Wall clock time and date at job start Mon Mar 30 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36343 * 125.63587 * 2 1 4 4 C 1.34844 * 108.21793 * 179.97438 * 3 2 1 5 5 C 1.40897 * 107.41948 * 359.77668 * 4 3 2 6 6 C 1.34843 * 107.41206 * 0.37476 * 5 4 3 7 7 C 1.50700 * 125.89242 * 179.88860 * 6 5 4 8 8 H 1.09000 * 109.59147 * 172.90154 * 7 6 5 9 9 C 1.53194 * 109.70262 * 52.54242 * 7 6 5 10 10 C 1.53035 * 109.31563 * 185.50999 * 9 7 6 11 11 C 1.53042 * 109.53530 * 61.36869 * 10 9 7 12 12 C 1.53192 * 109.31403 * 298.63434 * 11 10 9 13 13 N 1.46923 * 108.77246 * 54.63609 * 12 11 10 14 14 C 1.34781 * 120.63084 * 126.37523 * 13 12 11 15 15 O 1.21690 * 119.99942 * 182.59780 * 14 13 12 16 16 C 1.46369 * 119.99730 * 2.58667 * 14 13 12 17 17 H 1.08000 * 120.00664 * 9.26974 * 16 14 13 18 18 C 1.40052 * 120.00091 * 189.26998 * 16 14 13 19 19 N 1.30680 * 119.99769 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00416 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46791 * 89.99780 * 20 18 16 22 22 H 1.48502 * 109.47260 * 210.00032 * 20 18 16 23 23 H 1.48501 * 109.46732 * 330.00154 * 20 18 16 24 24 H 1.09003 * 109.47288 * 270.01882 * 1 2 3 25 25 H 1.09006 * 109.47080 * 30.01687 * 1 2 3 26 26 H 1.08995 * 109.47452 * 150.01673 * 1 2 3 27 27 H 1.08000 * 125.89017 * 359.95526 * 3 2 1 28 28 H 1.07998 * 126.29469 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.29235 * 180.23660 * 5 4 3 30 30 H 1.09000 * 109.49983 * 305.46456 * 9 7 6 31 31 H 1.09002 * 109.49444 * 65.56233 * 9 7 6 32 32 H 1.09007 * 109.46297 * 301.34948 * 10 9 7 33 33 H 1.09002 * 109.45617 * 181.38310 * 10 9 7 34 34 H 1.09002 * 109.49707 * 178.68506 * 11 10 9 35 35 H 1.08997 * 109.52741 * 58.60501 * 11 10 9 36 36 H 1.08998 * 109.58762 * 294.84762 * 12 11 10 37 37 H 1.08997 * 109.58910 * 174.42485 * 12 11 10 38 38 H 0.96996 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5459 0.7045 0.0006 5 6 3.5460 -0.7045 0.0062 6 6 2.2594 -1.1081 0.0004 7 6 1.7817 -2.5374 0.0010 8 1 0.6988 -2.5608 0.1223 9 6 2.4441 -3.3028 1.1509 10 6 2.0612 -4.7818 1.0613 11 6 2.5684 -5.3625 -0.2607 12 6 1.9075 -4.6205 -1.4267 13 7 2.1492 -3.1800 -1.2682 14 6 2.6979 -2.4616 -2.2680 15 8 2.9366 -1.2792 -2.1076 16 6 3.0067 -3.1039 -3.5465 17 1 2.6616 -4.1081 -3.7437 18 6 3.7497 -2.4162 -4.5142 19 7 4.1677 -1.2013 -4.2754 20 14 4.1433 -3.2355 -6.1461 21 1 3.0640 -2.9386 -7.1220 22 1 5.4347 -2.7150 -6.6626 23 1 4.2440 -4.7042 -5.9510 24 1 -0.3634 0.0003 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.9171 2.1325 -0.0007 28 1 4.4165 1.3436 0.0011 29 1 4.4165 -1.3437 0.0116 30 1 3.5270 -3.2023 1.0788 31 1 2.1030 -2.8958 2.1028 32 1 0.9766 -4.8797 1.1086 33 1 2.5114 -5.3243 1.8927 34 1 2.3158 -6.4215 -0.3135 35 1 3.6502 -5.2431 -0.3199 36 1 0.8348 -4.8138 -1.4218 37 1 2.3381 -4.9619 -2.3680 38 1 4.6827 -0.7251 -4.9454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153935420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:31 Heat of formation + Delta-G solvation = 15.793259 kcal Electronic energy + Delta-G solvation = -20999.849545 eV Core-core repulsion = 18036.172331 eV Total energy + Delta-G solvation = -2963.677213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.05708 -39.83226 -37.41460 -34.60471 -33.53208 -33.12071 -32.78571 -28.76468 -28.17053 -26.98230 -25.49427 -24.05641 -22.12952 -21.57055 -20.43358 -19.60314 -18.35775 -17.78399 -17.14245 -16.22805 -16.09297 -15.62495 -15.44045 -15.08447 -14.85338 -14.31134 -14.24406 -14.03069 -13.86269 -13.35839 -13.17445 -12.95390 -12.86458 -12.81391 -12.69172 -12.60111 -12.31644 -12.04666 -11.90910 -11.66451 -11.48858 -11.22523 -10.85392 -9.90487 -9.13174 -8.78295 -8.36625 -7.62286 -6.68024 1.37938 1.39092 1.52477 1.62575 2.25998 2.38084 2.42781 2.68270 3.06259 3.75313 3.86815 4.01003 4.07257 4.17257 4.24970 4.35180 4.44127 4.48117 4.53053 4.65309 4.69937 4.89521 4.93841 4.99876 5.03169 5.08098 5.17013 5.23623 5.27894 5.46608 5.53858 5.69655 5.73945 5.89520 6.23692 6.45190 6.56331 6.65996 6.90944 7.00095 7.60160 8.64459 8.86796 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.009397 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.506066 B = 2979.032801 C = 4089.631158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C -0.039 4.039 4 C -0.220 4.220 5 C -0.169 4.169 6 C 0.062 3.938 7 C 0.217 3.783 8 H 0.065 0.935 9 C -0.114 4.114 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.116 3.884 13 N -0.641 5.641 14 C 0.533 3.467 15 O -0.563 6.563 16 C -0.574 4.574 17 H 0.082 0.918 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.250 1.250 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -5.258 9.243 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.127 5.127 3 C -0.168 4.168 4 C -0.245 4.245 5 C -0.193 4.193 6 C -0.051 4.051 7 C 0.112 3.888 8 H 0.083 0.917 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.168 4.168 12 C -0.007 4.007 13 N -0.380 5.380 14 C 0.336 3.664 15 O -0.445 6.445 16 C -0.611 4.611 17 H 0.100 0.900 18 C -0.180 4.180 19 N -0.449 5.449 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.174 1.174 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.195 0.805 28 H 0.137 0.863 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.897 -4.447 9.268 12.963 hybrid contribution 0.776 0.059 -1.229 1.455 sum -7.121 -4.388 8.039 11.601 Atomic orbital electron populations 1.22064 0.76471 1.04122 1.03939 1.43758 1.06545 1.05192 1.57242 1.21652 0.90021 0.91668 1.13419 1.20718 0.96532 0.94950 1.12341 1.19818 0.94630 0.94591 1.10295 1.19704 0.90314 0.88307 1.06729 1.19313 0.97107 0.86456 0.85898 0.91687 1.21842 0.99831 0.96645 0.96932 1.21474 1.01819 0.93599 0.97469 1.21908 0.99669 1.00321 0.94873 1.21620 0.99376 0.80206 0.99527 1.48213 1.67527 1.08987 1.13263 1.18569 0.77035 0.86666 0.84139 1.90848 1.55693 1.16651 1.81301 1.21499 1.37336 1.02470 0.99787 0.90030 1.26744 0.93531 0.94629 1.03079 1.70201 1.28130 1.11857 1.34692 0.85254 0.77871 0.79601 0.77015 1.19162 1.20337 1.17362 0.88656 0.89186 0.91331 0.80527 0.86309 0.90206 0.93920 0.90003 0.90382 0.89848 0.88597 0.93908 0.92035 0.90691 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 10.74 127.77 1.37 3.49 16 2 N -0.45 -17.88 3.15 -533.27 -1.68 -19.56 16 3 C -0.04 -1.57 11.43 83.21 0.95 -0.62 16 4 C -0.22 -10.29 10.78 22.14 0.24 -10.05 16 5 C -0.17 -8.49 7.41 22.14 0.16 -8.33 16 6 C 0.06 2.77 3.72 41.08 0.15 2.92 16 7 C 0.22 8.42 3.17 44.23 0.14 8.56 16 8 H 0.07 2.25 6.85 -2.39 -0.02 2.24 16 9 C -0.11 -3.59 5.25 30.67 0.16 -3.43 16 10 C -0.11 -2.60 5.88 30.62 0.18 -2.42 16 11 C -0.13 -3.64 6.08 30.67 0.19 -3.45 16 12 C 0.12 4.11 6.32 86.36 0.55 4.66 16 13 N -0.64 -28.77 2.97 -804.23 -2.39 -31.16 16 14 C 0.53 30.36 7.44 86.36 0.64 31.00 16 15 O -0.56 -35.50 9.97 -4.32 -0.04 -35.54 16 16 C -0.57 -32.61 8.75 24.83 0.22 -32.39 16 17 H 0.08 4.22 5.85 -2.91 -0.02 4.21 16 18 C 0.03 1.96 5.50 85.30 0.47 2.43 16 19 N -0.82 -50.85 11.87 21.84 0.26 -50.59 16 20 Si 0.98 42.28 29.56 68.60 2.03 44.31 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.07 2.01 7.14 -2.39 -0.02 1.99 16 27 H 0.18 5.72 8.06 -2.91 -0.02 5.69 16 28 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 29 H 0.08 4.35 7.87 -2.91 -0.02 4.33 16 30 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.92 5.41 -2.39 -0.01 2.91 16 38 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -77.87 301.52 4.64 -73.23 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.05 Total: 26.94 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.42 Total: -7.63 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.81 Total: -101.31 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.04 Total: -35.54 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -77.87 4.64 -73.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153935420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.025 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds