Wall clock time and date at job start Mon Mar 30 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38349 * 120.44898 * 2 1 4 4 C 1.38835 * 118.50359 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.33766 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46865 * 90.00397 * 5 4 3 7 7 C 1.38068 * 119.33060 * 0.02562 * 4 3 2 8 8 N 1.31945 * 120.85368 * 359.96835 * 7 4 3 9 9 C 1.32427 * 121.62163 * 0.03268 * 8 7 4 10 10 N 1.39005 * 119.70318 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00370 * 58.05086 * 10 9 8 12 12 C 1.50694 * 109.46652 * 76.10880 * 11 10 9 13 13 H 1.07998 * 120.00416 * 355.12336 * 12 11 10 14 14 C 1.37885 * 119.99688 * 175.12514 * 12 11 10 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00056 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47332 * 120.00092 * 16 14 12 19 19 H 1.48496 * 109.47375 * 239.99960 * 16 14 12 20 20 C 1.46906 * 110.99673 * 294.09759 * 10 9 8 21 21 C 1.53001 * 117.49790 * 256.50693 * 20 10 9 22 22 C 1.53004 * 117.49603 * 187.84971 * 20 10 9 23 23 H 1.09003 * 109.47345 * 95.11803 * 1 2 3 24 24 H 1.09003 * 109.47169 * 215.12107 * 1 2 3 25 25 H 1.09001 * 109.47063 * 335.11819 * 1 2 3 26 26 H 1.07994 * 120.74455 * 0.25756 * 3 2 1 27 27 H 1.08996 * 109.47509 * 210.00232 * 5 4 3 28 28 H 1.08996 * 109.46901 * 330.00829 * 5 4 3 29 29 H 0.96698 * 114.00161 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.57532 * 179.97438 * 7 4 3 31 31 H 1.08998 * 109.47146 * 196.10900 * 11 10 9 32 32 H 1.08997 * 109.46903 * 316.10991 * 11 10 9 33 33 H 0.96994 * 120.00244 * 179.97438 * 15 14 12 34 34 H 1.08998 * 115.54923 * 42.18124 * 20 10 9 35 35 H 1.09001 * 117.50051 * 0.02562 * 21 20 10 36 36 H 1.09000 * 117.49625 * 145.01778 * 21 20 10 37 37 H 1.09001 * 117.49821 * 214.97715 * 22 20 10 38 38 H 1.08991 * 117.49918 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1927 0.0000 4 6 3.5956 1.1456 0.0005 5 6 4.4005 2.4196 0.0011 6 8 4.6544 2.8219 1.3486 7 6 4.2307 -0.0804 0.0005 8 7 3.5362 -1.2023 0.0006 9 6 2.2119 -1.1990 0.0001 10 7 1.5202 -2.4048 -0.0003 11 6 1.8872 -3.2228 1.1634 12 6 1.2118 -2.6761 2.3946 13 1 0.6377 -1.7632 2.3354 14 6 1.3267 -3.3414 3.5968 15 7 2.0261 -4.4528 3.6691 16 14 0.4901 -2.6635 5.1232 17 1 -0.2279 -1.4100 4.7788 18 1 -0.4783 -3.6627 5.6420 19 1 1.5118 -2.3786 6.1625 20 6 1.7444 -3.1399 -1.2523 21 6 0.6202 -3.1272 -2.2900 22 6 0.9101 -4.4001 -1.4907 23 1 -0.3634 -0.0917 -1.0236 24 1 -0.3634 -0.8406 0.5912 25 1 -0.3633 0.9323 0.4324 26 1 1.6877 2.1390 0.0042 27 1 5.3471 2.2516 -0.5123 28 1 3.8423 3.2022 -0.5126 29 1 5.1689 3.6370 1.4255 30 1 5.3099 -0.1217 0.0005 31 1 1.5669 -4.2517 0.9998 32 1 2.9682 -3.1960 1.2999 33 1 2.1072 -4.9207 4.5149 34 1 2.7701 -3.1380 -1.6213 35 1 -0.2856 -2.5731 -2.0440 36 1 0.9063 -3.1173 -3.3418 37 1 1.3868 -5.2271 -2.0170 38 1 0.1953 -4.6839 -0.7185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161905282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:23 Heat of formation + Delta-G solvation = -2.130432 kcal Electronic energy + Delta-G solvation = -19959.395153 eV Core-core repulsion = 16994.940710 eV Total energy + Delta-G solvation = -2964.454443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56989 -39.04348 -37.58773 -35.67965 -34.49005 -34.41267 -32.19607 -29.07411 -27.95819 -26.48715 -24.77816 -23.84184 -23.05713 -22.03469 -21.16374 -18.68955 -18.35694 -18.24977 -17.58688 -16.95883 -16.27620 -15.89753 -15.70102 -15.05537 -14.81697 -14.70557 -14.36164 -14.04135 -13.80185 -13.67866 -13.48962 -13.25789 -12.90277 -12.82845 -12.65421 -12.30045 -12.25179 -12.09991 -11.68933 -11.38101 -10.99924 -10.90586 -10.65916 -10.53091 -10.41127 -9.50742 -9.30852 -8.22470 -6.31666 0.13116 0.41797 1.35049 1.36247 1.49362 2.35468 2.71359 2.88398 2.97052 3.12131 3.57755 3.67157 3.95682 4.01382 4.04580 4.15497 4.17508 4.19196 4.45068 4.49244 4.58579 4.67796 4.77493 4.81437 4.85742 4.93858 5.06368 5.17030 5.18905 5.29305 5.34416 5.37818 5.46256 5.61934 5.75942 5.99938 6.36015 6.63356 6.82038 6.98495 7.13365 7.36170 8.88911 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.008247 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.222852 B = 3394.370712 C = 4640.931431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.124 4.124 3 C -0.059 4.059 4 C -0.161 4.161 5 C 0.132 3.868 6 O -0.594 6.594 7 C 0.100 3.900 8 N -0.548 5.548 9 C 0.307 3.693 10 N -0.457 5.457 11 C 0.218 3.782 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.283 1.283 20 C -0.018 4.018 21 C -0.135 4.135 22 C -0.165 4.165 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.166 0.834 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.400 0.600 30 H 0.162 0.838 31 H 0.016 0.984 32 H -0.033 1.033 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 14.079 -11.752 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.085 4.085 4 C -0.163 4.163 5 C 0.054 3.946 6 O -0.403 6.403 7 C -0.058 4.058 8 N -0.259 5.259 9 C 0.079 3.921 10 N -0.180 5.180 11 C 0.093 3.907 12 C -0.556 4.556 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.209 1.209 20 C -0.125 4.125 21 C -0.173 4.173 22 C -0.203 4.203 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.184 0.816 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.179 0.821 31 H 0.034 0.966 32 H -0.015 1.015 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.148 12.683 -11.477 17.105 hybrid contribution 0.846 0.544 1.036 1.444 sum 0.994 13.227 -10.441 16.881 Atomic orbital electron populations 1.20565 0.88579 1.02802 1.02891 1.20865 0.99047 0.91837 1.01001 1.21657 0.93382 0.98284 0.95184 1.20910 0.94932 0.96548 1.03936 1.20878 0.98250 0.91705 0.83726 1.86574 1.78149 1.48496 1.27098 1.22745 1.00430 0.87226 0.95446 1.67694 1.10264 1.33498 1.14476 1.19947 0.86603 0.92253 0.93284 1.60112 1.52704 1.02847 1.02331 1.19383 0.92727 0.91884 0.86664 1.21443 1.31266 1.09233 0.93615 0.92239 1.25872 0.96212 0.95223 1.02275 1.70097 1.42097 1.18239 1.26935 0.85404 0.78302 0.78808 0.78598 1.18673 1.19663 1.20852 1.22417 0.95204 1.01887 0.93042 1.23123 0.98717 0.99278 0.96143 1.23003 1.02602 0.91716 1.02951 0.89834 0.92386 0.90241 0.81639 0.90640 0.89901 0.74895 0.82091 0.96600 1.01526 0.92740 0.91028 0.88075 0.86413 0.87146 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.73 71.23 0.69 -2.21 16 2 C -0.12 -4.59 5.92 -19.63 -0.12 -4.71 16 3 C -0.06 -1.79 9.51 22.44 0.21 -1.58 16 4 C -0.16 -4.83 5.53 -19.76 -0.11 -4.94 16 5 C 0.13 2.60 7.19 71.24 0.51 3.11 16 6 O -0.59 -13.31 13.64 -148.98 -2.03 -15.34 16 7 C 0.10 3.63 10.85 84.64 0.92 4.55 16 8 N -0.55 -24.72 9.27 -193.26 -1.79 -26.51 16 9 C 0.31 13.66 4.95 133.04 0.66 14.31 16 10 N -0.46 -21.36 3.60 -682.25 -2.45 -23.81 16 11 C 0.22 12.53 4.67 85.55 0.40 12.93 16 12 C -0.52 -31.02 8.97 25.60 0.23 -30.79 16 13 H 0.06 3.52 7.11 -2.91 -0.02 3.49 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -58.83 13.29 21.45 0.28 -58.54 16 16 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 17 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 20 C -0.02 -0.70 5.01 44.92 0.22 -0.47 16 21 C -0.14 -4.04 10.46 30.62 0.32 -3.72 16 22 C -0.17 -5.72 9.59 30.62 0.29 -5.42 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 24 H 0.06 2.24 6.94 -2.39 -0.02 2.23 16 25 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 26 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 27 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 28 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 29 H 0.40 4.24 9.12 -74.06 -0.68 3.56 16 30 H 0.16 4.95 8.06 -2.91 -0.02 4.92 16 31 H 0.02 0.97 6.95 -2.39 -0.02 0.95 16 32 H -0.03 -2.15 7.37 -2.39 -0.02 -2.17 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.07 3.00 7.94 -2.39 -0.02 2.98 16 35 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.08 3.21 7.85 -2.39 -0.02 3.19 16 Total: -1.00 -78.03 323.00 1.12 -76.91 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.38 Total: 17.07 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.70 Total: -18.35 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.96 Total: -108.87 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -2.03 Total: -15.34 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -78.03 1.12 -76.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161905282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.781 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds