13.54 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.91 Total: -8.14 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.35 Total: -52.12 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.64 -8.01 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131644383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.391 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds