Wall clock time and date at job start Mon Mar 30 2020 05:01:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36343 * 125.63587 * 2 1
4 4 C 1.34844 * 108.21793 * 179.97438 * 3 2 1
5 5 C 1.40897 * 107.41948 * 359.77668 * 4 3 2
6 6 C 1.34843 * 107.41206 * 0.37476 * 5 4 3
7 7 C 1.50700 * 125.89242 * 179.88860 * 6 5 4
8 8 H 1.09000 * 109.59147 * 172.90154 * 7 6 5
9 9 C 1.53194 * 109.70262 * 52.54242 * 7 6 5
10 10 C 1.53035 * 109.31563 * 185.50999 * 9 7 6
11 11 C 1.53042 * 109.53530 * 61.36869 * 10 9 7
12 12 C 1.53192 * 109.31403 * 298.63434 * 11 10 9
13 13 N 1.46923 * 108.77246 * 54.63609 * 12 11 10
14 14 C 1.34781 * 120.63084 * 126.37523 * 13 12 11
15 15 O 1.21690 * 119.99942 * 182.59780 * 14 13 12
16 16 C 1.46369 * 119.99730 * 2.58667 * 14 13 12
17 17 H 1.08000 * 120.00664 * 9.26974 * 16 14 13
18 18 C 1.40052 * 120.00091 * 189.26998 * 16 14 13
19 19 N 1.30680 * 119.99769 * 0.02562 * 18 16 14
20 20 Si 1.86800 * 120.00416 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.46791 * 89.99780 * 20 18 16
22 22 H 1.48502 * 109.47260 * 210.00032 * 20 18 16
23 23 H 1.48501 * 109.46732 * 330.00154 * 20 18 16
24 24 H 1.09003 * 109.47288 * 270.01882 * 1 2 3
25 25 H 1.09006 * 109.47080 * 30.01687 * 1 2 3
26 26 H 1.08995 * 109.47452 * 150.01673 * 1 2 3
27 27 H 1.08000 * 125.89017 * 359.95526 * 3 2 1
28 28 H 1.07998 * 126.29469 * 180.02562 * 4 3 2
29 29 H 1.07997 * 126.29235 * 180.23660 * 5 4 3
30 30 H 1.09000 * 109.49983 * 305.46456 * 9 7 6
31 31 H 1.09002 * 109.49444 * 65.56233 * 9 7 6
32 32 H 1.09007 * 109.46297 * 301.34948 * 10 9 7
33 33 H 1.09002 * 109.45617 * 181.38310 * 10 9 7
34 34 H 1.09002 * 109.49707 * 178.68506 * 11 10 9
35 35 H 1.08997 * 109.52741 * 58.60501 * 11 10 9
36 36 H 1.08998 * 109.58762 * 294.84762 * 12 11 10
37 37 H 1.08997 * 109.58910 * 174.42485 * 12 11 10
38 38 H 0.96996 * 120.00249 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2593 1.1081 0.0000
4 6 3.5459 0.7045 0.0006
5 6 3.5460 -0.7045 0.0062
6 6 2.2594 -1.1081 0.0004
7 6 1.7817 -2.5374 0.0010
8 1 0.6988 -2.5608 0.1223
9 6 2.4441 -3.3028 1.1509
10 6 2.0612 -4.7818 1.0613
11 6 2.5684 -5.3625 -0.2607
12 6 1.9075 -4.6205 -1.4267
13 7 2.1492 -3.1800 -1.2682
14 6 2.6979 -2.4616 -2.2680
15 8 2.9366 -1.2792 -2.1076
16 6 3.0067 -3.1039 -3.5465
17 1 2.6616 -4.1081 -3.7437
18 6 3.7497 -2.4162 -4.5142
19 7 4.1677 -1.2013 -4.2754
20 14 4.1433 -3.2355 -6.1461
21 1 3.0640 -2.9386 -7.1220
22 1 5.4347 -2.7150 -6.6626
23 1 4.2440 -4.7042 -5.9510
24 1 -0.3634 0.0003 1.0277
25 1 -0.3633 0.8899 -0.5141
26 1 -0.3634 -0.8901 -0.5135
27 1 1.9171 2.1325 -0.0007
28 1 4.4165 1.3436 0.0011
29 1 4.4165 -1.3437 0.0116
30 1 3.5270 -3.2023 1.0788
31 1 2.1030 -2.8958 2.1028
32 1 0.9766 -4.8797 1.1086
33 1 2.5114 -5.3243 1.8927
34 1 2.3158 -6.4215 -0.3135
35 1 3.6502 -5.2431 -0.3199
36 1 0.8348 -4.8138 -1.4218
37 1 2.3381 -4.9619 -2.3680
38 1 4.6827 -0.7251 -4.9454
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000153935420.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:32
Heat of formation + Delta-G solvation = 36.915857 kcal
Electronic energy + Delta-G solvation = -20998.933600 eV
Core-core repulsion = 18036.172331 eV
Total energy + Delta-G solvation = -2962.761269 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.43229 -38.18643 -35.60683 -32.56891 -32.00841 -31.52031 -31.22254 -27.16722
-26.15604 -25.55798 -23.92080 -22.57061 -20.50337 -19.86107 -18.92782 -17.88537
-16.65033 -15.89254 -15.36718 -14.63915 -14.41432 -14.13479 -13.86136 -13.71966
-13.37960 -12.82938 -12.57501 -12.38491 -12.28643 -11.76634 -11.58129 -11.35529
-11.25317 -11.08513 -11.01928 -10.91292 -10.52732 -10.49810 -10.33397 -10.17118
-10.13079 -9.67093 -8.77805 -8.00863 -7.45799 -7.04193 -6.36305 -5.70167
-4.52246 3.16332 3.22478 3.25156 3.27327 3.86670 4.11927 4.21560
4.65454 4.77723 5.21185 5.28223 5.31756 5.35047 5.58174 5.64920
5.70599 5.82786 5.87834 5.91838 5.99823 6.06644 6.15526 6.31437
6.31976 6.44875 6.55565 6.61440 6.63530 6.76122 6.85538 7.37388
7.46331 7.52575 7.67249 8.15229 8.24278 8.33713 8.44082 8.44616
9.11984 9.55190 10.69658 10.91248
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.016981 B = 0.009397 C = 0.006845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1648.506066 B = 2979.032801 C = 4089.631158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.445 5.445
3 C -0.046 4.046
4 C -0.185 4.185
5 C -0.136 4.136
6 C 0.067 3.933
7 C 0.222 3.778
8 H 0.045 0.955
9 C -0.120 4.120
10 C -0.114 4.114
11 C -0.136 4.136
12 C 0.123 3.877
13 N -0.637 5.637
14 C 0.550 3.450
15 O -0.528 6.528
16 C -0.548 4.548
17 H 0.067 0.933
18 C 0.090 3.910
19 N -0.765 5.765
20 Si 0.900 3.100
21 H -0.274 1.274
22 H -0.281 1.281
23 H -0.266 1.266
24 H 0.058 0.942
25 H 0.072 0.928
26 H 0.073 0.927
27 H 0.142 0.858
28 H 0.116 0.884
29 H 0.111 0.889
30 H 0.070 0.930
31 H 0.060 0.940
32 H 0.055 0.945
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.065 0.935
36 H 0.037 0.963
37 H 0.094 0.906
38 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.569 -3.561 8.690 10.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.124 5.124
3 C -0.173 4.173
4 C -0.210 4.210
5 C -0.160 4.160
6 C -0.044 4.044
7 C 0.117 3.883
8 H 0.063 0.937
9 C -0.159 4.159
10 C -0.151 4.151
11 C -0.175 4.175
12 C -0.002 4.002
13 N -0.378 5.378
14 C 0.354 3.646
15 O -0.407 6.407
16 C -0.585 4.585
17 H 0.085 0.915
18 C -0.129 4.129
19 N -0.394 5.394
20 Si 0.725 3.275
21 H -0.200 1.200
22 H -0.206 1.206
23 H -0.191 1.191
24 H 0.077 0.923
25 H 0.091 0.909
26 H 0.092 0.908
27 H 0.160 0.840
28 H 0.134 0.866
29 H 0.129 0.871
30 H 0.088 0.912
31 H 0.078 0.922
32 H 0.074 0.926
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.084 0.916
36 H 0.056 0.944
37 H 0.112 0.888
38 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -5.690 -2.700 8.677 10.722
hybrid contribution 0.157 -0.485 -1.129 1.238
sum -5.533 -3.185 7.549 9.886
Atomic orbital electron populations
1.21735 0.79535 1.03479 1.01334 1.43402 1.04573 1.05884 1.58572
1.21154 0.90625 0.90048 1.15517 1.20468 0.94966 0.95201 1.10387
1.19901 0.94369 0.94027 1.07720 1.19431 0.90531 0.86714 1.07710
1.18994 0.95842 0.87415 0.86054 0.93746 1.21887 1.01795 0.94766
0.97411 1.21479 1.00338 0.95813 0.97519 1.21960 1.01378 0.98644
0.95474 1.21409 0.97736 0.82237 0.98776 1.48372 1.68582 1.07473
1.13324 1.18279 0.76771 0.86630 0.82901 1.90874 1.54365 1.15146
1.80303 1.20989 1.36951 1.01620 0.98896 0.91488 1.25647 0.94220
0.94232 0.98818 1.70015 1.26656 1.09689 1.33005 0.86508 0.78127
0.80186 0.82714 1.19981 1.20606 1.19055 0.92349 0.90901 0.90834
0.84046 0.86583 0.87075 0.91170 0.92153 0.92575 0.92532 0.92150
0.91634 0.94448 0.88818 0.92353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.26 10.74 59.84 0.64 1.91 16
2 N -0.45 -9.03 3.15 -119.91 -0.38 -9.41 16
3 C -0.05 -0.93 11.43 -16.75 -0.19 -1.13 16
4 C -0.18 -4.13 10.78 -39.78 -0.43 -4.56 16
5 C -0.14 -3.23 7.41 -39.78 -0.29 -3.52 16
6 C 0.07 1.48 3.72 -81.79 -0.30 1.18 16
7 C 0.22 4.40 3.17 -68.75 -0.22 4.18 16
8 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16
9 C -0.12 -1.97 5.25 -26.61 -0.14 -2.11 16
10 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16
11 C -0.14 -2.08 6.08 -26.61 -0.16 -2.24 16
12 C 0.12 2.27 6.32 -3.71 -0.02 2.25 16
13 N -0.64 -14.27 2.97 -168.19 -0.50 -14.77 16
14 C 0.55 15.20 7.44 -12.99 -0.10 15.10 16
15 O -0.53 -15.95 9.97 5.20 0.05 -15.90 16
16 C -0.55 -15.23 8.75 -35.63 -0.31 -15.54 16
17 H 0.07 1.72 5.85 -52.49 -0.31 1.42 16
18 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16
19 N -0.76 -22.83 11.87 55.55 0.66 -22.17 16
20 Si 0.90 20.31 29.56 -169.99 -5.02 15.28 16
21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16
23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
26 H 0.07 1.16 7.14 -51.93 -0.37 0.79 16
27 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16
28 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16
29 H 0.11 2.75 7.87 -52.49 -0.41 2.34 16
30 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16
31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16
33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.09 1.85 5.41 -51.93 -0.28 1.57 16
38 H 0.27 7.32 8.29 -40.82 -0.34 6.99 16
LS Contribution 301.52 15.07 4.54 4.54
Total: -1.00 -33.75 301.52 -7.91 -41.66
By element:
Atomic # 1 Polarization: 10.07 SS G_CDS: -5.48 Total: 4.58 kcal
Atomic # 6 Polarization: -2.04 SS G_CDS: -1.78 Total: -3.82 kcal
Atomic # 7 Polarization: -46.13 SS G_CDS: -0.22 Total: -46.35 kcal
Atomic # 8 Polarization: -15.95 SS G_CDS: 0.05 Total: -15.90 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -33.75 -7.91 -41.66 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000153935420.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.576 kcal
(2) G-P(sol) polarization free energy of solvation -33.752 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds