Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47395 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00017 * 2 1 3 5 5 N 1.46897 * 109.47304 * 60.00034 * 4 2 1 6 6 C 1.50705 * 109.47087 * 120.00296 * 2 1 3 7 7 O 1.21278 * 120.00072 * 119.99881 * 6 2 1 8 8 N 1.34770 * 119.99743 * 299.99813 * 6 2 1 9 9 C 1.39239 * 119.99959 * 184.29333 * 8 6 2 10 10 C 1.39478 * 119.83238 * 324.70825 * 9 8 6 11 11 C 1.36370 * 120.16952 * 180.30006 * 10 9 8 12 12 C 1.40874 * 119.82617 * 359.47617 * 11 10 9 13 13 C 1.41158 * 120.15960 * 180.25165 * 12 11 10 14 14 H 1.08009 * 119.99522 * 215.01433 * 13 12 11 15 15 C 1.39900 * 120.00488 * 35.02062 * 13 12 11 16 16 N 1.30870 * 119.99788 * 355.54235 * 15 13 12 17 17 Si 1.86801 * 120.00301 * 175.54079 * 15 13 12 18 18 H 1.48501 * 109.47101 * 89.99930 * 17 15 13 19 19 H 1.48502 * 109.47060 * 210.00161 * 17 15 13 20 20 H 1.48503 * 109.46930 * 329.99985 * 17 15 13 21 21 C 1.40864 * 119.67253 * 0.52485 * 12 11 10 22 22 C 1.36374 * 119.82668 * 359.72773 * 21 12 11 23 23 H 1.09001 * 109.47027 * 299.99949 * 1 2 3 24 24 H 1.08998 * 109.47064 * 59.99791 * 1 2 3 25 25 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47267 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47184 * 300.00135 * 3 2 1 28 28 H 1.09000 * 109.47457 * 60.00286 * 3 2 1 29 29 H 1.08999 * 109.47395 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.46954 * 300.00462 * 4 2 1 31 31 H 1.00898 * 111.00258 * 180.02562 * 5 4 2 32 32 H 1.00904 * 110.99849 * 303.95633 * 5 4 2 33 33 H 0.96999 * 120.00349 * 4.28675 * 8 6 2 34 34 H 1.07999 * 119.91803 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.08608 * 179.70227 * 11 10 9 36 36 H 0.97002 * 120.00233 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.08494 * 179.70872 * 21 12 11 38 38 H 1.07999 * 119.91307 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5503 -0.0288 -2.4487 6 6 2.0323 -0.7105 1.2305 7 8 2.7295 -1.6966 1.1192 8 7 1.7067 -0.2501 2.4545 9 6 2.2428 -0.8518 3.5900 10 6 2.4631 -2.2290 3.6069 11 6 2.9821 -2.8264 4.7175 12 6 3.3061 -2.0472 5.8456 13 6 3.8486 -2.6575 6.9970 14 1 3.5938 -2.2831 7.9775 15 6 4.7163 -3.7473 6.8682 16 7 4.9567 -4.2562 5.6867 17 14 5.5319 -4.4761 8.3825 18 1 4.6689 -5.5471 8.9424 19 1 6.8503 -5.0478 8.0080 20 1 5.7247 -3.4127 9.4010 21 6 3.0806 -0.6570 5.8209 22 6 2.5561 -0.0746 4.7049 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2491 30 1 1.6765 -1.7489 -1.2493 31 1 1.8735 -0.4865 -3.2878 32 1 0.5438 0.0413 -2.4401 33 1 1.0991 0.5006 2.5445 34 1 2.2180 -2.8244 2.7399 35 1 3.1477 -3.8935 4.7309 36 1 5.5586 -5.0116 5.5972 37 1 3.3221 -0.0539 6.6838 38 1 2.3831 0.9913 4.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137409313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -46.289879 kcal Electronic energy + Delta-G solvation = -19502.349175 eV Core-core repulsion = 16535.979834 eV Total energy + Delta-G solvation = -2966.369340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59729 -39.37085 -37.43909 -36.20383 -34.75943 -32.93507 -31.43523 -30.65967 -28.25166 -26.97647 -26.35731 -23.94044 -23.11632 -21.98681 -20.07759 -19.23464 -18.57082 -17.68564 -17.14918 -16.75542 -16.23209 -15.76236 -15.67514 -15.17376 -14.79735 -14.63384 -14.36495 -14.11938 -13.98781 -13.64154 -13.31848 -13.13606 -13.00646 -12.85926 -12.77865 -12.67050 -12.31289 -12.04365 -11.80724 -11.76763 -11.68961 -11.16458 -10.69704 -10.39941 -9.64315 -9.46671 -8.75486 -8.50403 -6.33892 0.80011 1.11726 1.38178 1.43887 1.53326 1.78998 2.22658 2.29936 2.81127 3.59404 3.61064 3.68476 3.84460 3.98013 4.20825 4.42617 4.47303 4.61896 4.68877 4.77676 4.90704 4.95519 4.98702 5.05811 5.11786 5.16099 5.29254 5.33335 5.37800 5.42557 5.70028 5.86073 6.07234 6.13710 6.15062 6.34499 6.59990 6.69089 6.71963 6.95323 7.01289 7.39535 8.42722 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041900 B = 0.004224 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.104334 B = 6627.037048 C = 7023.290379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.125 4.125 4 C 0.090 3.910 5 N -0.838 5.838 6 C 0.503 3.497 7 O -0.580 6.580 8 N -0.640 5.640 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.169 4.169 12 C 0.066 3.934 13 C -0.498 4.498 14 H 0.080 0.920 15 C 0.022 3.978 16 N -0.848 5.848 17 Si 0.991 3.009 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.255 1.255 21 C -0.209 4.209 22 C -0.108 4.108 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.352 0.648 32 H 0.350 0.650 33 H 0.417 0.583 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.282 0.718 37 H 0.113 0.887 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 9.848 -10.586 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.042 4.042 5 N -0.371 5.371 6 C 0.291 3.709 7 O -0.459 6.459 8 N -0.284 5.284 9 C -0.074 4.074 10 C -0.129 4.129 11 C -0.189 4.189 12 C 0.064 3.936 13 C -0.528 4.528 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.477 5.477 17 Si 0.812 3.188 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.178 1.178 21 C -0.228 4.228 22 C -0.127 4.127 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.255 0.745 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.736 9.625 -10.548 16.241 hybrid contribution 0.054 -1.542 0.432 1.602 sum -7.682 8.083 -10.117 15.057 Atomic orbital electron populations 1.21923 0.90354 1.02601 1.04953 1.20738 0.98761 0.97435 0.90292 1.21734 1.00418 0.91930 1.04152 1.21336 0.99389 0.93979 0.89482 1.58709 1.17124 1.57773 1.03501 1.21469 0.79494 0.84276 0.85641 1.90691 1.39978 1.28123 1.87133 1.42881 1.46825 1.35162 1.03563 1.17394 1.09774 0.91325 0.88924 1.20644 1.01197 0.93986 0.97117 1.21171 1.02960 0.99899 0.94876 1.18056 0.89818 0.92030 0.93723 1.19781 1.25510 1.13333 0.94210 0.90159 1.26856 0.96340 0.95397 1.00291 1.69916 1.30894 1.20948 1.25897 0.85067 0.77586 0.78778 0.77389 1.18648 1.19797 1.17834 1.20968 1.08678 0.94103 0.99099 1.20450 1.00635 0.98803 0.92856 0.90439 0.88285 0.93208 0.94215 0.88520 0.91144 0.92655 0.96291 0.83427 0.83545 0.74544 0.88751 0.87861 0.90784 0.86851 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.04 71.98 0.58 -1.75 16 2 C -0.07 -1.60 0.69 -52.93 -0.04 -1.64 16 3 C -0.12 -2.45 8.22 71.98 0.59 -1.85 16 4 C 0.09 2.18 5.04 86.30 0.43 2.61 16 5 N -0.84 -13.45 8.84 -186.72 -1.65 -15.10 16 6 C 0.50 17.57 6.31 87.66 0.55 18.13 16 7 O -0.58 -26.74 13.40 -3.02 -0.04 -26.78 16 8 N -0.64 -21.50 5.08 -303.12 -1.54 -23.04 16 9 C 0.02 0.86 6.31 38.56 0.24 1.10 16 10 C -0.11 -5.73 8.61 22.13 0.19 -5.54 16 11 C -0.17 -9.69 8.61 22.48 0.19 -9.49 16 12 C 0.07 3.69 5.55 -21.27 -0.12 3.57 16 13 C -0.50 -27.64 9.02 23.39 0.21 -27.43 16 14 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 15 C 0.02 1.19 5.42 85.24 0.46 1.65 16 16 N -0.85 -48.05 10.61 21.82 0.23 -47.82 16 17 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 21 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 22 C -0.11 -4.52 9.90 22.13 0.22 -4.30 16 23 H 0.08 1.09 7.47 -2.39 -0.02 1.07 16 24 H 0.10 1.08 6.57 -2.39 -0.02 1.07 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.10 1.55 7.60 -2.39 -0.02 1.53 16 28 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 29 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 30 H 0.02 0.51 8.10 -2.39 -0.02 0.49 16 31 H 0.35 4.75 9.08 -89.70 -0.81 3.93 16 32 H 0.35 4.18 7.03 -89.69 -0.63 3.55 16 33 H 0.42 10.17 7.67 -92.71 -0.71 9.46 16 34 H 0.09 5.09 6.22 -2.91 -0.02 5.07 16 35 H 0.10 6.35 6.15 -2.91 -0.02 6.33 16 36 H 0.28 14.64 8.30 -92.71 -0.77 13.87 16 37 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 38 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -71.16 310.48 1.71 -69.45 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -1.06 Total: 35.85 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 3.74 Total: -34.80 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.96 Total: -85.97 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -71.16 1.71 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137409313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.162 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds