Wall clock time and date at job start Mon Mar 30 2020 05:01:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36343 * 125.63587 * 2 1
4 4 C 1.34844 * 108.21793 * 179.97438 * 3 2 1
5 5 C 1.40897 * 107.41948 * 359.77668 * 4 3 2
6 6 C 1.34843 * 107.41206 * 0.37476 * 5 4 3
7 7 C 1.50700 * 125.89242 * 179.88860 * 6 5 4
8 8 H 1.09000 * 109.59147 * 172.90154 * 7 6 5
9 9 C 1.53194 * 109.70262 * 52.54242 * 7 6 5
10 10 C 1.53035 * 109.31563 * 185.50999 * 9 7 6
11 11 C 1.53042 * 109.53530 * 61.36869 * 10 9 7
12 12 C 1.53192 * 109.31403 * 298.63434 * 11 10 9
13 13 N 1.46923 * 108.77246 * 54.63609 * 12 11 10
14 14 C 1.34781 * 120.63084 * 126.37523 * 13 12 11
15 15 O 1.21690 * 119.99942 * 182.59780 * 14 13 12
16 16 C 1.46369 * 119.99730 * 2.58667 * 14 13 12
17 17 H 1.08000 * 120.00664 * 9.26974 * 16 14 13
18 18 C 1.40052 * 120.00091 * 189.26998 * 16 14 13
19 19 N 1.30680 * 119.99769 * 0.02562 * 18 16 14
20 20 Si 1.86800 * 120.00416 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.46791 * 89.99780 * 20 18 16
22 22 H 1.48502 * 109.47260 * 210.00032 * 20 18 16
23 23 H 1.48501 * 109.46732 * 330.00154 * 20 18 16
24 24 H 1.09003 * 109.47288 * 270.01882 * 1 2 3
25 25 H 1.09006 * 109.47080 * 30.01687 * 1 2 3
26 26 H 1.08995 * 109.47452 * 150.01673 * 1 2 3
27 27 H 1.08000 * 125.89017 * 359.95526 * 3 2 1
28 28 H 1.07998 * 126.29469 * 180.02562 * 4 3 2
29 29 H 1.07997 * 126.29235 * 180.23660 * 5 4 3
30 30 H 1.09000 * 109.49983 * 305.46456 * 9 7 6
31 31 H 1.09002 * 109.49444 * 65.56233 * 9 7 6
32 32 H 1.09007 * 109.46297 * 301.34948 * 10 9 7
33 33 H 1.09002 * 109.45617 * 181.38310 * 10 9 7
34 34 H 1.09002 * 109.49707 * 178.68506 * 11 10 9
35 35 H 1.08997 * 109.52741 * 58.60501 * 11 10 9
36 36 H 1.08998 * 109.58762 * 294.84762 * 12 11 10
37 37 H 1.08997 * 109.58910 * 174.42485 * 12 11 10
38 38 H 0.96996 * 120.00249 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2593 1.1081 0.0000
4 6 3.5459 0.7045 0.0006
5 6 3.5460 -0.7045 0.0062
6 6 2.2594 -1.1081 0.0004
7 6 1.7817 -2.5374 0.0010
8 1 0.6988 -2.5608 0.1223
9 6 2.4441 -3.3028 1.1509
10 6 2.0612 -4.7818 1.0613
11 6 2.5684 -5.3625 -0.2607
12 6 1.9075 -4.6205 -1.4267
13 7 2.1492 -3.1800 -1.2682
14 6 2.6979 -2.4616 -2.2680
15 8 2.9366 -1.2792 -2.1076
16 6 3.0067 -3.1039 -3.5465
17 1 2.6616 -4.1081 -3.7437
18 6 3.7497 -2.4162 -4.5142
19 7 4.1677 -1.2013 -4.2754
20 14 4.1433 -3.2355 -6.1461
21 1 3.0640 -2.9386 -7.1220
22 1 5.4347 -2.7150 -6.6626
23 1 4.2440 -4.7042 -5.9510
24 1 -0.3634 0.0003 1.0277
25 1 -0.3633 0.8899 -0.5141
26 1 -0.3634 -0.8901 -0.5135
27 1 1.9171 2.1325 -0.0007
28 1 4.4165 1.3436 0.0011
29 1 4.4165 -1.3437 0.0116
30 1 3.5270 -3.2023 1.0788
31 1 2.1030 -2.8958 2.1028
32 1 0.9766 -4.8797 1.1086
33 1 2.5114 -5.3243 1.8927
34 1 2.3158 -6.4215 -0.3135
35 1 3.6502 -5.2431 -0.3199
36 1 0.8348 -4.8138 -1.4218
37 1 2.3381 -4.9619 -2.3680
38 1 4.6827 -0.7251 -4.9454
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000153935420.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:31
Heat of formation + Delta-G solvation = 15.793259 kcal
Electronic energy + Delta-G solvation = -20999.849545 eV
Core-core repulsion = 18036.172331 eV
Total energy + Delta-G solvation = -2963.677213 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.05708 -39.83226 -37.41460 -34.60471 -33.53208 -33.12071 -32.78571 -28.76468
-28.17053 -26.98230 -25.49427 -24.05641 -22.12952 -21.57055 -20.43358 -19.60314
-18.35775 -17.78399 -17.14245 -16.22805 -16.09297 -15.62495 -15.44045 -15.08447
-14.85338 -14.31134 -14.24406 -14.03069 -13.86269 -13.35839 -13.17445 -12.95390
-12.86458 -12.81391 -12.69172 -12.60111 -12.31644 -12.04666 -11.90910 -11.66451
-11.48858 -11.22523 -10.85392 -9.90487 -9.13174 -8.78295 -8.36625 -7.62286
-6.68024 1.37938 1.39092 1.52477 1.62575 2.25998 2.38084 2.42781
2.68270 3.06259 3.75313 3.86815 4.01003 4.07257 4.17257 4.24970
4.35180 4.44127 4.48117 4.53053 4.65309 4.69937 4.89521 4.93841
4.99876 5.03169 5.08098 5.17013 5.23623 5.27894 5.46608 5.53858
5.69655 5.73945 5.89520 6.23692 6.45190 6.56331 6.65996 6.90944
7.00095 7.60160 8.64459 8.86796
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.016981 B = 0.009397 C = 0.006845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1648.506066 B = 2979.032801 C = 4089.631158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.450 5.450
3 C -0.039 4.039
4 C -0.220 4.220
5 C -0.169 4.169
6 C 0.062 3.938
7 C 0.217 3.783
8 H 0.065 0.935
9 C -0.114 4.114
10 C -0.106 4.106
11 C -0.129 4.129
12 C 0.116 3.884
13 N -0.641 5.641
14 C 0.533 3.467
15 O -0.563 6.563
16 C -0.574 4.574
17 H 0.082 0.918
18 C 0.035 3.965
19 N -0.819 5.819
20 Si 0.982 3.018
21 H -0.267 1.267
22 H -0.278 1.278
23 H -0.250 1.250
24 H 0.095 0.905
25 H 0.089 0.911
26 H 0.068 0.932
27 H 0.178 0.822
28 H 0.119 0.881
29 H 0.080 0.920
30 H 0.042 0.958
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.096 0.904
35 H 0.042 0.958
36 H 0.061 0.939
37 H 0.075 0.925
38 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.732 -5.258 9.243 13.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.127 5.127
3 C -0.168 4.168
4 C -0.245 4.245
5 C -0.193 4.193
6 C -0.051 4.051
7 C 0.112 3.888
8 H 0.083 0.917
9 C -0.153 4.153
10 C -0.144 4.144
11 C -0.168 4.168
12 C -0.007 4.007
13 N -0.380 5.380
14 C 0.336 3.664
15 O -0.445 6.445
16 C -0.611 4.611
17 H 0.100 0.900
18 C -0.180 4.180
19 N -0.449 5.449
20 Si 0.803 3.197
21 H -0.192 1.192
22 H -0.203 1.203
23 H -0.174 1.174
24 H 0.113 0.887
25 H 0.108 0.892
26 H 0.087 0.913
27 H 0.195 0.805
28 H 0.137 0.863
29 H 0.098 0.902
30 H 0.061 0.939
31 H 0.100 0.900
32 H 0.096 0.904
33 H 0.102 0.898
34 H 0.114 0.886
35 H 0.061 0.939
36 H 0.080 0.920
37 H 0.093 0.907
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -7.897 -4.447 9.268 12.963
hybrid contribution 0.776 0.059 -1.229 1.455
sum -7.121 -4.388 8.039 11.601
Atomic orbital electron populations
1.22064 0.76471 1.04122 1.03939 1.43758 1.06545 1.05192 1.57242
1.21652 0.90021 0.91668 1.13419 1.20718 0.96532 0.94950 1.12341
1.19818 0.94630 0.94591 1.10295 1.19704 0.90314 0.88307 1.06729
1.19313 0.97107 0.86456 0.85898 0.91687 1.21842 0.99831 0.96645
0.96932 1.21474 1.01819 0.93599 0.97469 1.21908 0.99669 1.00321
0.94873 1.21620 0.99376 0.80206 0.99527 1.48213 1.67527 1.08987
1.13263 1.18569 0.77035 0.86666 0.84139 1.90848 1.55693 1.16651
1.81301 1.21499 1.37336 1.02470 0.99787 0.90030 1.26744 0.93531
0.94629 1.03079 1.70201 1.28130 1.11857 1.34692 0.85254 0.77871
0.79601 0.77015 1.19162 1.20337 1.17362 0.88656 0.89186 0.91331
0.80527 0.86309 0.90206 0.93920 0.90003 0.90382 0.89848 0.88597
0.93908 0.92035 0.90691 0.92329
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 2.12 10.74 127.77 1.37 3.49 16
2 N -0.45 -17.88 3.15 -533.27 -1.68 -19.56 16
3 C -0.04 -1.57 11.43 83.21 0.95 -0.62 16
4 C -0.22 -10.29 10.78 22.14 0.24 -10.05 16
5 C -0.17 -8.49 7.41 22.14 0.16 -8.33 16
6 C 0.06 2.77 3.72 41.08 0.15 2.92 16
7 C 0.22 8.42 3.17 44.23 0.14 8.56 16
8 H 0.07 2.25 6.85 -2.39 -0.02 2.24 16
9 C -0.11 -3.59 5.25 30.67 0.16 -3.43 16
10 C -0.11 -2.60 5.88 30.62 0.18 -2.42 16
11 C -0.13 -3.64 6.08 30.67 0.19 -3.45 16
12 C 0.12 4.11 6.32 86.36 0.55 4.66 16
13 N -0.64 -28.77 2.97 -804.23 -2.39 -31.16 16
14 C 0.53 30.36 7.44 86.36 0.64 31.00 16
15 O -0.56 -35.50 9.97 -4.32 -0.04 -35.54 16
16 C -0.57 -32.61 8.75 24.83 0.22 -32.39 16
17 H 0.08 4.22 5.85 -2.91 -0.02 4.21 16
18 C 0.03 1.96 5.50 85.30 0.47 2.43 16
19 N -0.82 -50.85 11.87 21.84 0.26 -50.59 16
20 Si 0.98 42.28 29.56 68.60 2.03 44.31 16
21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16
22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16
23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16
24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
25 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16
26 H 0.07 2.01 7.14 -2.39 -0.02 1.99 16
27 H 0.18 5.72 8.06 -2.91 -0.02 5.69 16
28 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16
29 H 0.08 4.35 7.87 -2.91 -0.02 4.33 16
30 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16
31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
32 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16
33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
37 H 0.07 2.92 5.41 -2.39 -0.01 2.91 16
38 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16
Total: -1.00 -77.87 301.52 4.64 -73.23
By element:
Atomic # 1 Polarization: 25.89 SS G_CDS: 1.05 Total: 26.94 kcal
Atomic # 6 Polarization: -13.05 SS G_CDS: 5.42 Total: -7.63 kcal
Atomic # 7 Polarization: -97.50 SS G_CDS: -3.81 Total: -101.31 kcal
Atomic # 8 Polarization: -35.50 SS G_CDS: -0.04 Total: -35.54 kcal
Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal
Total: -77.87 4.64 -73.23 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000153935420.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.025 kcal
(2) G-P(sol) polarization free energy of solvation -77.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds