Wall clock time and date at job start Mon Mar 30 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.50706 * 109.47018 * 119.99846 * 2 1 3 5 5 O 1.21282 * 120.00078 * 114.51723 * 4 2 1 6 6 N 1.34777 * 119.99906 * 294.24194 * 4 2 1 7 7 C 1.46497 * 119.99852 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.47184 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99527 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00040 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99843 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00349 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47233 * 89.99755 * 12 10 8 14 14 H 1.48490 * 109.47479 * 210.00220 * 12 10 8 15 15 H 1.48502 * 109.46789 * 330.00504 * 12 10 8 16 16 C 1.50695 * 109.47391 * 239.99810 * 2 1 3 17 17 C 1.38285 * 119.92725 * 174.11859 * 16 2 1 18 18 C 1.38108 * 120.07706 * 179.72541 * 17 16 2 19 19 C 1.38917 * 119.91807 * 0.54996 * 18 17 16 20 20 N 1.39679 * 120.07020 * 179.70545 * 19 18 17 21 21 C 1.38901 * 119.85567 * 359.72404 * 19 18 17 22 22 C 1.38104 * 119.92425 * 0.02562 * 21 19 18 23 23 H 1.09003 * 109.47399 * 299.99908 * 1 2 3 24 24 H 1.08993 * 109.47308 * 60.00333 * 1 2 3 25 25 H 1.09005 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47292 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46627 * 300.00089 * 3 2 1 28 28 H 1.09003 * 109.46857 * 59.99760 * 3 2 1 29 29 H 0.97006 * 119.99814 * 359.97438 * 6 4 2 30 30 H 1.09000 * 109.47165 * 299.99497 * 7 6 4 31 31 H 1.08996 * 109.47718 * 59.99531 * 7 6 4 32 32 H 0.97001 * 120.00394 * 179.97438 * 11 10 8 33 33 H 1.08008 * 119.95902 * 359.97438 * 17 16 2 34 34 H 1.07992 * 120.03916 * 180.27020 * 18 17 16 35 35 H 0.96993 * 120.00212 * 180.02562 * 20 19 18 36 36 H 0.97000 * 119.99796 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.04079 * 179.97438 * 21 19 18 38 38 H 1.08011 * 119.96480 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6454 -1.7512 1.1221 6 7 1.8051 -0.1862 2.4512 7 6 2.2939 -0.8765 3.6473 8 6 1.9107 -0.0889 4.8737 9 1 1.3586 0.8338 4.7722 10 6 2.2648 -0.5463 6.1252 11 7 1.9308 0.1413 7.1954 12 14 3.2190 -2.1425 6.3009 13 1 4.6755 -1.8549 6.2665 14 1 2.8721 -2.7870 7.5929 15 1 2.8681 -3.0545 5.1827 16 6 2.0324 -0.7104 -1.2304 17 6 3.3863 -0.7306 -1.5109 18 6 3.8507 -1.3855 -2.6346 19 6 2.9547 -2.0148 -3.4896 20 7 3.4203 -2.6729 -4.6303 21 6 1.5948 -1.9878 -3.2079 22 6 1.1378 -1.3354 -2.0797 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.3185 0.6485 2.5377 30 1 1.8491 -1.8702 3.7006 31 1 3.3790 -0.9663 3.5972 32 1 2.1796 -0.1806 8.0760 33 1 4.0818 -0.2369 -0.8482 34 1 4.9086 -1.4046 -2.8507 35 1 2.7938 -3.1116 -5.2268 36 1 4.3702 -2.6912 -4.8259 37 1 0.8956 -2.4757 -3.8708 38 1 0.0804 -1.3137 -1.8603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132400710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:59 Heat of formation + Delta-G solvation = -46.908635 kcal Electronic energy + Delta-G solvation = -19495.343205 eV Core-core repulsion = 16528.947033 eV Total energy + Delta-G solvation = -2966.396172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46205 -39.76384 -36.83172 -36.13491 -34.59445 -33.89120 -31.88636 -29.97190 -28.61644 -28.26907 -25.15002 -23.82537 -23.34532 -22.25327 -20.62181 -18.90674 -18.21048 -17.77048 -17.49534 -17.04228 -16.32580 -16.14930 -15.59923 -15.15223 -15.04368 -14.87556 -14.42413 -14.33381 -14.10335 -13.94990 -13.34798 -13.25763 -13.14845 -13.05849 -12.80445 -12.70632 -12.35905 -11.96924 -11.85498 -11.62864 -11.52886 -11.26174 -10.91999 -10.53850 -9.89123 -9.73489 -8.40225 -8.28540 -6.46642 0.62428 0.72024 1.31224 1.33575 1.46438 1.79276 2.27472 2.50046 2.95134 3.07162 3.11109 3.67383 3.87691 4.03395 4.19899 4.20253 4.22855 4.56620 4.72604 4.76401 4.81106 4.89627 4.91114 4.99255 5.02411 5.03192 5.21265 5.24551 5.26674 5.30247 5.48285 5.55795 5.60974 5.89794 6.04928 6.10324 6.54248 6.66569 6.88766 7.06983 7.16486 7.45704 8.74579 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.004537 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.568023 B = 6170.075862 C = 6632.286305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.135 4.135 4 C 0.507 3.493 5 O -0.590 6.590 6 N -0.704 5.704 7 C 0.233 3.767 8 C -0.544 4.544 9 H 0.061 0.939 10 C 0.028 3.972 11 N -0.930 5.930 12 Si 0.935 3.065 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.264 1.264 16 C -0.128 4.128 17 C -0.063 4.063 18 C -0.212 4.212 19 C 0.208 3.792 20 N -0.870 5.870 21 C -0.207 4.207 22 C -0.073 4.073 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.407 0.593 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.272 0.728 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.407 0.593 36 H 0.404 0.596 37 H 0.141 0.859 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -0.876 -23.928 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.193 4.193 4 C 0.294 3.706 5 O -0.471 6.471 6 N -0.353 5.353 7 C 0.109 3.891 8 C -0.582 4.582 9 H 0.079 0.921 10 C -0.172 4.172 11 N -0.569 5.569 12 Si 0.759 3.241 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.188 1.188 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.235 4.235 19 C 0.103 3.897 20 N -0.410 5.410 21 C -0.230 4.230 22 C -0.091 4.091 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.243 0.757 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.236 0.764 36 H 0.233 0.767 37 H 0.159 0.841 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.559 -1.586 -23.752 23.811 hybrid contribution 0.585 -0.486 0.653 1.002 sum 0.026 -2.073 -23.099 23.192 Atomic orbital electron populations 1.21953 0.90516 1.02791 1.04382 1.19617 0.98399 0.96223 0.88932 1.21908 1.01168 0.92163 1.04030 1.21329 0.78902 0.84994 0.85353 1.90622 1.43262 1.25794 1.87400 1.46036 1.56938 1.26918 1.05435 1.19065 0.93810 0.92794 0.83455 1.21284 1.37419 1.09254 0.90276 0.92112 1.25560 0.96131 1.00233 0.95282 1.69974 1.47427 1.40614 0.98880 0.85891 0.79701 0.80242 0.78254 1.19032 1.19629 1.18833 1.19160 0.93735 1.03777 0.96419 1.20726 0.95108 0.96900 0.95460 1.20670 0.99479 1.05737 0.97609 1.17888 0.92869 0.91221 0.87749 1.42388 1.11275 1.61876 1.25458 1.20791 0.93855 1.07330 1.01001 1.21108 1.00162 0.94654 0.93207 0.91293 0.88325 0.92508 0.93009 0.89035 0.91191 0.75746 0.97304 0.97422 0.91834 0.87822 0.85410 0.76374 0.76660 0.84143 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 7.11 71.98 0.51 -2.63 16 2 C -0.03 -0.81 0.72 -53.67 -0.04 -0.85 16 3 C -0.14 -3.20 8.07 71.98 0.58 -2.62 16 4 C 0.51 20.02 6.35 87.66 0.56 20.57 16 5 O -0.59 -28.28 15.54 -3.04 -0.05 -28.33 16 6 N -0.70 -29.28 5.38 -466.78 -2.51 -31.79 16 7 C 0.23 11.80 4.50 85.64 0.39 12.18 16 8 C -0.54 -30.55 9.83 25.60 0.25 -30.30 16 9 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 10 C 0.03 1.62 5.47 84.65 0.46 2.09 16 11 N -0.93 -55.97 13.96 21.44 0.30 -55.67 16 12 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.26 -12.74 6.54 99.48 0.65 -12.09 16 16 C -0.13 -3.69 4.24 -19.84 -0.08 -3.77 16 17 C -0.06 -1.88 8.37 22.25 0.19 -1.69 16 18 C -0.21 -5.42 9.90 22.40 0.22 -5.20 16 19 C 0.21 4.60 6.75 38.21 0.26 4.86 16 20 N -0.87 -12.40 9.09 -51.37 -0.47 -12.87 16 21 C -0.21 -4.54 9.90 22.40 0.22 -4.32 16 22 C -0.07 -1.79 8.98 22.25 0.20 -1.59 16 23 H 0.07 1.51 7.99 -2.39 -0.02 1.49 16 24 H 0.10 1.62 7.77 -2.39 -0.02 1.60 16 25 H 0.06 1.35 7.24 -2.38 -0.02 1.34 16 26 H 0.05 1.31 7.07 -2.39 -0.02 1.29 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.57 7.26 -2.39 -0.02 1.55 16 29 H 0.41 14.88 7.24 -92.70 -0.67 14.21 16 30 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 31 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.10 3.22 7.22 -2.91 -0.02 3.20 16 34 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.41 4.02 8.84 -92.71 -0.82 3.20 16 36 H 0.40 4.47 8.84 -92.71 -0.82 3.65 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.14 2.84 5.90 -2.90 -0.02 2.83 16 Total: -1.00 -72.20 312.93 1.60 -70.60 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -1.27 Total: 24.47 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 3.71 Total: -13.27 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -2.68 Total: -100.33 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -72.20 1.60 -70.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132400710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.689 kcal (2) G-P(sol) polarization free energy of solvation -72.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds