Wall clock time and date at job start Mon Mar 30 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47176 * 240.00084 * 2 1 3 5 5 H 1.08001 * 120.00127 * 245.43434 * 4 2 1 6 6 C 1.37876 * 119.99862 * 65.43748 * 4 2 1 7 7 N 1.31512 * 120.00171 * 6.13055 * 6 4 2 8 8 Si 1.86804 * 119.99814 * 186.13030 * 6 4 2 9 9 H 1.48499 * 109.47371 * 94.99423 * 8 6 4 10 10 H 1.48501 * 109.46922 * 214.99571 * 8 6 4 11 11 H 1.48500 * 109.47127 * 334.98943 * 8 6 4 12 12 N 1.46494 * 109.47080 * 119.99942 * 2 1 3 13 13 C 1.46502 * 120.00171 * 53.94324 * 12 2 1 14 14 C 1.34780 * 120.00143 * 233.94070 * 12 2 1 15 15 O 1.21282 * 120.00016 * 183.61160 * 14 12 2 16 16 C 1.50704 * 119.99900 * 3.33616 * 14 12 2 17 17 H 1.08994 * 109.47137 * 305.36488 * 16 14 12 18 18 C 1.53001 * 109.46728 * 65.36349 * 16 14 12 19 19 C 1.50698 * 109.47299 * 185.36282 * 16 14 12 20 20 C 1.38671 * 120.41872 * 119.71727 * 19 16 14 21 21 C 1.38624 * 118.42111 * 179.78318 * 20 19 16 22 22 C 1.38227 * 119.16084 * 0.51784 * 21 20 19 23 23 N 1.31854 * 120.76368 * 359.72713 * 22 21 20 24 24 C 1.31884 * 121.72355 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47532 * 64.25032 * 1 2 3 26 26 H 1.09005 * 109.47001 * 184.25148 * 1 2 3 27 27 H 1.09005 * 109.47072 * 304.24747 * 1 2 3 28 28 H 0.97009 * 119.99707 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46869 * 274.50760 * 13 12 2 30 30 H 1.08993 * 109.47043 * 34.51001 * 13 12 2 31 31 H 1.08998 * 109.46986 * 154.51015 * 13 12 2 32 32 H 1.09006 * 109.46509 * 183.93356 * 18 16 14 33 33 H 1.09002 * 109.47466 * 303.93206 * 18 16 14 34 34 H 1.09000 * 109.47278 * 63.93709 * 18 16 14 35 35 H 1.08001 * 120.78960 * 0.02858 * 20 19 16 36 36 H 1.08003 * 120.41832 * 180.22319 * 21 20 19 37 37 H 1.08005 * 119.61789 * 179.70027 * 22 21 20 38 38 H 1.08006 * 119.61686 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5789 -1.6368 -1.1338 6 6 1.7941 -0.1775 -2.4796 7 7 1.2360 1.0078 -2.5934 8 14 2.2642 -1.1394 -4.0104 9 1 1.0855 -1.8988 -4.4993 10 1 2.7195 -0.1989 -5.0655 11 1 3.3615 -2.0850 -3.6833 12 7 2.0183 -0.6906 1.1961 13 6 1.5584 -2.0486 1.4970 14 6 2.8907 -0.0766 2.0199 15 8 3.3453 -0.6715 2.9740 16 6 3.3060 1.3471 1.7518 17 1 3.6932 1.4275 0.7361 18 6 2.0958 2.2698 1.9107 19 6 4.3776 1.7508 2.7314 20 6 5.6300 2.1400 2.2811 21 6 6.5833 2.5074 3.2181 22 6 6.2595 2.4634 4.5612 23 7 5.0595 2.0831 4.9535 24 6 4.1263 1.7325 4.0900 25 1 -0.3634 0.4465 -0.9256 26 1 -0.3633 -1.0249 0.0762 27 1 -0.3633 0.5784 0.8495 28 1 1.0682 1.3825 -3.4723 29 1 0.6178 -2.0005 2.0456 30 1 1.4087 -2.5960 0.5665 31 1 2.3066 -2.5597 2.1028 32 1 2.3795 3.2892 1.6490 33 1 1.2947 1.9351 1.2517 34 1 1.7514 2.2425 2.9444 35 1 5.8561 2.1603 1.2252 36 1 7.5680 2.8194 2.9029 37 1 6.9981 2.7434 5.2978 38 1 3.1545 1.4269 4.4491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174616800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:26 Heat of formation + Delta-G solvation = -3.311170 kcal Electronic energy + Delta-G solvation = -20156.842446 eV Core-core repulsion = 17192.336803 eV Total energy + Delta-G solvation = -2964.505644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33224 -38.94584 -35.64397 -34.24807 -32.67855 -31.91108 -29.66504 -29.25827 -26.48170 -25.30593 -24.38234 -23.29490 -22.02399 -21.07681 -18.26369 -16.95776 -16.71296 -16.65642 -15.61724 -15.41309 -14.63477 -14.47111 -14.21118 -13.74296 -13.45720 -13.11796 -12.92695 -12.82347 -12.51223 -12.14400 -11.81344 -11.76992 -11.36589 -11.10717 -11.09285 -10.98631 -10.95585 -10.72543 -10.42145 -10.17240 -9.62734 -9.40710 -9.20727 -8.98951 -8.69040 -8.56236 -7.69037 -6.25188 -4.31281 1.35147 1.51903 3.17807 3.26049 3.27893 3.35066 3.84834 4.14013 4.29272 4.63236 4.96503 4.98784 5.07384 5.18308 5.25323 5.36536 5.53655 5.60440 5.79496 5.95195 6.09057 6.13907 6.17709 6.20557 6.31045 6.38402 6.44306 6.50627 6.62527 6.63547 6.79049 6.92556 7.12473 7.28675 7.60702 7.74851 8.03412 8.20423 8.36428 8.71821 8.95911 9.36443 10.80920 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.005827 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.046394 B = 4804.022856 C = 5199.173838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.243 3.757 3 H 0.070 0.930 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.091 3.909 14 C 0.517 3.483 15 O -0.569 6.569 16 C -0.067 4.067 17 H 0.112 0.888 18 C -0.148 4.148 19 C -0.105 4.105 20 C -0.071 4.071 21 C -0.179 4.179 22 C 0.086 3.914 23 N -0.491 5.491 24 C 0.134 3.866 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 3.625 6.486 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.319 5.319 13 C -0.052 4.052 14 C 0.304 3.696 15 O -0.450 6.450 16 C -0.089 4.089 17 H 0.129 0.871 18 C -0.205 4.205 19 C -0.107 4.107 20 C -0.097 4.097 21 C -0.198 4.198 22 C -0.071 4.071 23 N -0.199 5.199 24 C -0.023 4.023 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.808 3.417 7.709 9.252 hybrid contribution 0.399 -0.555 -2.090 2.199 sum 4.207 2.862 5.619 7.580 Atomic orbital electron populations 1.22064 0.98192 0.99457 1.00786 1.19280 0.91347 0.94267 0.80823 0.91264 1.21368 1.36345 1.09016 0.90336 0.92062 1.24875 0.94857 0.94726 0.98974 1.69906 1.42930 1.15343 1.24312 0.86526 0.78841 0.79905 0.82486 1.20524 1.21077 1.19844 1.48180 1.43112 1.15410 1.25211 1.21416 0.98475 0.84247 1.01070 1.20236 0.78911 0.88069 0.82387 1.90618 1.56397 1.67006 1.31028 1.20176 0.95355 0.93494 0.99834 0.87050 1.22007 0.97022 0.98860 1.02593 1.20503 0.95170 0.99397 0.95634 1.21533 0.92263 0.95474 1.00429 1.22030 1.00416 1.02907 0.94491 1.22669 0.93790 0.96253 0.94371 1.67686 1.01786 1.11070 1.39371 1.22499 0.98130 0.92833 0.88866 0.90070 0.94575 0.96288 0.92519 0.94023 0.90950 0.91853 0.91725 0.89447 0.92622 0.84812 0.85137 0.83298 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.79 37.16 0.33 -2.75 16 2 C 0.24 5.37 1.55 -69.09 -0.11 5.27 16 3 H 0.07 1.57 4.24 -51.93 -0.22 1.35 16 4 C -0.53 -13.17 8.11 -34.44 -0.28 -13.45 16 5 H 0.06 1.56 7.51 -52.49 -0.39 1.17 16 6 C 0.07 1.72 5.22 -17.82 -0.09 1.63 16 7 N -0.89 -22.69 11.99 55.43 0.66 -22.03 16 8 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.59 -12.19 2.75 -175.27 -0.48 -12.67 16 13 C 0.09 1.71 9.25 59.85 0.55 2.27 16 14 C 0.52 10.54 6.90 -10.98 -0.08 10.46 16 15 O -0.57 -12.75 14.44 5.56 0.08 -12.67 16 16 C -0.07 -1.17 2.07 -92.92 -0.19 -1.36 16 17 H 0.11 2.03 7.26 -51.93 -0.38 1.65 16 18 C -0.15 -2.32 8.59 37.16 0.32 -2.00 16 19 C -0.10 -1.74 4.45 -104.48 -0.47 -2.20 16 20 C -0.07 -1.04 9.81 -39.28 -0.39 -1.42 16 21 C -0.18 -2.28 10.11 -39.44 -0.40 -2.68 16 22 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16 23 N -0.49 -8.08 10.36 -13.25 -0.14 -8.22 16 24 C 0.13 2.27 9.02 -17.55 -0.16 2.12 16 25 H 0.08 1.87 6.68 -51.93 -0.35 1.52 16 26 H 0.04 0.73 7.38 -51.93 -0.38 0.34 16 27 H 0.02 0.35 7.59 -51.93 -0.39 -0.04 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.35 7.33 -51.93 -0.38 0.97 16 31 H 0.06 1.19 7.25 -51.93 -0.38 0.81 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.51 4.73 -51.93 -0.25 1.26 16 34 H 0.05 0.81 7.28 -51.93 -0.38 0.43 16 35 H 0.13 1.73 8.00 -52.49 -0.42 1.31 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.15 2.53 7.39 -52.48 -0.39 2.15 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -28.36 308.82 -6.52 -34.89 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.13 Total: 4.45 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.15 Total: -3.17 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.05 Total: -42.91 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.36 -6.52 -34.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174616800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds