Wall clock time and date at job start Mon Mar 30 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.08995 * 109.46998 * 55.00790 * 3 2 1 5 5 C 1.50699 * 109.46880 * 174.99888 * 3 2 1 6 6 H 1.08004 * 120.00164 * 119.99942 * 5 3 2 7 7 C 1.37882 * 120.00379 * 299.73151 * 5 3 2 8 8 N 1.31509 * 119.99543 * 0.26835 * 7 5 3 9 9 Si 1.86798 * 120.00252 * 180.27513 * 7 5 3 10 10 H 1.48506 * 109.47166 * 59.99485 * 9 7 5 11 11 H 1.48496 * 109.47344 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46791 * 299.99688 * 9 7 5 13 13 N 1.46497 * 109.47404 * 295.00217 * 3 2 1 14 14 C 1.34776 * 120.00224 * 85.00033 * 13 3 2 15 15 O 1.21553 * 119.99375 * 0.02562 * 14 13 3 16 16 C 1.47853 * 120.00327 * 179.97438 * 14 13 3 17 17 C 1.39623 * 120.10925 * 353.80623 * 16 14 13 18 18 C 1.37983 * 120.00417 * 179.76552 * 17 16 14 19 19 C 1.38245 * 120.22780 * 0.51308 * 18 17 16 20 20 C 1.38982 * 120.22096 * 359.73675 * 19 18 17 21 21 N 1.39703 * 120.00532 * 180.02562 * 20 19 18 22 22 C 1.38679 * 119.99005 * 0.02562 * 20 19 18 23 23 C 1.50697 * 120.11334 * 180.02562 * 22 20 19 24 24 H 1.08991 * 109.46921 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47023 * 300.00171 * 1 2 3 26 26 H 1.09004 * 109.47034 * 59.99184 * 1 2 3 27 27 H 1.09001 * 109.47029 * 240.00771 * 2 1 3 28 28 H 1.08992 * 109.47200 * 120.00169 * 2 1 3 29 29 H 0.97002 * 119.99781 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99616 * 264.99826 * 13 3 2 31 31 H 1.08000 * 119.99413 * 0.02562 * 17 16 14 32 32 H 1.08003 * 119.88185 * 180.24957 * 18 17 16 33 33 H 1.07999 * 119.88785 * 179.72631 * 19 18 17 34 34 H 0.96996 * 120.00123 * 179.97438 * 21 20 19 35 35 H 0.97009 * 119.99911 * 359.97438 * 21 20 19 36 36 H 1.09006 * 109.47288 * 263.46324 * 23 22 20 37 37 H 1.09001 * 109.47289 * 23.45922 * 23 22 20 38 38 H 1.09002 * 109.47868 * 143.46322 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1431 0.8834 1.2307 8 7 3.4060 0.3420 2.1757 9 14 6.0044 0.8925 1.3878 10 1 6.4946 2.2943 1.3850 11 1 6.3971 0.2338 2.6594 12 1 6.6013 0.1571 0.2440 13 7 1.6524 2.0976 -1.2517 14 6 0.4351 2.6645 -1.3669 15 8 -0.3409 2.6327 -0.4319 16 6 0.0441 3.3261 -2.6300 17 6 0.9762 3.4792 -3.6582 18 6 0.6077 4.0927 -4.8379 19 6 -0.6804 4.5669 -5.0030 20 6 -1.6143 4.4241 -3.9837 21 7 -2.9149 4.9046 -4.1555 22 6 -1.2551 3.8047 -2.7961 23 6 -2.2658 3.6479 -1.6893 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8289 -0.0523 2.9545 30 1 2.2719 2.1233 -1.9977 31 1 1.9846 3.1137 -3.5316 32 1 1.3292 4.2065 -5.6335 33 1 -0.9617 5.0501 -5.9270 34 1 -3.5668 4.8046 -3.4443 35 1 -3.1660 5.3382 -4.9862 36 1 -2.1469 4.4592 -0.9711 37 1 -3.2715 3.6784 -2.1086 38 1 -2.1101 2.6928 -1.1876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134198778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:37 Heat of formation + Delta-G solvation = -17.786296 kcal Electronic energy + Delta-G solvation = -19839.151985 eV Core-core repulsion = 16874.018653 eV Total energy + Delta-G solvation = -2965.133332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98662 -38.22213 -35.08162 -34.58360 -32.36597 -32.03941 -30.95940 -28.82461 -27.00527 -26.44665 -23.61378 -22.69545 -21.06115 -20.29028 -19.26295 -17.78413 -17.04115 -16.16440 -15.50777 -15.27507 -15.05267 -14.66856 -14.27561 -13.82263 -13.49936 -13.27024 -12.89990 -12.64233 -12.15065 -12.05008 -11.80215 -11.50416 -11.45813 -11.21105 -10.96012 -10.92176 -10.79697 -10.52207 -10.29070 -10.11883 -9.58219 -9.02054 -8.77748 -8.57680 -8.45226 -7.73981 -7.43643 -6.09352 -4.18523 1.21831 1.68810 3.27863 3.33066 3.34315 3.50056 3.80344 4.18828 4.29026 4.42903 5.00565 5.05199 5.22020 5.25994 5.43735 5.60771 5.81958 5.83091 6.02467 6.10843 6.35727 6.43078 6.48873 6.52931 6.63250 6.69469 6.78941 6.95843 7.09952 7.24301 7.41060 7.47951 7.51148 7.65951 7.72266 7.78484 7.94480 8.21588 8.72482 8.81513 9.18843 9.48868 10.95996 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.005111 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.168710 B = 5476.698722 C = 6097.937321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.541 3.459 15 O -0.540 6.540 16 C -0.082 4.082 17 C -0.142 4.142 18 C -0.089 4.089 19 C -0.182 4.182 20 C 0.200 3.800 21 N -0.881 5.881 22 C -0.103 4.103 23 C -0.109 4.109 24 H 0.022 0.978 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.398 0.602 35 H 0.394 0.606 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 6.586 -12.991 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.420 6.420 16 C -0.086 4.086 17 C -0.163 4.163 18 C -0.107 4.107 19 C -0.205 4.205 20 C 0.097 3.903 21 N -0.422 5.422 22 C -0.109 4.109 23 C -0.165 4.165 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.228 0.772 35 H 0.222 0.778 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.935 6.417 -12.077 16.336 hybrid contribution 1.034 0.165 -0.461 1.144 sum -7.901 6.583 -12.538 16.216 Atomic orbital electron populations 1.21847 0.98377 0.98010 1.01248 1.21931 0.92634 0.99788 1.02240 1.18795 0.94177 0.89181 0.80968 0.93185 1.21202 0.90747 1.39164 1.06165 0.92166 1.24872 0.98539 0.94810 0.95374 1.69885 1.35186 1.37678 1.09228 0.86524 0.84944 0.78305 0.77418 1.20202 1.21163 1.20168 1.46463 1.14396 1.55468 1.18516 1.18172 0.82903 0.79310 0.86924 1.90669 1.50714 1.60532 1.40123 1.19930 0.93682 0.99812 0.95144 1.21130 0.99378 1.02242 0.93525 1.20743 0.95447 0.97429 0.97098 1.20618 0.93940 1.07287 0.98698 1.17489 0.85624 0.93897 0.93311 1.42505 1.09987 1.68452 1.21267 1.19476 0.95061 1.01330 0.95015 1.20871 0.94221 1.05578 0.95852 0.95925 0.93109 0.94219 0.95052 0.88317 0.92545 0.77872 0.85760 0.85936 0.86415 0.77203 0.77785 0.91359 0.93993 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.90 4.97 -55.88 -0.28 -15.18 16 14 C 0.54 11.14 6.27 -12.33 -0.08 11.06 16 15 O -0.54 -12.33 10.47 5.32 0.06 -12.28 16 16 C -0.08 -1.40 5.87 -104.99 -0.62 -2.02 16 17 C -0.14 -2.07 9.52 -39.16 -0.37 -2.45 16 18 C -0.09 -1.08 10.02 -39.67 -0.40 -1.48 16 19 C -0.18 -2.15 9.89 -39.30 -0.39 -2.54 16 20 C 0.20 2.58 6.73 -83.83 -0.56 2.01 16 21 N -0.88 -8.26 8.99 32.39 0.29 -7.97 16 22 C -0.10 -1.61 5.93 -104.01 -0.62 -2.23 16 23 C -0.11 -1.64 8.44 36.00 0.30 -1.34 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 7.30 6.61 -40.82 -0.27 7.03 16 31 H 0.12 1.67 6.45 -52.49 -0.34 1.33 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.40 3.41 6.69 -40.82 -0.27 3.13 16 35 H 0.39 2.70 8.84 -40.82 -0.36 2.33 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.50 6.23 -51.93 -0.32 0.17 16 38 H 0.10 1.79 5.84 -51.93 -0.30 1.48 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -29.97 303.76 -7.78 -37.76 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.93 Total: 12.63 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.11 Total: -11.06 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.64 Total: -47.24 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.06 Total: -12.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.97 -7.78 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134198778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.969 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds