Wall clock time and date at job start Mon Mar 30 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.50706 * 109.47018 * 119.99846 * 2 1 3 5 5 O 1.21282 * 120.00078 * 114.51723 * 4 2 1 6 6 N 1.34777 * 119.99906 * 294.24194 * 4 2 1 7 7 C 1.46497 * 119.99852 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.47184 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99527 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00040 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99843 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00349 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47233 * 89.99755 * 12 10 8 14 14 H 1.48490 * 109.47479 * 210.00220 * 12 10 8 15 15 H 1.48502 * 109.46789 * 330.00504 * 12 10 8 16 16 C 1.50695 * 109.47391 * 239.99810 * 2 1 3 17 17 C 1.38285 * 119.92725 * 174.11859 * 16 2 1 18 18 C 1.38108 * 120.07706 * 179.72541 * 17 16 2 19 19 C 1.38917 * 119.91807 * 0.54996 * 18 17 16 20 20 N 1.39679 * 120.07020 * 179.70545 * 19 18 17 21 21 C 1.38901 * 119.85567 * 359.72404 * 19 18 17 22 22 C 1.38104 * 119.92425 * 0.02562 * 21 19 18 23 23 H 1.09003 * 109.47399 * 299.99908 * 1 2 3 24 24 H 1.08993 * 109.47308 * 60.00333 * 1 2 3 25 25 H 1.09005 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47292 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46627 * 300.00089 * 3 2 1 28 28 H 1.09003 * 109.46857 * 59.99760 * 3 2 1 29 29 H 0.97006 * 119.99814 * 359.97438 * 6 4 2 30 30 H 1.09000 * 109.47165 * 299.99497 * 7 6 4 31 31 H 1.08996 * 109.47718 * 59.99531 * 7 6 4 32 32 H 0.97001 * 120.00394 * 179.97438 * 11 10 8 33 33 H 1.08008 * 119.95902 * 359.97438 * 17 16 2 34 34 H 1.07992 * 120.03916 * 180.27020 * 18 17 16 35 35 H 0.96993 * 120.00212 * 180.02562 * 20 19 18 36 36 H 0.97000 * 119.99796 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.04079 * 179.97438 * 21 19 18 38 38 H 1.08011 * 119.96480 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6454 -1.7512 1.1221 6 7 1.8051 -0.1862 2.4512 7 6 2.2939 -0.8765 3.6473 8 6 1.9107 -0.0889 4.8737 9 1 1.3586 0.8338 4.7722 10 6 2.2648 -0.5463 6.1252 11 7 1.9308 0.1413 7.1954 12 14 3.2190 -2.1425 6.3009 13 1 4.6755 -1.8549 6.2665 14 1 2.8721 -2.7870 7.5929 15 1 2.8681 -3.0545 5.1827 16 6 2.0324 -0.7104 -1.2304 17 6 3.3863 -0.7306 -1.5109 18 6 3.8507 -1.3855 -2.6346 19 6 2.9547 -2.0148 -3.4896 20 7 3.4203 -2.6729 -4.6303 21 6 1.5948 -1.9878 -3.2079 22 6 1.1378 -1.3354 -2.0797 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.3185 0.6485 2.5377 30 1 1.8491 -1.8702 3.7006 31 1 3.3790 -0.9663 3.5972 32 1 2.1796 -0.1806 8.0760 33 1 4.0818 -0.2369 -0.8482 34 1 4.9086 -1.4046 -2.8507 35 1 2.7938 -3.1116 -5.2268 36 1 4.3702 -2.6912 -4.8259 37 1 0.8956 -2.4757 -3.8708 38 1 0.0804 -1.3137 -1.8603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132400710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:59 Heat of formation + Delta-G solvation = -23.015498 kcal Electronic energy + Delta-G solvation = -19494.307120 eV Core-core repulsion = 16528.947033 eV Total energy + Delta-G solvation = -2965.360087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19684 -38.51952 -35.68638 -34.27221 -33.26101 -32.15896 -30.90898 -28.20260 -27.44730 -27.29327 -23.68471 -22.36821 -22.25267 -20.81319 -19.09754 -17.33448 -17.03154 -16.75507 -16.11606 -15.49161 -14.64653 -14.61603 -14.19189 -14.08357 -13.89664 -13.33719 -13.21664 -12.97890 -12.61864 -12.41535 -12.29364 -11.95555 -11.85473 -11.84520 -11.35310 -11.06107 -10.79188 -10.73111 -10.51537 -10.32963 -9.94028 -9.45755 -8.96646 -8.75197 -8.73283 -8.06165 -7.39802 -6.19140 -4.20903 1.61618 1.73292 3.28074 3.34824 3.35287 3.44623 3.81499 3.89145 4.27906 4.36186 4.77014 4.91521 5.10799 5.12932 5.16252 5.24211 5.44050 5.54923 5.65628 5.73733 5.85693 5.89593 5.94541 5.96906 6.18897 6.20703 6.27254 6.44144 6.59433 6.86240 6.92283 6.98934 7.12006 7.29920 7.44681 7.49450 7.68706 8.18770 8.58407 8.78895 9.03230 9.41792 10.92876 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.004537 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.568023 B = 6170.075862 C = 6632.286305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C -0.138 4.138 4 C 0.509 3.491 5 O -0.549 6.549 6 N -0.705 5.705 7 C 0.220 3.780 8 C -0.542 4.542 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.893 5.893 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.261 1.261 16 C -0.104 4.104 17 C -0.043 4.043 18 C -0.197 4.197 19 C 0.207 3.793 20 N -0.884 5.884 21 C -0.201 4.201 22 C -0.068 4.068 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.394 0.606 36 H 0.395 0.605 37 H 0.115 0.885 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -0.348 -21.809 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 C -0.195 4.195 4 C 0.293 3.707 5 O -0.427 6.427 6 N -0.353 5.353 7 C 0.098 3.902 8 C -0.579 4.579 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.531 5.531 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.106 4.106 17 C -0.062 4.062 18 C -0.220 4.220 19 C 0.104 3.896 20 N -0.423 5.423 21 C -0.223 4.223 22 C -0.087 4.087 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.222 0.778 36 H 0.223 0.777 37 H 0.133 0.867 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.141 -1.072 -21.589 21.616 hybrid contribution 0.453 -0.653 0.090 0.800 sum 0.312 -1.725 -21.500 21.571 Atomic orbital electron populations 1.21912 0.92589 1.02650 1.02674 1.19639 0.96920 0.95835 0.91807 1.21890 1.01691 0.93373 1.02563 1.20347 0.80235 0.85516 0.84560 1.90655 1.41524 1.23748 1.86763 1.46172 1.56607 1.26543 1.06011 1.19469 0.94628 0.93509 0.82572 1.21104 1.38012 1.09713 0.89121 0.90269 1.24789 0.95192 0.97134 0.95490 1.69881 1.46111 1.38865 0.98228 0.86826 0.80746 0.84101 0.78082 1.19879 1.20933 1.18514 1.19066 0.93436 1.02248 0.95879 1.20661 0.94896 0.95908 0.94729 1.20483 0.98433 1.05434 0.97607 1.17755 0.92842 0.91795 0.87231 1.42414 1.10297 1.63031 1.26586 1.20457 0.93302 1.07661 1.00925 1.20851 0.99446 0.95182 0.93186 0.91548 0.91468 0.91862 0.92041 0.91653 0.91593 0.77111 0.95838 0.96283 0.92306 0.86483 0.86638 0.77798 0.77748 0.86673 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.11 37.16 0.26 -1.47 16 2 C -0.04 -0.57 0.72 -156.81 -0.11 -0.68 16 3 C -0.14 -1.71 8.07 37.16 0.30 -1.41 16 4 C 0.51 10.01 6.35 -10.98 -0.07 9.94 16 5 O -0.55 -12.94 15.54 5.56 0.09 -12.85 16 6 N -0.70 -14.55 5.38 -61.47 -0.33 -14.88 16 7 C 0.22 5.52 4.50 -5.19 -0.02 5.50 16 8 C -0.54 -14.98 9.83 -34.44 -0.34 -15.31 16 9 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 10 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 12 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 16 C -0.10 -1.55 4.24 -104.59 -0.44 -1.99 16 17 C -0.04 -0.64 8.37 -39.61 -0.33 -0.98 16 18 C -0.20 -2.61 9.90 -39.38 -0.39 -3.00 16 19 C 0.21 2.51 6.75 -83.79 -0.57 1.94 16 20 N -0.88 -7.51 9.09 32.41 0.29 -7.21 16 21 C -0.20 -2.46 9.90 -39.39 -0.39 -2.85 16 22 C -0.07 -0.91 8.98 -39.61 -0.36 -1.26 16 23 H 0.07 0.79 7.99 -51.93 -0.41 0.38 16 24 H 0.07 0.67 7.77 -51.93 -0.40 0.26 16 25 H 0.06 0.81 7.24 -51.93 -0.38 0.44 16 26 H 0.06 0.79 7.07 -51.93 -0.37 0.42 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.78 7.26 -51.93 -0.38 0.41 16 29 H 0.39 7.22 7.24 -40.82 -0.30 6.93 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.12 1.75 7.22 -52.48 -0.38 1.37 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.39 2.58 8.84 -40.82 -0.36 2.21 16 36 H 0.39 2.69 8.84 -40.82 -0.36 2.33 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.42 5.90 -52.48 -0.31 1.11 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -33.40 312.93 -6.94 -40.35 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.26 Total: 8.19 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.55 Total: -9.46 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.74 Total: -48.00 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.40 -6.94 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132400710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.332 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds