Wall clock time and date at job start Mon Mar 30 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46626 * 2 1 4 4 C 1.50699 * 109.47441 * 119.99548 * 2 1 3 5 5 H 1.07997 * 119.99825 * 119.99568 * 4 2 1 6 6 C 1.37877 * 119.99998 * 300.00762 * 4 2 1 7 7 N 1.31519 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99890 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47359 * 90.00233 * 8 6 4 10 10 H 1.48512 * 109.46917 * 209.99815 * 8 6 4 11 11 H 1.48501 * 109.47031 * 329.99345 * 8 6 4 12 12 N 1.46494 * 109.47376 * 240.00038 * 2 1 3 13 13 C 1.34780 * 120.00445 * 84.99817 * 12 2 1 14 14 O 1.21284 * 119.99435 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00306 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46887 * 179.97438 * 15 13 12 17 17 C 1.38256 * 119.99970 * 265.24661 * 16 15 13 18 18 C 1.38217 * 119.99754 * 180.27482 * 17 16 15 19 19 C 1.38260 * 120.00037 * 359.75754 * 18 17 16 20 20 C 1.38215 * 120.00097 * 359.97105 * 19 18 17 21 21 C 1.38220 * 120.00117 * 85.00238 * 16 15 13 22 22 C 1.50701 * 119.99744 * 359.97438 * 21 16 15 23 23 N 1.46901 * 109.46921 * 79.72821 * 22 21 16 24 24 H 1.09007 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47565 * 300.00028 * 1 2 3 26 26 H 1.09002 * 109.47392 * 60.00620 * 1 2 3 27 27 H 0.96994 * 119.99849 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00362 * 264.99637 * 12 2 1 29 29 H 1.09000 * 109.47234 * 60.00026 * 15 13 12 30 30 H 1.09000 * 109.46715 * 299.99824 * 15 13 12 31 31 H 1.07994 * 119.99998 * 0.05493 * 17 16 15 32 32 H 1.08000 * 119.99542 * 179.77477 * 18 17 16 33 33 H 1.07993 * 119.99912 * 180.02562 * 19 18 17 34 34 H 1.07988 * 119.99999 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47060 * 199.73002 * 22 21 16 36 36 H 1.09001 * 109.47380 * 319.73090 * 22 21 16 37 37 H 1.00908 * 110.99847 * 179.97438 * 23 22 21 38 38 H 1.00899 * 111.00283 * 303.95218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4859 -2.5660 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6489 -0.7288 -3.5877 16 6 2.6991 0.2394 -4.7414 17 6 1.6352 0.3231 -5.6204 18 6 1.6837 1.2071 -6.6818 19 6 2.7939 2.0112 -6.8616 20 6 3.8552 1.9315 -5.9797 21 6 3.8066 1.0473 -4.9180 22 6 4.9637 0.9603 -3.9563 23 7 5.7959 -0.2017 -4.2955 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 0.7093 1.1618 3.4843 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5506 -3.8325 30 1 3.6481 -1.1213 -3.3985 31 1 0.7678 -0.3047 -5.4796 32 1 0.8541 1.2699 -7.3705 33 1 2.8316 2.7022 -7.6907 34 1 4.7222 2.5598 -6.1200 35 1 5.5624 1.8686 -4.0252 36 1 4.5844 0.8514 -2.9403 37 1 6.5795 -0.2817 -3.6648 38 1 5.2484 -1.0492 -4.3018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157078670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:48 Heat of formation + Delta-G solvation = -45.795577 kcal Electronic energy + Delta-G solvation = -19541.408549 eV Core-core repulsion = 16575.060643 eV Total energy + Delta-G solvation = -2966.347906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17879 -39.76745 -36.72206 -35.86329 -34.34525 -33.56616 -31.43657 -31.01585 -28.42792 -27.34937 -25.76720 -23.62799 -22.72157 -21.64831 -21.03073 -18.96110 -17.63339 -17.50186 -17.24329 -16.94001 -16.52725 -16.01089 -15.59470 -15.47970 -15.21224 -14.74680 -14.40640 -14.10573 -13.95287 -13.73892 -13.23079 -13.14154 -13.13242 -12.94576 -12.83135 -12.71161 -12.28120 -12.14498 -11.90577 -11.74532 -11.12877 -10.80016 -10.59589 -9.85008 -9.75466 -9.64164 -9.46326 -8.18914 -6.36903 0.43494 0.53022 1.44188 1.44415 1.55351 1.82110 2.34399 2.59144 2.97439 3.11717 3.62102 3.77667 3.88165 4.04489 4.10997 4.21398 4.33286 4.37299 4.50521 4.67647 4.69541 4.73973 4.82664 4.90085 5.08123 5.16256 5.18510 5.42216 5.59530 5.60034 5.62871 5.67539 5.73549 5.89470 6.06198 6.08566 6.16977 6.52380 6.71478 6.97053 7.31395 7.57201 8.87398 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.004619 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.661388 B = 6059.968214 C = 6534.445211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.707 5.707 13 C 0.500 3.500 14 O -0.592 6.592 15 C -0.094 4.094 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.083 4.083 22 C 0.102 3.898 23 N -0.838 5.838 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.016 0.984 37 H 0.353 0.647 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -4.957 -15.775 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.356 5.356 13 C 0.287 3.713 14 O -0.473 6.473 15 C -0.134 4.134 16 C -0.074 4.074 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.084 4.084 22 C -0.028 4.028 23 N -0.370 5.370 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.146 0.854 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.034 0.966 37 H 0.167 0.833 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.494 -3.652 -16.334 17.616 hybrid contribution -0.176 -0.630 2.131 2.229 sum 5.318 -4.283 -14.204 15.760 Atomic orbital electron populations 1.21890 0.98439 0.99445 0.99410 1.18296 0.91027 0.91757 0.82110 0.98791 1.21547 1.32569 1.13568 0.90755 0.90747 1.25820 0.94833 0.95576 1.02399 1.70062 1.37013 1.24016 1.24602 0.85338 0.77734 0.79251 0.77970 1.20386 1.21022 1.18212 1.46287 1.65458 1.14220 1.09668 1.21151 0.77654 0.87170 0.85318 1.90663 1.52540 1.18329 1.85791 1.20756 1.04643 0.98308 0.89704 1.19348 0.94807 0.97727 0.95543 1.21248 0.97669 0.99970 0.95251 1.21415 0.99033 0.95967 0.98099 1.21441 0.93507 0.99588 0.99888 1.21229 0.99542 0.98540 0.94414 1.19757 0.95192 0.96758 0.96670 1.20588 0.92341 0.95770 0.94147 1.58825 1.13119 1.05712 1.59349 0.93964 0.91652 0.97113 0.92576 0.75972 0.85406 0.87103 0.85134 0.83764 0.83603 0.84878 0.90033 0.96575 0.83340 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 2 C 0.27 14.10 2.56 44.24 0.11 14.21 16 3 H -0.01 -0.36 7.58 -2.38 -0.02 -0.38 16 4 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.87 11.32 21.45 0.24 -52.62 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 12 N -0.71 -28.72 5.07 -446.10 -2.26 -30.98 16 13 C 0.50 19.58 7.00 87.66 0.61 20.19 16 14 O -0.59 -29.26 15.70 -3.04 -0.05 -29.31 16 15 C -0.09 -2.55 5.17 29.10 0.15 -2.40 16 16 C -0.07 -2.12 4.36 -19.86 -0.09 -2.20 16 17 C -0.12 -3.27 9.68 22.27 0.22 -3.06 16 18 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 19 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 20 C -0.12 -3.06 9.67 22.27 0.22 -2.84 16 21 C -0.08 -2.39 5.39 -19.86 -0.11 -2.50 16 22 C 0.10 2.76 6.17 85.56 0.53 3.29 16 23 N -0.84 -17.78 9.60 -190.00 -1.82 -19.61 16 24 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.41 13.50 8.54 -92.71 -0.79 12.71 16 29 H 0.13 2.66 8.05 -2.39 -0.02 2.64 16 30 H 0.11 2.47 5.42 -2.39 -0.01 2.46 16 31 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.13 2.91 8.04 -2.92 -0.02 2.88 16 35 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 36 H 0.02 0.52 6.71 -2.39 -0.02 0.51 16 37 H 0.35 6.25 9.08 -89.69 -0.81 5.44 16 38 H 0.34 6.62 7.10 -89.69 -0.64 5.99 16 Total: -1.00 -69.92 317.03 0.42 -69.50 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -1.15 Total: 33.47 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.43 Total: -14.09 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.84 Total: -103.21 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -69.92 0.42 -69.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157078670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.707 kcal (2) G-P(sol) polarization free energy of solvation -69.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds