Wall clock time and date at job start Mon Mar 30 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47273 * 2 1 4 4 C 1.52999 * 109.46976 * 239.99085 * 2 1 3 5 5 C 1.50707 * 109.46999 * 65.00241 * 4 2 1 6 6 O 1.21286 * 119.99914 * 0.02562 * 5 4 2 7 7 N 1.34766 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00033 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47501 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99850 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00346 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46873 * 119.99578 * 13 11 9 16 16 H 1.48501 * 109.46955 * 239.99605 * 13 11 9 17 17 C 1.50697 * 109.46651 * 119.99742 * 2 1 3 18 18 C 1.38293 * 119.92423 * 239.99682 * 17 2 1 19 19 C 1.38103 * 120.07544 * 179.97438 * 18 17 2 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.09001 * 109.47551 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46897 * 300.01065 * 1 2 3 26 26 H 1.09003 * 109.46952 * 60.00250 * 1 2 3 27 27 H 1.08994 * 109.47153 * 185.00257 * 4 2 1 28 28 H 1.09003 * 109.47178 * 305.00653 * 4 2 1 29 29 H 0.97000 * 120.00494 * 0.02562 * 7 5 4 30 30 H 1.09004 * 109.47236 * 300.00471 * 8 7 5 31 31 H 1.09002 * 109.46968 * 59.99575 * 8 7 5 32 32 H 0.96997 * 119.99940 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.95818 * 359.97438 * 18 17 2 34 34 H 1.07999 * 120.03434 * 180.02562 * 19 18 17 35 35 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 36 36 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 37 37 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 38 38 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0567 -2.4766 6 8 1.0117 1.0872 -2.3634 7 7 1.9853 -0.3918 -3.7000 8 6 1.5982 0.3649 -4.8932 9 6 2.1003 -0.3456 -6.1236 10 1 2.6522 -1.2689 -6.0265 11 6 1.8552 0.1828 -7.3733 12 7 1.1827 1.3069 -7.4915 13 14 2.4771 -0.6984 -8.8985 14 1 3.1989 -1.9326 -8.4973 15 1 1.3268 -1.0572 -9.7664 16 1 3.4004 0.1943 -9.6441 17 6 2.0322 -0.7104 1.2305 18 6 2.8272 -0.0368 2.1398 19 6 3.2887 -0.6846 3.2688 20 6 2.9540 -2.0145 3.4903 21 7 3.4195 -2.6727 4.6308 22 6 2.1601 -2.6897 2.5719 23 6 1.6976 -2.0344 1.4478 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1262 -0.7997 -1.2055 28 1 1.6053 -1.7200 -1.2949 29 1 2.4891 -1.2157 -3.7906 30 1 0.5119 0.4433 -4.9372 31 1 2.0329 1.3635 -4.8470 32 1 1.0106 1.6788 -8.3707 33 1 3.0874 0.9970 1.9667 34 1 3.9092 -0.1578 3.9786 35 1 3.9769 -2.2012 5.2694 36 1 3.1818 -3.6002 4.7864 37 1 1.9017 -3.7250 2.7390 38 1 1.0768 -2.5577 0.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164524475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:29 Heat of formation + Delta-G solvation = -35.759443 kcal Electronic energy + Delta-G solvation = -18688.479777 eV Core-core repulsion = 15722.567071 eV Total energy + Delta-G solvation = -2965.912706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.79894 -38.71660 -35.85528 -34.14679 -33.01774 -32.28298 -30.91667 -28.63208 -27.66011 -26.41662 -23.31049 -22.83901 -22.15175 -20.19296 -19.32562 -17.38547 -17.09388 -16.77939 -15.87133 -15.21834 -14.99285 -14.85206 -14.32655 -14.03177 -13.90495 -13.46005 -13.37484 -13.01104 -12.73385 -12.62233 -12.14155 -11.89647 -11.50228 -11.21351 -11.08792 -10.94088 -10.88681 -10.69956 -10.44425 -10.35200 -10.25790 -9.34611 -8.95309 -8.86864 -8.70310 -7.80804 -7.54339 -6.14389 -4.20881 1.41434 1.56991 3.24902 3.31966 3.35192 3.47720 3.68446 3.83153 4.18848 4.41559 4.80172 4.94573 5.04154 5.18694 5.21764 5.37002 5.42812 5.53372 5.59513 5.77898 5.87109 5.90780 5.99601 6.06677 6.22200 6.26977 6.40266 6.45794 6.72055 6.82596 6.86787 7.34031 7.35833 7.51895 7.54209 7.56238 7.71081 8.00649 8.69923 8.82587 9.18848 9.46152 10.95928 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040672 B = 0.003210 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.271915 B = 8721.438494 C = 9064.915439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 H 0.082 0.918 4 C -0.134 4.134 5 C 0.497 3.503 6 O -0.555 6.555 7 N -0.715 5.715 8 C 0.249 3.751 9 C -0.542 4.542 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.126 4.126 18 C -0.068 4.068 19 C -0.197 4.197 20 C 0.204 3.796 21 N -0.883 5.883 22 C -0.197 4.197 23 C -0.066 4.066 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.390 0.610 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.395 0.605 36 H 0.395 0.605 37 H 0.116 0.884 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -8.414 21.848 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 H 0.101 0.899 4 C -0.174 4.174 5 C 0.282 3.718 6 O -0.435 6.435 7 N -0.363 5.363 8 C 0.128 3.872 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.524 5.524 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.128 4.128 18 C -0.087 4.087 19 C -0.220 4.220 20 C 0.101 3.899 21 N -0.423 5.423 22 C -0.219 4.219 23 C -0.084 4.084 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.222 0.778 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.223 0.777 36 H 0.223 0.777 37 H 0.134 0.866 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.382 -7.513 21.707 23.217 hybrid contribution 0.746 -1.063 -0.603 1.432 sum 4.128 -8.576 21.103 23.150 Atomic orbital electron populations 1.21958 0.94158 1.01313 1.03033 1.19744 0.96402 0.98901 0.89594 0.89946 1.21768 1.02466 1.00019 0.93163 1.20523 0.80242 0.86039 0.84946 1.90614 1.41006 1.25038 1.86800 1.46492 1.55674 1.27266 1.06895 1.19084 0.96167 0.91853 0.80098 1.21284 1.36781 1.09132 0.90797 0.91891 1.24961 0.94925 0.94967 0.99241 1.69987 1.39173 1.19042 1.24154 0.86371 0.78580 0.79544 0.82476 1.19634 1.20814 1.20820 1.19750 1.00911 0.94528 0.97571 1.20857 0.95516 0.99365 0.92934 1.20533 1.07119 0.93651 1.00680 1.17777 0.93114 0.91723 0.87311 1.42439 1.59957 1.15338 1.24555 1.20544 1.04559 1.00069 0.96755 1.20772 0.97579 0.93987 0.96078 0.93519 0.93278 0.90026 0.89516 0.89585 0.77780 0.95614 0.95624 0.92540 0.86104 0.86596 0.77698 0.77686 0.86577 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.75 37.16 0.33 -1.79 16 2 C -0.03 -0.38 2.21 -91.77 -0.20 -0.59 16 3 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 4 C -0.13 -1.93 4.91 -27.88 -0.14 -2.07 16 5 C 0.50 9.86 7.55 -10.99 -0.08 9.78 16 6 O -0.55 -13.02 13.97 5.55 0.08 -12.95 16 7 N -0.72 -15.20 5.55 -61.47 -0.34 -15.55 16 8 C 0.25 6.66 5.43 -5.19 -0.03 6.64 16 9 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 10 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.13 -1.54 4.78 -104.59 -0.50 -2.04 16 18 C -0.07 -0.78 9.66 -39.61 -0.38 -1.16 16 19 C -0.20 -2.02 9.90 -39.38 -0.39 -2.41 16 20 C 0.20 2.00 6.75 -83.79 -0.57 1.43 16 21 N -0.88 -5.85 9.09 32.41 0.29 -5.56 16 22 C -0.20 -2.01 9.90 -39.38 -0.39 -2.40 16 23 C -0.07 -0.74 8.75 -39.62 -0.35 -1.08 16 24 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.42 5.95 -51.93 -0.31 1.11 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.09 7.56 -51.93 -0.39 0.69 16 29 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.12 1.26 7.94 -52.49 -0.42 0.84 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 36 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 1.24 7.15 -52.48 -0.38 0.86 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -32.52 320.34 -7.95 -40.47 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.41 Total: 7.56 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.12 Total: -9.20 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.69 Total: -46.70 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.52 -7.95 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164524475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.711 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds