Wall clock time and date at job start Mon Mar 30 2020 04:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38349 * 120.44898 * 2 1 4 4 C 1.38835 * 118.50359 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.33766 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46865 * 90.00397 * 5 4 3 7 7 C 1.38068 * 119.33060 * 0.02562 * 4 3 2 8 8 N 1.31945 * 120.85368 * 359.96835 * 7 4 3 9 9 C 1.32427 * 121.62163 * 0.03268 * 8 7 4 10 10 N 1.39005 * 119.70318 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00370 * 58.05086 * 10 9 8 12 12 C 1.50694 * 109.46652 * 76.10880 * 11 10 9 13 13 H 1.07998 * 120.00416 * 355.12336 * 12 11 10 14 14 C 1.37885 * 119.99688 * 175.12514 * 12 11 10 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00056 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47332 * 120.00092 * 16 14 12 19 19 H 1.48496 * 109.47375 * 239.99960 * 16 14 12 20 20 C 1.46906 * 110.99673 * 294.09759 * 10 9 8 21 21 C 1.53001 * 117.49790 * 256.50693 * 20 10 9 22 22 C 1.53004 * 117.49603 * 187.84971 * 20 10 9 23 23 H 1.09003 * 109.47345 * 95.11803 * 1 2 3 24 24 H 1.09003 * 109.47169 * 215.12107 * 1 2 3 25 25 H 1.09001 * 109.47063 * 335.11819 * 1 2 3 26 26 H 1.07994 * 120.74455 * 0.25756 * 3 2 1 27 27 H 1.08996 * 109.47509 * 210.00232 * 5 4 3 28 28 H 1.08996 * 109.46901 * 330.00829 * 5 4 3 29 29 H 0.96698 * 114.00161 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.57532 * 179.97438 * 7 4 3 31 31 H 1.08998 * 109.47146 * 196.10900 * 11 10 9 32 32 H 1.08997 * 109.46903 * 316.10991 * 11 10 9 33 33 H 0.96994 * 120.00244 * 179.97438 * 15 14 12 34 34 H 1.08998 * 115.54923 * 42.18124 * 20 10 9 35 35 H 1.09001 * 117.50051 * 0.02562 * 21 20 10 36 36 H 1.09000 * 117.49625 * 145.01778 * 21 20 10 37 37 H 1.09001 * 117.49821 * 214.97715 * 22 20 10 38 38 H 1.08991 * 117.49918 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1927 0.0000 4 6 3.5956 1.1456 0.0005 5 6 4.4005 2.4196 0.0011 6 8 4.6544 2.8219 1.3486 7 6 4.2307 -0.0804 0.0005 8 7 3.5362 -1.2023 0.0006 9 6 2.2119 -1.1990 0.0001 10 7 1.5202 -2.4048 -0.0003 11 6 1.8872 -3.2228 1.1634 12 6 1.2118 -2.6761 2.3946 13 1 0.6377 -1.7632 2.3354 14 6 1.3267 -3.3414 3.5968 15 7 2.0261 -4.4528 3.6691 16 14 0.4901 -2.6635 5.1232 17 1 -0.2279 -1.4100 4.7788 18 1 -0.4783 -3.6627 5.6420 19 1 1.5118 -2.3786 6.1625 20 6 1.7444 -3.1399 -1.2523 21 6 0.6202 -3.1272 -2.2900 22 6 0.9101 -4.4001 -1.4907 23 1 -0.3634 -0.0917 -1.0236 24 1 -0.3634 -0.8406 0.5912 25 1 -0.3633 0.9323 0.4324 26 1 1.6877 2.1390 0.0042 27 1 5.3471 2.2516 -0.5123 28 1 3.8423 3.2022 -0.5126 29 1 5.1689 3.6370 1.4255 30 1 5.3099 -0.1217 0.0005 31 1 1.5669 -4.2517 0.9998 32 1 2.9682 -3.1960 1.2999 33 1 2.1072 -4.9207 4.5149 34 1 2.7701 -3.1380 -1.6213 35 1 -0.2856 -2.5731 -2.0440 36 1 0.9063 -3.1173 -3.3418 37 1 1.3868 -5.2271 -2.0170 38 1 0.1953 -4.6839 -0.7185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161905282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:24 Heat of formation + Delta-G solvation = 21.913654 kcal Electronic energy + Delta-G solvation = -19958.352523 eV Core-core repulsion = 16994.940710 eV Total energy + Delta-G solvation = -2963.411813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14251 -37.64121 -36.54227 -34.01136 -33.07497 -32.48446 -30.72508 -27.12820 -26.65180 -25.13287 -23.09807 -22.22124 -21.62670 -20.70975 -19.63019 -17.46156 -16.88785 -16.67789 -15.83965 -15.29245 -14.79708 -14.38650 -14.22064 -13.99952 -13.33813 -13.24943 -12.76749 -12.61550 -12.31285 -12.14655 -12.03284 -11.67865 -11.27370 -11.10682 -10.98629 -10.83300 -10.62666 -10.20477 -10.13272 -9.98140 -9.64945 -9.20315 -9.12974 -8.98505 -8.40023 -8.08432 -7.55925 -5.98754 -3.99380 1.51229 1.77838 3.33647 3.40739 3.45581 4.05943 4.29742 4.37104 4.54644 4.61784 4.95187 5.06135 5.08246 5.31837 5.37249 5.38805 5.45961 5.49595 5.56549 5.67680 5.83778 5.98723 6.05045 6.11951 6.19374 6.21898 6.46896 6.56368 6.60203 6.67503 6.83743 7.02836 7.29041 7.49461 7.59353 7.78627 8.10512 8.27127 8.46771 8.57011 9.06498 9.63324 11.11937 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.008247 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.222852 B = 3394.370712 C = 4640.931431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.111 4.111 3 C -0.061 4.061 4 C -0.170 4.170 5 C 0.130 3.870 6 O -0.565 6.565 7 C 0.123 3.877 8 N -0.507 5.507 9 C 0.348 3.652 10 N -0.463 5.463 11 C 0.196 3.804 12 C -0.505 4.505 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.285 1.285 20 C 0.019 3.981 21 C -0.175 4.175 22 C -0.164 4.164 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.375 0.625 30 H 0.144 0.856 31 H 0.041 0.959 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 11.167 -11.019 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.172 4.172 5 C 0.052 3.948 6 O -0.371 6.371 7 C -0.036 4.036 8 N -0.218 5.218 9 C 0.119 3.881 10 N -0.187 5.187 11 C 0.073 3.927 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.089 4.089 21 C -0.213 4.213 22 C -0.202 4.202 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.222 0.778 30 H 0.162 0.838 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.979 9.742 -10.719 14.517 hybrid contribution 0.476 1.377 0.877 1.700 sum 1.455 11.119 -9.842 14.920 Atomic orbital electron populations 1.20596 0.89956 1.02944 1.01992 1.20544 0.97844 0.91916 1.01196 1.21198 0.93029 0.97780 0.96667 1.20392 0.94395 0.95419 1.07031 1.20785 0.97305 0.93144 0.83591 1.86663 1.77290 1.46554 1.26568 1.22281 0.99485 0.86937 0.94940 1.67823 1.09593 1.31204 1.13220 1.19762 0.86182 0.91913 0.90213 1.60212 1.52704 1.02869 1.02903 1.19898 0.95912 0.92312 0.84549 1.21174 1.31389 1.09309 0.92545 0.92012 1.24932 0.95600 0.94978 0.98883 1.69964 1.40758 1.16908 1.25938 0.86486 0.79247 0.79018 0.82987 1.19664 1.20964 1.21122 1.22298 0.94434 0.99657 0.92544 1.23059 1.00838 1.01766 0.95608 1.22971 1.03448 0.90921 1.02832 0.91918 0.89042 0.92849 0.85433 0.92903 0.93104 0.77837 0.83828 0.94102 0.97077 0.93000 0.89705 0.88474 0.89696 0.89262 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.73 36.00 0.35 -1.27 16 2 C -0.11 -2.10 5.92 -104.27 -0.62 -2.72 16 3 C -0.06 -1.00 9.51 -39.32 -0.37 -1.37 16 4 C -0.17 -2.73 5.53 -104.46 -0.58 -3.31 16 5 C 0.13 1.53 7.19 36.01 0.26 1.79 16 6 O -0.57 -7.27 13.64 -35.23 -0.48 -7.76 16 7 C 0.12 2.22 10.85 -17.57 -0.19 2.03 16 8 N -0.51 -11.00 9.27 -12.44 -0.12 -11.12 16 9 C 0.35 7.52 4.95 -155.01 -0.77 6.76 16 10 N -0.46 -10.33 3.60 -167.00 -0.60 -10.93 16 11 C 0.20 5.28 4.67 -4.98 -0.02 5.26 16 12 C -0.51 -14.58 8.97 -34.44 -0.31 -14.89 16 13 H 0.06 1.77 7.11 -52.49 -0.37 1.40 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.02 0.36 5.01 -67.71 -0.34 0.02 16 21 C -0.17 -2.71 10.46 -26.69 -0.28 -2.99 16 22 C -0.16 -2.79 9.59 -26.69 -0.26 -3.04 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 1.76 6.94 -51.93 -0.36 1.40 16 25 H 0.05 0.76 8.06 -51.93 -0.42 0.35 16 26 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.38 2.65 9.12 45.56 0.42 3.07 16 30 H 0.14 2.21 8.06 -52.48 -0.42 1.78 16 31 H 0.04 1.15 6.95 -51.93 -0.36 0.79 16 32 H 0.01 0.34 7.37 -51.93 -0.38 -0.05 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.67 7.94 -51.93 -0.41 1.26 16 35 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.10 1.92 7.85 -51.93 -0.41 1.51 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -33.90 323.00 -8.65 -42.55 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.81 Total: 3.71 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.22 Total: -12.16 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.02 Total: -48.57 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.48 Total: -7.76 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.90 -8.65 -42.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161905282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.463 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds