Wall clock time and date at job start Mon Mar 30 2020 04:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47273 * 2 1 4 4 C 1.52999 * 109.46976 * 239.99085 * 2 1 3 5 5 C 1.50707 * 109.46999 * 65.00241 * 4 2 1 6 6 O 1.21286 * 119.99914 * 0.02562 * 5 4 2 7 7 N 1.34766 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00033 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47501 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99850 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00346 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46873 * 119.99578 * 13 11 9 16 16 H 1.48501 * 109.46955 * 239.99605 * 13 11 9 17 17 C 1.50697 * 109.46651 * 119.99742 * 2 1 3 18 18 C 1.38293 * 119.92423 * 239.99682 * 17 2 1 19 19 C 1.38103 * 120.07544 * 179.97438 * 18 17 2 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.09001 * 109.47551 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46897 * 300.01065 * 1 2 3 26 26 H 1.09003 * 109.46952 * 60.00250 * 1 2 3 27 27 H 1.08994 * 109.47153 * 185.00257 * 4 2 1 28 28 H 1.09003 * 109.47178 * 305.00653 * 4 2 1 29 29 H 0.97000 * 120.00494 * 0.02562 * 7 5 4 30 30 H 1.09004 * 109.47236 * 300.00471 * 8 7 5 31 31 H 1.09002 * 109.46968 * 59.99575 * 8 7 5 32 32 H 0.96997 * 119.99940 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.95818 * 359.97438 * 18 17 2 34 34 H 1.07999 * 120.03434 * 180.02562 * 19 18 17 35 35 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 36 36 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 37 37 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 38 38 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0567 -2.4766 6 8 1.0117 1.0872 -2.3634 7 7 1.9853 -0.3918 -3.7000 8 6 1.5982 0.3649 -4.8932 9 6 2.1003 -0.3456 -6.1236 10 1 2.6522 -1.2689 -6.0265 11 6 1.8552 0.1828 -7.3733 12 7 1.1827 1.3069 -7.4915 13 14 2.4771 -0.6984 -8.8985 14 1 3.1989 -1.9326 -8.4973 15 1 1.3268 -1.0572 -9.7664 16 1 3.4004 0.1943 -9.6441 17 6 2.0322 -0.7104 1.2305 18 6 2.8272 -0.0368 2.1398 19 6 3.2887 -0.6846 3.2688 20 6 2.9540 -2.0145 3.4903 21 7 3.4195 -2.6727 4.6308 22 6 2.1601 -2.6897 2.5719 23 6 1.6976 -2.0344 1.4478 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1262 -0.7997 -1.2055 28 1 1.6053 -1.7200 -1.2949 29 1 2.4891 -1.2157 -3.7906 30 1 0.5119 0.4433 -4.9372 31 1 2.0329 1.3635 -4.8470 32 1 1.0106 1.6788 -8.3707 33 1 3.0874 0.9970 1.9667 34 1 3.9092 -0.1578 3.9786 35 1 3.9769 -2.2012 5.2694 36 1 3.1818 -3.6002 4.7864 37 1 1.9017 -3.7250 2.7390 38 1 1.0768 -2.5577 0.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164524475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:28 Heat of formation + Delta-G solvation = -58.401447 kcal Electronic energy + Delta-G solvation = -18689.461608 eV Core-core repulsion = 15722.567071 eV Total energy + Delta-G solvation = -2966.894537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92574 -40.04205 -36.88953 -36.00922 -34.32209 -33.94866 -31.69188 -30.19347 -28.66285 -28.07877 -24.83033 -23.91182 -23.34271 -21.54807 -20.70820 -18.89291 -18.03312 -17.68830 -17.37340 -17.01027 -16.45450 -16.04152 -15.95090 -15.23675 -14.84419 -14.51269 -14.45462 -14.17353 -14.10836 -13.89625 -13.78161 -13.59879 -12.95835 -12.83890 -12.70391 -12.22457 -12.15286 -12.09696 -11.83017 -11.46371 -11.43570 -11.15705 -10.80262 -10.55540 -9.75605 -9.74002 -8.28890 -8.25304 -6.44907 0.62837 0.75372 1.43416 1.44616 1.58215 1.85741 2.34245 2.66666 3.05108 3.06301 3.12266 3.85157 3.91512 4.17873 4.22723 4.26765 4.37317 4.60465 4.64890 4.72508 4.76453 4.94140 5.04264 5.08597 5.18397 5.25737 5.26686 5.32439 5.42346 5.51004 5.53483 5.66631 5.75462 5.87508 5.96596 6.08294 6.67175 6.69571 6.97862 7.08396 7.24857 7.57306 8.83979 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040672 B = 0.003210 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.271915 B = 8721.438494 C = 9064.915439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 H 0.062 0.938 4 C -0.118 4.118 5 C 0.493 3.507 6 O -0.595 6.595 7 N -0.712 5.712 8 C 0.266 3.734 9 C -0.554 4.554 10 H 0.083 0.917 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.985 3.015 14 H -0.253 1.253 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.141 4.141 18 C -0.079 4.079 19 C -0.206 4.206 20 C 0.205 3.795 21 N -0.871 5.871 22 C -0.204 4.204 23 C -0.070 4.070 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.407 0.593 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.405 0.595 36 H 0.406 0.594 37 H 0.136 0.864 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -11.257 22.993 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 H 0.080 0.920 4 C -0.158 4.158 5 C 0.281 3.719 6 O -0.477 6.477 7 N -0.362 5.362 8 C 0.143 3.857 9 C -0.592 4.592 10 H 0.101 0.899 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.808 3.192 14 H -0.176 1.176 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.143 4.143 18 C -0.097 4.097 19 C -0.229 4.229 20 C 0.100 3.900 21 N -0.411 5.411 22 C -0.227 4.227 23 C -0.088 4.088 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.243 0.757 30 H 0.004 0.996 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.234 0.766 36 H 0.235 0.765 37 H 0.153 0.847 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.882 -10.406 22.916 25.637 hybrid contribution 0.273 -0.154 -0.814 0.873 sum 5.156 -10.559 22.101 25.031 Atomic orbital electron populations 1.21886 0.94788 1.01895 1.01476 1.19615 0.95868 0.98114 0.90461 0.91979 1.21763 1.03897 1.00152 0.89965 1.21555 0.78778 0.85710 0.85817 1.90605 1.42578 1.27153 1.87412 1.46261 1.56280 1.27629 1.05986 1.18516 0.93437 0.90970 0.82804 1.21667 1.36811 1.09765 0.90983 0.89870 1.26086 0.94816 0.95630 1.03211 1.70148 1.40619 1.21024 1.25283 0.85106 0.77996 0.78673 0.77411 1.17600 1.20426 1.20470 1.19523 1.02504 0.95135 0.97165 1.20978 0.95681 0.99661 0.93424 1.20727 1.07373 0.94140 1.00631 1.17934 0.92492 0.91682 0.87924 1.42438 1.59243 1.15840 1.23618 1.20781 1.04435 1.01027 0.96429 1.20898 0.97632 0.93531 0.96754 0.91820 0.92610 0.93692 0.87331 0.86801 0.75717 0.99561 0.99664 0.92280 0.86030 0.84974 0.76588 0.76507 0.84659 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.75 71.98 0.63 -3.50 16 2 C -0.02 -0.59 2.21 -11.54 -0.03 -0.62 16 3 H 0.06 1.94 7.68 -2.39 -0.02 1.92 16 4 C -0.12 -3.26 4.91 29.85 0.15 -3.12 16 5 C 0.49 19.92 7.55 87.66 0.66 20.58 16 6 O -0.60 -29.43 13.97 -3.05 -0.04 -29.47 16 7 N -0.71 -30.65 5.55 -466.79 -2.59 -33.24 16 8 C 0.27 14.86 5.43 85.63 0.46 15.33 16 9 C -0.55 -30.60 9.28 25.60 0.24 -30.36 16 10 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 11 C 0.00 0.11 5.46 84.65 0.46 0.57 16 12 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 13 Si 0.99 42.75 29.54 68.60 2.03 44.77 16 14 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 C -0.14 -3.25 4.78 -19.84 -0.09 -3.34 16 18 C -0.08 -1.71 9.66 22.25 0.21 -1.49 16 19 C -0.21 -3.79 9.90 22.40 0.22 -3.57 16 20 C 0.21 3.44 6.75 38.22 0.26 3.70 16 21 N -0.87 -8.77 9.09 -51.37 -0.47 -9.24 16 22 C -0.20 -3.56 9.90 22.40 0.22 -3.34 16 23 C -0.07 -1.39 8.75 22.25 0.19 -1.20 16 24 H 0.06 1.57 7.38 -2.39 -0.02 1.56 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.63 5.95 -2.39 -0.01 1.61 16 27 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.11 2.57 7.56 -2.39 -0.02 2.55 16 29 H 0.41 14.50 8.32 -92.71 -0.77 13.73 16 30 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 33 H 0.12 2.49 7.94 -2.91 -0.02 2.47 16 34 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.40 2.74 8.84 -92.71 -0.82 1.92 16 36 H 0.41 2.66 8.84 -92.70 -0.82 1.84 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.13 2.28 7.15 -2.91 -0.02 2.26 16 Total: -1.00 -73.11 320.34 1.49 -71.62 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -1.32 Total: 22.60 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.59 Total: -10.36 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -2.77 Total: -99.16 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.04 Total: -29.47 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.11 1.49 -71.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164524475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.219 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds