Wall clock time and date at job start Mon Mar 30 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36343 * 125.63587 * 2 1 4 4 C 1.34844 * 108.21793 * 179.97438 * 3 2 1 5 5 C 1.40897 * 107.41948 * 359.77668 * 4 3 2 6 6 C 1.34843 * 107.41206 * 0.37476 * 5 4 3 7 7 C 1.50700 * 125.89242 * 179.88860 * 6 5 4 8 8 H 1.09000 * 109.59147 * 172.90154 * 7 6 5 9 9 C 1.53194 * 109.70262 * 52.54242 * 7 6 5 10 10 C 1.53035 * 109.31563 * 185.50999 * 9 7 6 11 11 C 1.53042 * 109.53530 * 61.36869 * 10 9 7 12 12 C 1.53192 * 109.31403 * 298.63434 * 11 10 9 13 13 N 1.46923 * 108.77246 * 54.63609 * 12 11 10 14 14 C 1.34781 * 120.63084 * 126.37523 * 13 12 11 15 15 O 1.21690 * 119.99942 * 182.59780 * 14 13 12 16 16 C 1.46369 * 119.99730 * 2.58667 * 14 13 12 17 17 H 1.08000 * 120.00664 * 9.26974 * 16 14 13 18 18 C 1.40052 * 120.00091 * 189.26998 * 16 14 13 19 19 N 1.30680 * 119.99769 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00416 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46791 * 89.99780 * 20 18 16 22 22 H 1.48502 * 109.47260 * 210.00032 * 20 18 16 23 23 H 1.48501 * 109.46732 * 330.00154 * 20 18 16 24 24 H 1.09003 * 109.47288 * 270.01882 * 1 2 3 25 25 H 1.09006 * 109.47080 * 30.01687 * 1 2 3 26 26 H 1.08995 * 109.47452 * 150.01673 * 1 2 3 27 27 H 1.08000 * 125.89017 * 359.95526 * 3 2 1 28 28 H 1.07998 * 126.29469 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.29235 * 180.23660 * 5 4 3 30 30 H 1.09000 * 109.49983 * 305.46456 * 9 7 6 31 31 H 1.09002 * 109.49444 * 65.56233 * 9 7 6 32 32 H 1.09007 * 109.46297 * 301.34948 * 10 9 7 33 33 H 1.09002 * 109.45617 * 181.38310 * 10 9 7 34 34 H 1.09002 * 109.49707 * 178.68506 * 11 10 9 35 35 H 1.08997 * 109.52741 * 58.60501 * 11 10 9 36 36 H 1.08998 * 109.58762 * 294.84762 * 12 11 10 37 37 H 1.08997 * 109.58910 * 174.42485 * 12 11 10 38 38 H 0.96996 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5459 0.7045 0.0006 5 6 3.5460 -0.7045 0.0062 6 6 2.2594 -1.1081 0.0004 7 6 1.7817 -2.5374 0.0010 8 1 0.6988 -2.5608 0.1223 9 6 2.4441 -3.3028 1.1509 10 6 2.0612 -4.7818 1.0613 11 6 2.5684 -5.3625 -0.2607 12 6 1.9075 -4.6205 -1.4267 13 7 2.1492 -3.1800 -1.2682 14 6 2.6979 -2.4616 -2.2680 15 8 2.9366 -1.2792 -2.1076 16 6 3.0067 -3.1039 -3.5465 17 1 2.6616 -4.1081 -3.7437 18 6 3.7497 -2.4162 -4.5142 19 7 4.1677 -1.2013 -4.2754 20 14 4.1433 -3.2355 -6.1461 21 1 3.0640 -2.9386 -7.1220 22 1 5.4347 -2.7150 -6.6626 23 1 4.2440 -4.7042 -5.9510 24 1 -0.3634 0.0003 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.9171 2.1325 -0.0007 28 1 4.4165 1.3436 0.0011 29 1 4.4165 -1.3437 0.0116 30 1 3.5270 -3.2023 1.0788 31 1 2.1030 -2.8958 2.1028 32 1 0.9766 -4.8797 1.1086 33 1 2.5114 -5.3243 1.8927 34 1 2.3158 -6.4215 -0.3135 35 1 3.6502 -5.2431 -0.3199 36 1 0.8348 -4.8138 -1.4218 37 1 2.3381 -4.9619 -2.3680 38 1 4.6827 -0.7251 -4.9454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153935420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:32 Heat of formation + Delta-G solvation = 36.915857 kcal Electronic energy + Delta-G solvation = -20998.933600 eV Core-core repulsion = 18036.172331 eV Total energy + Delta-G solvation = -2962.761269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43229 -38.18643 -35.60683 -32.56891 -32.00841 -31.52031 -31.22254 -27.16722 -26.15604 -25.55798 -23.92080 -22.57061 -20.50337 -19.86107 -18.92782 -17.88537 -16.65033 -15.89254 -15.36718 -14.63915 -14.41432 -14.13479 -13.86136 -13.71966 -13.37960 -12.82938 -12.57501 -12.38491 -12.28643 -11.76634 -11.58129 -11.35529 -11.25317 -11.08513 -11.01928 -10.91292 -10.52732 -10.49810 -10.33397 -10.17118 -10.13079 -9.67093 -8.77805 -8.00863 -7.45799 -7.04193 -6.36305 -5.70167 -4.52246 3.16332 3.22478 3.25156 3.27327 3.86670 4.11927 4.21560 4.65454 4.77723 5.21185 5.28223 5.31756 5.35047 5.58174 5.64920 5.70599 5.82786 5.87834 5.91838 5.99823 6.06644 6.15526 6.31437 6.31976 6.44875 6.55565 6.61440 6.63530 6.76122 6.85538 7.37388 7.46331 7.52575 7.67249 8.15229 8.24278 8.33713 8.44082 8.44616 9.11984 9.55190 10.69658 10.91248 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.009397 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.506066 B = 2979.032801 C = 4089.631158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.445 5.445 3 C -0.046 4.046 4 C -0.185 4.185 5 C -0.136 4.136 6 C 0.067 3.933 7 C 0.222 3.778 8 H 0.045 0.955 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.136 4.136 12 C 0.123 3.877 13 N -0.637 5.637 14 C 0.550 3.450 15 O -0.528 6.528 16 C -0.548 4.548 17 H 0.067 0.933 18 C 0.090 3.910 19 N -0.765 5.765 20 Si 0.900 3.100 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -3.561 8.690 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.124 5.124 3 C -0.173 4.173 4 C -0.210 4.210 5 C -0.160 4.160 6 C -0.044 4.044 7 C 0.117 3.883 8 H 0.063 0.937 9 C -0.159 4.159 10 C -0.151 4.151 11 C -0.175 4.175 12 C -0.002 4.002 13 N -0.378 5.378 14 C 0.354 3.646 15 O -0.407 6.407 16 C -0.585 4.585 17 H 0.085 0.915 18 C -0.129 4.129 19 N -0.394 5.394 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.160 0.840 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.690 -2.700 8.677 10.722 hybrid contribution 0.157 -0.485 -1.129 1.238 sum -5.533 -3.185 7.549 9.886 Atomic orbital electron populations 1.21735 0.79535 1.03479 1.01334 1.43402 1.04573 1.05884 1.58572 1.21154 0.90625 0.90048 1.15517 1.20468 0.94966 0.95201 1.10387 1.19901 0.94369 0.94027 1.07720 1.19431 0.90531 0.86714 1.07710 1.18994 0.95842 0.87415 0.86054 0.93746 1.21887 1.01795 0.94766 0.97411 1.21479 1.00338 0.95813 0.97519 1.21960 1.01378 0.98644 0.95474 1.21409 0.97736 0.82237 0.98776 1.48372 1.68582 1.07473 1.13324 1.18279 0.76771 0.86630 0.82901 1.90874 1.54365 1.15146 1.80303 1.20989 1.36951 1.01620 0.98896 0.91488 1.25647 0.94220 0.94232 0.98818 1.70015 1.26656 1.09689 1.33005 0.86508 0.78127 0.80186 0.82714 1.19981 1.20606 1.19055 0.92349 0.90901 0.90834 0.84046 0.86583 0.87075 0.91170 0.92153 0.92575 0.92532 0.92150 0.91634 0.94448 0.88818 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.74 59.84 0.64 1.91 16 2 N -0.45 -9.03 3.15 -119.91 -0.38 -9.41 16 3 C -0.05 -0.93 11.43 -16.75 -0.19 -1.13 16 4 C -0.18 -4.13 10.78 -39.78 -0.43 -4.56 16 5 C -0.14 -3.23 7.41 -39.78 -0.29 -3.52 16 6 C 0.07 1.48 3.72 -81.79 -0.30 1.18 16 7 C 0.22 4.40 3.17 -68.75 -0.22 4.18 16 8 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16 9 C -0.12 -1.97 5.25 -26.61 -0.14 -2.11 16 10 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 11 C -0.14 -2.08 6.08 -26.61 -0.16 -2.24 16 12 C 0.12 2.27 6.32 -3.71 -0.02 2.25 16 13 N -0.64 -14.27 2.97 -168.19 -0.50 -14.77 16 14 C 0.55 15.20 7.44 -12.99 -0.10 15.10 16 15 O -0.53 -15.95 9.97 5.20 0.05 -15.90 16 16 C -0.55 -15.23 8.75 -35.63 -0.31 -15.54 16 17 H 0.07 1.72 5.85 -52.49 -0.31 1.42 16 18 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 19 N -0.76 -22.83 11.87 55.55 0.66 -22.17 16 20 Si 0.90 20.31 29.56 -169.99 -5.02 15.28 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.16 7.14 -51.93 -0.37 0.79 16 27 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 28 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 29 H 0.11 2.75 7.87 -52.49 -0.41 2.34 16 30 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.85 5.41 -51.93 -0.28 1.57 16 38 H 0.27 7.32 8.29 -40.82 -0.34 6.99 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -33.75 301.52 -7.91 -41.66 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.48 Total: 4.58 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.78 Total: -3.82 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.22 Total: -46.35 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.05 Total: -15.90 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.75 -7.91 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153935420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.576 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds