Wall clock time and date at job start Mon Mar 30 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46626 * 2 1 4 4 C 1.50699 * 109.47441 * 119.99548 * 2 1 3 5 5 H 1.07997 * 119.99825 * 119.99568 * 4 2 1 6 6 C 1.37877 * 119.99998 * 300.00762 * 4 2 1 7 7 N 1.31519 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99890 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47359 * 90.00233 * 8 6 4 10 10 H 1.48512 * 109.46917 * 209.99815 * 8 6 4 11 11 H 1.48501 * 109.47031 * 329.99345 * 8 6 4 12 12 N 1.46494 * 109.47376 * 240.00038 * 2 1 3 13 13 C 1.34780 * 120.00445 * 84.99817 * 12 2 1 14 14 O 1.21284 * 119.99435 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00306 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46887 * 179.97438 * 15 13 12 17 17 C 1.38256 * 119.99970 * 265.24661 * 16 15 13 18 18 C 1.38217 * 119.99754 * 180.27482 * 17 16 15 19 19 C 1.38260 * 120.00037 * 359.75754 * 18 17 16 20 20 C 1.38215 * 120.00097 * 359.97105 * 19 18 17 21 21 C 1.38220 * 120.00117 * 85.00238 * 16 15 13 22 22 C 1.50701 * 119.99744 * 359.97438 * 21 16 15 23 23 N 1.46901 * 109.46921 * 79.72821 * 22 21 16 24 24 H 1.09007 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47565 * 300.00028 * 1 2 3 26 26 H 1.09002 * 109.47392 * 60.00620 * 1 2 3 27 27 H 0.96994 * 119.99849 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00362 * 264.99637 * 12 2 1 29 29 H 1.09000 * 109.47234 * 60.00026 * 15 13 12 30 30 H 1.09000 * 109.46715 * 299.99824 * 15 13 12 31 31 H 1.07994 * 119.99998 * 0.05493 * 17 16 15 32 32 H 1.08000 * 119.99542 * 179.77477 * 18 17 16 33 33 H 1.07993 * 119.99912 * 180.02562 * 19 18 17 34 34 H 1.07988 * 119.99999 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47060 * 199.73002 * 22 21 16 36 36 H 1.09001 * 109.47380 * 319.73090 * 22 21 16 37 37 H 1.00908 * 110.99847 * 179.97438 * 23 22 21 38 38 H 1.00899 * 111.00283 * 303.95218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4859 -2.5660 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6489 -0.7288 -3.5877 16 6 2.6991 0.2394 -4.7414 17 6 1.6352 0.3231 -5.6204 18 6 1.6837 1.2071 -6.6818 19 6 2.7939 2.0112 -6.8616 20 6 3.8552 1.9315 -5.9797 21 6 3.8066 1.0473 -4.9180 22 6 4.9637 0.9603 -3.9563 23 7 5.7959 -0.2017 -4.2955 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 0.7093 1.1618 3.4843 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5506 -3.8325 30 1 3.6481 -1.1213 -3.3985 31 1 0.7678 -0.3047 -5.4796 32 1 0.8541 1.2699 -7.3705 33 1 2.8316 2.7022 -7.6907 34 1 4.7222 2.5598 -6.1200 35 1 5.5624 1.8686 -4.0252 36 1 4.5844 0.8514 -2.9403 37 1 6.5795 -0.2817 -3.6648 38 1 5.2484 -1.0492 -4.3018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157078670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:48 Heat of formation + Delta-G solvation = -23.465549 kcal Electronic energy + Delta-G solvation = -19540.440247 eV Core-core repulsion = 16575.060643 eV Total energy + Delta-G solvation = -2965.379603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92405 -38.34540 -34.96351 -34.73792 -32.58803 -32.23271 -30.45010 -29.23644 -27.15237 -25.27840 -24.72802 -22.27157 -21.32571 -20.35541 -19.39481 -17.25173 -16.47232 -16.16954 -15.76819 -15.40196 -15.19435 -14.70667 -14.30629 -14.10697 -13.93719 -13.13119 -13.05118 -12.87757 -12.40870 -12.22604 -12.12411 -11.96460 -11.60828 -11.13562 -10.99835 -10.92250 -10.78288 -10.68374 -10.32771 -10.26301 -9.15600 -9.08174 -8.86951 -8.60557 -8.56786 -8.41838 -7.93252 -6.15055 -4.24789 1.46866 1.55295 3.21824 3.28561 3.30145 3.36527 3.78096 4.18868 4.39829 4.65622 4.82526 4.88510 5.07099 5.08903 5.17103 5.31615 5.40861 5.53969 5.58563 5.67806 5.75221 5.82115 6.17175 6.18707 6.59800 6.61774 6.77460 6.80208 6.94585 6.99312 7.12928 7.14995 7.35035 7.43803 7.53683 7.66697 7.88824 8.12579 8.63927 8.75507 9.11109 9.43150 10.90866 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.004619 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.661388 B = 6059.968214 C = 6534.445211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.501 3.499 14 O -0.544 6.544 15 C -0.110 4.110 16 C -0.050 4.050 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.064 4.064 22 C 0.095 3.905 23 N -0.844 5.844 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.343 0.657 38 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -3.241 -14.733 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.360 5.360 13 C 0.285 3.715 14 O -0.422 6.422 15 C -0.150 4.150 16 C -0.051 4.051 17 C -0.126 4.126 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.123 4.123 21 C -0.065 4.065 22 C -0.034 4.034 23 N -0.375 5.375 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.155 0.845 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.761 -1.886 -15.267 16.103 hybrid contribution 0.043 -1.236 1.890 2.259 sum 4.804 -3.122 -13.377 14.552 Atomic orbital electron populations 1.22071 0.98509 0.99057 1.00885 1.18723 0.91018 0.93920 0.80015 0.93497 1.21210 1.32501 1.13225 0.90356 0.92139 1.24894 0.94779 0.94959 0.99067 1.69906 1.35778 1.22443 1.23903 0.86452 0.78617 0.79827 0.82216 1.20563 1.21030 1.19844 1.46546 1.65371 1.13481 1.10553 1.20255 0.79137 0.87672 0.84417 1.90688 1.50624 1.15908 1.84965 1.20815 1.03065 0.98252 0.92863 1.19187 0.94104 0.96852 0.94937 1.20942 0.97532 0.99297 0.94861 1.21040 0.98155 0.96636 0.98119 1.21054 0.94137 0.99622 0.99573 1.20929 0.98452 0.98514 0.94369 1.19518 0.94801 0.96162 0.95978 1.20720 0.92198 0.94691 0.95837 1.58853 1.13197 1.06176 1.59295 0.95507 0.89181 0.96687 0.92550 0.78037 0.88451 0.89298 0.86288 0.86334 0.86376 0.86265 0.90282 0.93700 0.84472 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.72 2.56 -69.09 -0.18 6.54 16 3 H 0.05 1.38 7.58 -51.92 -0.39 0.99 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.85 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.71 -14.51 5.07 -54.93 -0.28 -14.79 16 13 C 0.50 9.79 7.00 -10.99 -0.08 9.72 16 14 O -0.54 -13.03 15.70 5.55 0.09 -12.94 16 15 C -0.11 -1.56 5.17 -29.04 -0.15 -1.71 16 16 C -0.05 -0.75 4.36 -104.62 -0.46 -1.20 16 17 C -0.11 -1.52 9.68 -39.58 -0.38 -1.90 16 18 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 19 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.10 -1.40 9.67 -39.58 -0.38 -1.78 16 21 C -0.06 -0.94 5.39 -104.62 -0.56 -1.51 16 22 C 0.10 1.30 6.17 -4.97 -0.03 1.27 16 23 N -0.84 -9.53 9.60 -11.41 -0.11 -9.63 16 24 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 29 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 30 H 0.09 1.07 5.42 -51.93 -0.28 0.79 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 35 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 36 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 37 H 0.34 3.27 9.08 -39.29 -0.36 2.91 16 38 H 0.34 3.56 7.10 -39.29 -0.28 3.29 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -31.55 317.03 -8.22 -39.77 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.23 Total: 12.04 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.07 Total: -10.45 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.24 Total: -48.65 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.55 -8.22 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157078670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.307 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds