Wall clock time and date at job start Mon Mar 30 2020 04:51:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47034 * 2 1
4 4 C 1.50696 * 109.47176 * 240.00084 * 2 1 3
5 5 H 1.08001 * 120.00127 * 245.43434 * 4 2 1
6 6 C 1.37876 * 119.99862 * 65.43748 * 4 2 1
7 7 N 1.31512 * 120.00171 * 6.13055 * 6 4 2
8 8 Si 1.86804 * 119.99814 * 186.13030 * 6 4 2
9 9 H 1.48499 * 109.47371 * 94.99423 * 8 6 4
10 10 H 1.48501 * 109.46922 * 214.99571 * 8 6 4
11 11 H 1.48500 * 109.47127 * 334.98943 * 8 6 4
12 12 N 1.46494 * 109.47080 * 119.99942 * 2 1 3
13 13 C 1.46502 * 120.00171 * 53.94324 * 12 2 1
14 14 C 1.34780 * 120.00143 * 233.94070 * 12 2 1
15 15 O 1.21282 * 120.00016 * 183.61160 * 14 12 2
16 16 C 1.50704 * 119.99900 * 3.33616 * 14 12 2
17 17 H 1.08994 * 109.47137 * 305.36488 * 16 14 12
18 18 C 1.53001 * 109.46728 * 65.36349 * 16 14 12
19 19 C 1.50698 * 109.47299 * 185.36282 * 16 14 12
20 20 C 1.38671 * 120.41872 * 119.71727 * 19 16 14
21 21 C 1.38624 * 118.42111 * 179.78318 * 20 19 16
22 22 C 1.38227 * 119.16084 * 0.51784 * 21 20 19
23 23 N 1.31854 * 120.76368 * 359.72713 * 22 21 20
24 24 C 1.31884 * 121.72355 * 359.97438 * 23 22 21
25 25 H 1.09004 * 109.47532 * 64.25032 * 1 2 3
26 26 H 1.09005 * 109.47001 * 184.25148 * 1 2 3
27 27 H 1.09005 * 109.47072 * 304.24747 * 1 2 3
28 28 H 0.97009 * 119.99707 * 180.02562 * 7 6 4
29 29 H 1.09000 * 109.46869 * 274.50760 * 13 12 2
30 30 H 1.08993 * 109.47043 * 34.51001 * 13 12 2
31 31 H 1.08998 * 109.46986 * 154.51015 * 13 12 2
32 32 H 1.09006 * 109.46509 * 183.93356 * 18 16 14
33 33 H 1.09002 * 109.47466 * 303.93206 * 18 16 14
34 34 H 1.09000 * 109.47278 * 63.93709 * 18 16 14
35 35 H 1.08001 * 120.78960 * 0.02858 * 20 19 16
36 36 H 1.08003 * 120.41832 * 180.22319 * 21 20 19
37 37 H 1.08005 * 119.61789 * 179.70027 * 22 21 20
38 38 H 1.08006 * 119.61686 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.5789 -1.6368 -1.1338
6 6 1.7941 -0.1775 -2.4796
7 7 1.2360 1.0078 -2.5934
8 14 2.2642 -1.1394 -4.0104
9 1 1.0855 -1.8988 -4.4993
10 1 2.7195 -0.1989 -5.0655
11 1 3.3615 -2.0850 -3.6833
12 7 2.0183 -0.6906 1.1961
13 6 1.5584 -2.0486 1.4970
14 6 2.8907 -0.0766 2.0199
15 8 3.3453 -0.6715 2.9740
16 6 3.3060 1.3471 1.7518
17 1 3.6932 1.4275 0.7361
18 6 2.0958 2.2698 1.9107
19 6 4.3776 1.7508 2.7314
20 6 5.6300 2.1400 2.2811
21 6 6.5833 2.5074 3.2181
22 6 6.2595 2.4634 4.5612
23 7 5.0595 2.0831 4.9535
24 6 4.1263 1.7325 4.0900
25 1 -0.3634 0.4465 -0.9256
26 1 -0.3633 -1.0249 0.0762
27 1 -0.3633 0.5784 0.8495
28 1 1.0682 1.3825 -3.4723
29 1 0.6178 -2.0005 2.0456
30 1 1.4087 -2.5960 0.5665
31 1 2.3066 -2.5597 2.1028
32 1 2.3795 3.2892 1.6490
33 1 1.2947 1.9351 1.2517
34 1 1.7514 2.2425 2.9444
35 1 5.8561 2.1603 1.2252
36 1 7.5680 2.8194 2.9029
37 1 6.9981 2.7434 5.2978
38 1 3.1545 1.4269 4.4491
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000174616800.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:26
Heat of formation + Delta-G solvation = -3.311170 kcal
Electronic energy + Delta-G solvation = -20156.842446 eV
Core-core repulsion = 17192.336803 eV
Total energy + Delta-G solvation = -2964.505644 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.33224 -38.94584 -35.64397 -34.24807 -32.67855 -31.91108 -29.66504 -29.25827
-26.48170 -25.30593 -24.38234 -23.29490 -22.02399 -21.07681 -18.26369 -16.95776
-16.71296 -16.65642 -15.61724 -15.41309 -14.63477 -14.47111 -14.21118 -13.74296
-13.45720 -13.11796 -12.92695 -12.82347 -12.51223 -12.14400 -11.81344 -11.76992
-11.36589 -11.10717 -11.09285 -10.98631 -10.95585 -10.72543 -10.42145 -10.17240
-9.62734 -9.40710 -9.20727 -8.98951 -8.69040 -8.56236 -7.69037 -6.25188
-4.31281 1.35147 1.51903 3.17807 3.26049 3.27893 3.35066 3.84834
4.14013 4.29272 4.63236 4.96503 4.98784 5.07384 5.18308 5.25323
5.36536 5.53655 5.60440 5.79496 5.95195 6.09057 6.13907 6.17709
6.20557 6.31045 6.38402 6.44306 6.50627 6.62527 6.63547 6.79049
6.92556 7.12473 7.28675 7.60702 7.74851 8.03412 8.20423 8.36428
8.71821 8.95911 9.36443 10.80920
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.024576 B = 0.005827 C = 0.005384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1139.046394 B = 4804.022856 C = 5199.173838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.243 3.757
3 H 0.070 0.930
4 C -0.532 4.532
5 H 0.061 0.939
6 C 0.069 3.931
7 N -0.887 5.887
8 Si 0.895 3.105
9 H -0.279 1.279
10 H -0.285 1.285
11 H -0.274 1.274
12 N -0.589 5.589
13 C 0.091 3.909
14 C 0.517 3.483
15 O -0.569 6.569
16 C -0.067 4.067
17 H 0.112 0.888
18 C -0.148 4.148
19 C -0.105 4.105
20 C -0.071 4.071
21 C -0.179 4.179
22 C 0.086 3.914
23 N -0.491 5.491
24 C 0.134 3.866
25 H 0.081 0.919
26 H 0.035 0.965
27 H 0.018 0.982
28 H 0.265 0.735
29 H 0.041 0.959
30 H 0.072 0.928
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.087 0.913
34 H 0.055 0.945
35 H 0.134 0.866
36 H 0.131 0.869
37 H 0.150 0.850
38 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.852 3.625 6.486 8.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.143 3.857
3 H 0.087 0.913
4 C -0.571 4.571
5 H 0.079 0.921
6 C -0.134 4.134
7 N -0.525 5.525
8 Si 0.722 3.278
9 H -0.205 1.205
10 H -0.211 1.211
11 H -0.198 1.198
12 N -0.319 5.319
13 C -0.052 4.052
14 C 0.304 3.696
15 O -0.450 6.450
16 C -0.089 4.089
17 H 0.129 0.871
18 C -0.205 4.205
19 C -0.107 4.107
20 C -0.097 4.097
21 C -0.198 4.198
22 C -0.071 4.071
23 N -0.199 5.199
24 C -0.023 4.023
25 H 0.099 0.901
26 H 0.054 0.946
27 H 0.037 0.963
28 H 0.075 0.925
29 H 0.060 0.940
30 H 0.091 0.909
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.106 0.894
34 H 0.074 0.926
35 H 0.152 0.848
36 H 0.149 0.851
37 H 0.167 0.833
38 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 3.808 3.417 7.709 9.252
hybrid contribution 0.399 -0.555 -2.090 2.199
sum 4.207 2.862 5.619 7.580
Atomic orbital electron populations
1.22064 0.98192 0.99457 1.00786 1.19280 0.91347 0.94267 0.80823
0.91264 1.21368 1.36345 1.09016 0.90336 0.92062 1.24875 0.94857
0.94726 0.98974 1.69906 1.42930 1.15343 1.24312 0.86526 0.78841
0.79905 0.82486 1.20524 1.21077 1.19844 1.48180 1.43112 1.15410
1.25211 1.21416 0.98475 0.84247 1.01070 1.20236 0.78911 0.88069
0.82387 1.90618 1.56397 1.67006 1.31028 1.20176 0.95355 0.93494
0.99834 0.87050 1.22007 0.97022 0.98860 1.02593 1.20503 0.95170
0.99397 0.95634 1.21533 0.92263 0.95474 1.00429 1.22030 1.00416
1.02907 0.94491 1.22669 0.93790 0.96253 0.94371 1.67686 1.01786
1.11070 1.39371 1.22499 0.98130 0.92833 0.88866 0.90070 0.94575
0.96288 0.92519 0.94023 0.90950 0.91853 0.91725 0.89447 0.92622
0.84812 0.85137 0.83298 0.83208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.08 8.79 37.16 0.33 -2.75 16
2 C 0.24 5.37 1.55 -69.09 -0.11 5.27 16
3 H 0.07 1.57 4.24 -51.93 -0.22 1.35 16
4 C -0.53 -13.17 8.11 -34.44 -0.28 -13.45 16
5 H 0.06 1.56 7.51 -52.49 -0.39 1.17 16
6 C 0.07 1.72 5.22 -17.82 -0.09 1.63 16
7 N -0.89 -22.69 11.99 55.43 0.66 -22.03 16
8 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16
9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
12 N -0.59 -12.19 2.75 -175.27 -0.48 -12.67 16
13 C 0.09 1.71 9.25 59.85 0.55 2.27 16
14 C 0.52 10.54 6.90 -10.98 -0.08 10.46 16
15 O -0.57 -12.75 14.44 5.56 0.08 -12.67 16
16 C -0.07 -1.17 2.07 -92.92 -0.19 -1.36 16
17 H 0.11 2.03 7.26 -51.93 -0.38 1.65 16
18 C -0.15 -2.32 8.59 37.16 0.32 -2.00 16
19 C -0.10 -1.74 4.45 -104.48 -0.47 -2.20 16
20 C -0.07 -1.04 9.81 -39.28 -0.39 -1.42 16
21 C -0.18 -2.28 10.11 -39.44 -0.40 -2.68 16
22 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16
23 N -0.49 -8.08 10.36 -13.25 -0.14 -8.22 16
24 C 0.13 2.27 9.02 -17.55 -0.16 2.12 16
25 H 0.08 1.87 6.68 -51.93 -0.35 1.52 16
26 H 0.04 0.73 7.38 -51.93 -0.38 0.34 16
27 H 0.02 0.35 7.59 -51.93 -0.39 -0.04 16
28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16
29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.07 1.35 7.33 -51.93 -0.38 0.97 16
31 H 0.06 1.19 7.25 -51.93 -0.38 0.81 16
32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.09 1.51 4.73 -51.93 -0.25 1.26 16
34 H 0.05 0.81 7.28 -51.93 -0.38 0.43 16
35 H 0.13 1.73 8.00 -52.49 -0.42 1.31 16
36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16
37 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16
38 H 0.15 2.53 7.39 -52.48 -0.39 2.15 16
LS Contribution 308.82 15.07 4.65 4.65
Total: -1.00 -28.36 308.82 -6.52 -34.89
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -5.13 Total: 4.45 kcal
Atomic # 6 Polarization: -2.02 SS G_CDS: -1.15 Total: -3.17 kcal
Atomic # 7 Polarization: -42.96 SS G_CDS: 0.05 Total: -42.91 kcal
Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal
Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -28.36 -6.52 -34.89 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174616800.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal
(2) G-P(sol) polarization free energy of solvation -28.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds