Wall clock time and date at job start Mon Mar 30 2020 04:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 C 1.50700 * 109.46651 * 240.00211 * 2 1 3 5 5 O 1.21279 * 120.00104 * 239.99714 * 4 2 1 6 6 N 1.34776 * 120.00345 * 60.00135 * 4 2 1 7 7 C 1.46499 * 120.00329 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47233 * 179.97438 * 7 6 4 9 9 H 1.08002 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99736 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00579 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99670 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46898 * 59.99955 * 12 10 8 14 14 H 1.48496 * 109.47028 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46834 * 299.99751 * 12 10 8 16 16 C 1.52998 * 109.47362 * 120.00292 * 2 1 3 17 17 H 1.08998 * 109.47231 * 59.99762 * 16 2 1 18 18 N 1.46895 * 109.47067 * 179.97438 * 16 2 1 19 19 C 1.50703 * 109.46884 * 300.00211 * 16 2 1 20 20 C 1.38235 * 120.00293 * 99.99965 * 19 16 2 21 21 C 1.38230 * 119.99899 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99481 * 280.01846 * 19 16 2 25 25 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99831 * 1 2 3 27 27 H 1.09000 * 109.47284 * 59.99574 * 1 2 3 28 28 H 0.97012 * 119.99576 * 359.97438 * 6 4 2 29 29 H 1.08998 * 109.47203 * 299.99696 * 7 6 4 30 30 H 1.08998 * 109.46806 * 59.99968 * 7 6 4 31 31 H 0.96999 * 120.00624 * 180.02562 * 11 10 8 32 32 H 1.00897 * 111.00299 * 296.04353 * 18 16 2 33 33 H 1.00900 * 110.99811 * 60.00356 * 18 16 2 34 34 H 1.08001 * 119.99730 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00441 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2499 -2.4546 7 6 2.1953 -0.9402 -3.6508 8 6 1.6923 -0.2301 -4.8813 9 1 1.0711 0.6478 -4.7821 10 6 2.0252 -0.7013 -6.1335 11 7 2.7812 -1.7706 -6.2543 12 14 1.4023 0.1793 -7.6587 13 1 1.8974 1.5793 -7.6588 14 1 1.8966 -0.5212 -8.8712 15 1 -0.0826 0.1793 -7.6585 16 6 2.0401 -0.7213 1.2492 17 1 1.6767 -1.7489 1.2492 18 7 3.5090 -0.7218 1.2488 19 6 1.5377 -0.0109 2.4797 20 6 0.4427 -0.5044 3.1641 21 6 -0.0184 0.1475 4.2924 22 6 0.6160 1.2924 4.7370 23 6 1.7119 1.7851 4.0534 24 6 2.1717 1.1344 2.9237 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.1486 0.5387 -2.5435 29 1 3.2853 -0.9397 -3.6508 30 1 1.8323 -1.9679 -3.6510 31 1 3.0157 -2.1019 -7.1353 32 1 3.8703 -1.2481 0.4675 33 1 3.8709 0.2201 1.2487 34 1 -0.0530 -1.3988 2.8167 35 1 -0.8741 -0.2377 4.8269 36 1 0.2531 1.8043 5.6160 37 1 2.2074 2.6798 4.4004 38 1 3.0267 1.5203 2.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131644383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:18 Heat of formation + Delta-G solvation = -49.642226 kcal Electronic energy + Delta-G solvation = -19269.731889 eV Core-core repulsion = 16303.217180 eV Total energy + Delta-G solvation = -2966.514709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33580 -39.96885 -36.89706 -36.08696 -34.50390 -32.70940 -31.71726 -31.13979 -29.23804 -26.13124 -25.45644 -23.91969 -23.33764 -21.70882 -20.86247 -19.04233 -18.20598 -17.38470 -17.14990 -16.60765 -16.37909 -16.27688 -15.82943 -15.40371 -15.16225 -14.73681 -14.30108 -14.14064 -14.05217 -13.95906 -13.50756 -13.11244 -13.04822 -13.00877 -12.90258 -12.68746 -12.27656 -12.22739 -11.88169 -11.75053 -11.53705 -10.81732 -10.70802 -9.89364 -9.76898 -9.72873 -9.44947 -8.31397 -6.48440 0.50221 0.58274 1.41619 1.45329 1.53670 1.66893 2.28864 2.51597 2.94619 3.03434 3.62004 3.66140 3.79822 3.97289 4.13851 4.22101 4.29164 4.33660 4.40580 4.58242 4.71749 4.82146 4.85664 4.95032 5.08877 5.14936 5.19878 5.21367 5.25222 5.44109 5.62306 5.64462 5.69800 5.78064 5.82139 6.16778 6.22538 6.53853 6.62273 6.83458 7.20659 7.42342 8.80343 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041181 B = 0.003719 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.769463 B = 7527.248121 C = 7770.497941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 H 0.111 0.889 4 C 0.499 3.501 5 O -0.593 6.593 6 N -0.703 5.703 7 C 0.267 3.733 8 C -0.559 4.559 9 H 0.082 0.918 10 C 0.005 3.995 11 N -0.930 5.930 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.285 1.285 15 H -0.262 1.262 16 C 0.157 3.843 17 H 0.071 0.929 18 N -0.846 5.846 19 C -0.075 4.075 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.406 0.594 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.269 0.731 32 H 0.350 0.650 33 H 0.339 0.661 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 9.778 19.342 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 H 0.129 0.871 4 C 0.286 3.714 5 O -0.475 6.475 6 N -0.352 5.352 7 C 0.144 3.856 8 C -0.597 4.597 9 H 0.100 0.900 10 C -0.195 4.195 11 N -0.568 5.568 12 Si 0.806 3.194 13 H -0.186 1.186 14 H -0.211 1.211 15 H -0.187 1.187 16 C 0.044 3.956 17 H 0.089 0.911 18 N -0.379 5.379 19 C -0.075 4.075 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.242 0.758 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.382 8.567 19.941 22.622 hybrid contribution -0.124 0.535 -2.128 2.198 sum -6.506 9.102 17.812 21.034 Atomic orbital electron populations 1.21745 0.91035 1.02760 1.03881 1.22163 0.99812 1.01085 0.92022 0.87089 1.21374 0.79849 0.84391 0.85758 1.90559 1.40873 1.28782 1.87264 1.46230 1.51824 1.31405 1.05710 1.18542 0.92936 0.91664 0.82453 1.21584 1.33454 1.13786 0.90853 0.89969 1.26047 0.94695 0.95588 1.03125 1.70119 1.37059 1.24301 1.25350 0.85228 0.79005 0.78510 0.76620 1.18637 1.21075 1.18673 1.20018 0.88344 0.97797 0.89413 0.91102 1.59045 1.06192 1.19850 1.52846 1.19645 0.96143 0.95836 0.95914 1.21187 0.96461 1.00468 0.96142 1.21388 1.00569 0.95944 0.96195 1.21473 0.96012 0.96556 1.00528 1.21406 0.97146 1.00477 0.95196 1.21074 0.99754 0.95237 0.97578 0.92800 0.89414 0.91315 0.75813 0.99281 0.99459 0.92206 0.83196 0.84783 0.85816 0.84097 0.83918 0.84208 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.68 71.98 0.62 -2.49 16 2 C -0.13 -3.47 2.46 -11.54 -0.03 -3.49 16 3 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 4 C 0.50 19.32 6.96 87.66 0.61 19.93 16 5 O -0.59 -27.81 13.87 -3.03 -0.04 -27.85 16 6 N -0.70 -29.20 5.44 -466.79 -2.54 -31.74 16 7 C 0.27 14.50 5.43 85.63 0.46 14.96 16 8 C -0.56 -30.21 9.28 25.60 0.24 -29.98 16 9 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 10 C 0.01 0.29 5.46 84.66 0.46 0.76 16 11 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 12 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 13 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 14 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 16 C 0.16 4.31 2.26 44.17 0.10 4.41 16 17 H 0.07 2.24 7.96 -2.39 -0.02 2.22 16 18 N -0.85 -24.85 8.99 -171.81 -1.54 -26.39 16 19 C -0.07 -1.70 4.05 -19.87 -0.08 -1.78 16 20 C -0.12 -2.52 8.71 22.27 0.19 -2.32 16 21 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.12 -2.38 9.30 22.27 0.21 -2.17 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.67 6.64 -2.38 -0.02 1.66 16 27 H 0.07 1.49 7.56 -2.39 -0.02 1.47 16 28 H 0.41 14.17 7.74 -92.70 -0.72 13.45 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.35 12.36 6.45 -89.70 -0.58 11.78 16 33 H 0.34 8.49 7.35 -89.69 -0.66 7.83 16 34 H 0.12 2.35 8.04 -2.91 -0.02 2.33 16 35 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.12 2.28 6.67 -2.91 -0.02 2.26 16 Total: -1.00 -68.57 316.21 0.78 -67.79 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.87 Total: 37.28 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.46 Total: -7.54 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.80 Total: -113.71 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.85 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.57 0.78 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131644383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.149 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds