Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47395 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00017 * 2 1 3 5 5 N 1.46897 * 109.47304 * 60.00034 * 4 2 1 6 6 C 1.50705 * 109.47087 * 120.00296 * 2 1 3 7 7 O 1.21278 * 120.00072 * 119.99881 * 6 2 1 8 8 N 1.34770 * 119.99743 * 299.99813 * 6 2 1 9 9 C 1.39239 * 119.99959 * 184.29333 * 8 6 2 10 10 C 1.39478 * 119.83238 * 324.70825 * 9 8 6 11 11 C 1.36370 * 120.16952 * 180.30006 * 10 9 8 12 12 C 1.40874 * 119.82617 * 359.47617 * 11 10 9 13 13 C 1.41158 * 120.15960 * 180.25165 * 12 11 10 14 14 H 1.08009 * 119.99522 * 215.01433 * 13 12 11 15 15 C 1.39900 * 120.00488 * 35.02062 * 13 12 11 16 16 N 1.30870 * 119.99788 * 355.54235 * 15 13 12 17 17 Si 1.86801 * 120.00301 * 175.54079 * 15 13 12 18 18 H 1.48501 * 109.47101 * 89.99930 * 17 15 13 19 19 H 1.48502 * 109.47060 * 210.00161 * 17 15 13 20 20 H 1.48503 * 109.46930 * 329.99985 * 17 15 13 21 21 C 1.40864 * 119.67253 * 0.52485 * 12 11 10 22 22 C 1.36374 * 119.82668 * 359.72773 * 21 12 11 23 23 H 1.09001 * 109.47027 * 299.99949 * 1 2 3 24 24 H 1.08998 * 109.47064 * 59.99791 * 1 2 3 25 25 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47267 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47184 * 300.00135 * 3 2 1 28 28 H 1.09000 * 109.47457 * 60.00286 * 3 2 1 29 29 H 1.08999 * 109.47395 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.46954 * 300.00462 * 4 2 1 31 31 H 1.00898 * 111.00258 * 180.02562 * 5 4 2 32 32 H 1.00904 * 110.99849 * 303.95633 * 5 4 2 33 33 H 0.96999 * 120.00349 * 4.28675 * 8 6 2 34 34 H 1.07999 * 119.91803 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.08608 * 179.70227 * 11 10 9 36 36 H 0.97002 * 120.00233 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.08494 * 179.70872 * 21 12 11 38 38 H 1.07999 * 119.91307 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5503 -0.0288 -2.4487 6 6 2.0323 -0.7105 1.2305 7 8 2.7295 -1.6966 1.1192 8 7 1.7067 -0.2501 2.4545 9 6 2.2428 -0.8518 3.5900 10 6 2.4631 -2.2290 3.6069 11 6 2.9821 -2.8264 4.7175 12 6 3.3061 -2.0472 5.8456 13 6 3.8486 -2.6575 6.9970 14 1 3.5938 -2.2831 7.9775 15 6 4.7163 -3.7473 6.8682 16 7 4.9567 -4.2562 5.6867 17 14 5.5319 -4.4761 8.3825 18 1 4.6689 -5.5471 8.9424 19 1 6.8503 -5.0478 8.0080 20 1 5.7247 -3.4127 9.4010 21 6 3.0806 -0.6570 5.8209 22 6 2.5561 -0.0746 4.7049 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2491 30 1 1.6765 -1.7489 -1.2493 31 1 1.8735 -0.4865 -3.2878 32 1 0.5438 0.0413 -2.4401 33 1 1.0991 0.5006 2.5445 34 1 2.2180 -2.8244 2.7399 35 1 3.1477 -3.8935 4.7309 36 1 5.5586 -5.0116 5.5972 37 1 3.3221 -0.0539 6.6838 38 1 2.3831 0.9913 4.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137409313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -24.902159 kcal Electronic energy + Delta-G solvation = -19501.421733 eV Core-core repulsion = 16535.979834 eV Total energy + Delta-G solvation = -2965.441899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13469 -37.65221 -36.16438 -34.44824 -33.01636 -31.87598 -29.49083 -28.81310 -27.40689 -25.48150 -25.02999 -22.38254 -21.23243 -20.29578 -18.69088 -17.31090 -17.24472 -16.15999 -15.78669 -15.24151 -14.83503 -14.44137 -13.95987 -13.88936 -13.54839 -13.35464 -12.83394 -12.67661 -12.24074 -12.19226 -11.96845 -11.79296 -11.69251 -11.43307 -11.19149 -11.09599 -10.89656 -10.83514 -10.47272 -9.89482 -9.84886 -9.36599 -8.95143 -8.80269 -8.68401 -7.50763 -6.86387 -6.57570 -4.31452 2.60299 3.02349 3.10797 3.11736 3.15979 3.36732 3.69457 4.00350 4.52791 4.67655 4.73136 4.85397 4.90554 5.25554 5.50324 5.58634 5.68279 5.69834 5.75692 5.84525 5.96211 6.15051 6.17782 6.25898 6.40575 6.82305 6.95141 7.02125 7.06499 7.21974 7.26789 7.32180 7.65427 7.70045 8.00150 8.11132 8.22594 8.36134 8.68896 8.80263 8.95328 9.03769 10.33521 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041900 B = 0.004224 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.104334 B = 6627.037048 C = 7023.290379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.129 4.129 4 C 0.085 3.915 5 N -0.849 5.849 6 C 0.508 3.492 7 O -0.529 6.529 8 N -0.650 5.650 9 C 0.006 3.994 10 C -0.094 4.094 11 C -0.144 4.144 12 C 0.100 3.900 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.808 5.808 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.204 4.204 22 C -0.114 4.114 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.342 0.658 32 H 0.337 0.663 33 H 0.393 0.607 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.278 0.722 37 H 0.096 0.904 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 7.293 -10.230 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.046 4.046 5 N -0.380 5.380 6 C 0.294 3.706 7 O -0.405 6.405 8 N -0.293 5.293 9 C -0.087 4.087 10 C -0.114 4.114 11 C -0.164 4.164 12 C 0.097 3.903 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.435 5.435 17 Si 0.740 3.260 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.224 4.224 22 C -0.134 4.134 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.227 0.773 34 H 0.124 0.876 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.522 7.021 -10.166 13.971 hybrid contribution -0.232 -0.831 0.486 0.991 sum -6.754 6.189 -9.680 13.327 Atomic orbital electron populations 1.21882 0.93108 1.02428 1.02692 1.20753 0.96789 0.97375 0.93426 1.21720 1.01564 0.93084 1.02298 1.21524 1.00816 0.94351 0.87922 1.58774 1.16148 1.58625 1.04411 1.20411 0.80781 0.85030 0.84417 1.90701 1.37773 1.25656 1.86377 1.42969 1.46661 1.34842 1.04788 1.17309 1.11705 0.92303 0.87340 1.20632 1.00402 0.92266 0.98081 1.21305 1.00908 1.00775 0.93439 1.17720 0.88626 0.90451 0.93458 1.19478 1.24189 1.11843 0.93975 0.90666 1.25886 0.96194 0.95440 0.97082 1.69790 1.29974 1.20213 1.23551 0.86210 0.78718 0.79515 0.81582 1.19542 1.20308 1.18764 1.20688 1.09050 0.95007 0.97608 1.20077 1.02424 0.96649 0.94278 0.91865 0.91317 0.92279 0.92345 0.90555 0.92817 0.90154 0.94634 0.84579 0.85012 0.77279 0.87570 0.85246 0.91101 0.88549 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.04 37.16 0.30 -1.13 16 2 C -0.08 -1.01 0.69 -155.66 -0.11 -1.12 16 3 C -0.13 -1.47 8.22 37.15 0.31 -1.17 16 4 C 0.08 1.06 5.04 -3.82 -0.02 1.04 16 5 N -0.85 -7.87 8.84 -10.37 -0.09 -7.96 16 6 C 0.51 9.05 6.31 -10.99 -0.07 8.98 16 7 O -0.53 -11.83 13.40 5.56 0.07 -11.76 16 8 N -0.65 -11.54 5.08 -9.74 -0.05 -11.59 16 9 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 10 C -0.09 -2.37 8.61 -39.79 -0.34 -2.72 16 11 C -0.14 -3.93 8.61 -39.26 -0.34 -4.26 16 12 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 13 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 14 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 15 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 16 N -0.81 -21.84 10.61 55.55 0.59 -21.25 16 17 Si 0.91 19.30 29.56 -169.99 -5.03 14.28 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.20 -4.97 9.74 -39.26 -0.38 -5.36 16 22 C -0.11 -2.52 9.90 -39.79 -0.39 -2.92 16 23 H 0.06 0.58 7.47 -51.93 -0.39 0.19 16 24 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 28 H 0.05 0.55 7.67 -51.93 -0.40 0.16 16 29 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.34 2.67 9.08 -39.29 -0.36 2.31 16 32 H 0.34 2.61 7.03 -39.29 -0.28 2.33 16 33 H 0.39 5.53 7.67 -40.82 -0.31 5.22 16 34 H 0.11 2.70 6.22 -52.49 -0.33 2.38 16 35 H 0.13 3.68 6.15 -52.49 -0.32 3.36 16 36 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 37 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -30.75 310.48 -7.62 -38.38 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.20 Total: 13.32 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.60 Total: -18.09 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.45 Total: -40.81 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.75 -7.62 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137409313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.474 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds