Wall clock time and date at job start Mon Mar 30 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47176 * 240.00084 * 2 1 3 5 5 H 1.08001 * 120.00127 * 245.43434 * 4 2 1 6 6 C 1.37876 * 119.99862 * 65.43748 * 4 2 1 7 7 N 1.31512 * 120.00171 * 6.13055 * 6 4 2 8 8 Si 1.86804 * 119.99814 * 186.13030 * 6 4 2 9 9 H 1.48499 * 109.47371 * 94.99423 * 8 6 4 10 10 H 1.48501 * 109.46922 * 214.99571 * 8 6 4 11 11 H 1.48500 * 109.47127 * 334.98943 * 8 6 4 12 12 N 1.46494 * 109.47080 * 119.99942 * 2 1 3 13 13 C 1.46502 * 120.00171 * 53.94324 * 12 2 1 14 14 C 1.34780 * 120.00143 * 233.94070 * 12 2 1 15 15 O 1.21282 * 120.00016 * 183.61160 * 14 12 2 16 16 C 1.50704 * 119.99900 * 3.33616 * 14 12 2 17 17 H 1.08994 * 109.47137 * 305.36488 * 16 14 12 18 18 C 1.53001 * 109.46728 * 65.36349 * 16 14 12 19 19 C 1.50698 * 109.47299 * 185.36282 * 16 14 12 20 20 C 1.38671 * 120.41872 * 119.71727 * 19 16 14 21 21 C 1.38624 * 118.42111 * 179.78318 * 20 19 16 22 22 C 1.38227 * 119.16084 * 0.51784 * 21 20 19 23 23 N 1.31854 * 120.76368 * 359.72713 * 22 21 20 24 24 C 1.31884 * 121.72355 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47532 * 64.25032 * 1 2 3 26 26 H 1.09005 * 109.47001 * 184.25148 * 1 2 3 27 27 H 1.09005 * 109.47072 * 304.24747 * 1 2 3 28 28 H 0.97009 * 119.99707 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46869 * 274.50760 * 13 12 2 30 30 H 1.08993 * 109.47043 * 34.51001 * 13 12 2 31 31 H 1.08998 * 109.46986 * 154.51015 * 13 12 2 32 32 H 1.09006 * 109.46509 * 183.93356 * 18 16 14 33 33 H 1.09002 * 109.47466 * 303.93206 * 18 16 14 34 34 H 1.09000 * 109.47278 * 63.93709 * 18 16 14 35 35 H 1.08001 * 120.78960 * 0.02858 * 20 19 16 36 36 H 1.08003 * 120.41832 * 180.22319 * 21 20 19 37 37 H 1.08005 * 119.61789 * 179.70027 * 22 21 20 38 38 H 1.08006 * 119.61686 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5789 -1.6368 -1.1338 6 6 1.7941 -0.1775 -2.4796 7 7 1.2360 1.0078 -2.5934 8 14 2.2642 -1.1394 -4.0104 9 1 1.0855 -1.8988 -4.4993 10 1 2.7195 -0.1989 -5.0655 11 1 3.3615 -2.0850 -3.6833 12 7 2.0183 -0.6906 1.1961 13 6 1.5584 -2.0486 1.4970 14 6 2.8907 -0.0766 2.0199 15 8 3.3453 -0.6715 2.9740 16 6 3.3060 1.3471 1.7518 17 1 3.6932 1.4275 0.7361 18 6 2.0958 2.2698 1.9107 19 6 4.3776 1.7508 2.7314 20 6 5.6300 2.1400 2.2811 21 6 6.5833 2.5074 3.2181 22 6 6.2595 2.4634 4.5612 23 7 5.0595 2.0831 4.9535 24 6 4.1263 1.7325 4.0900 25 1 -0.3634 0.4465 -0.9256 26 1 -0.3633 -1.0249 0.0762 27 1 -0.3633 0.5784 0.8495 28 1 1.0682 1.3825 -3.4723 29 1 0.6178 -2.0005 2.0456 30 1 1.4087 -2.5960 0.5665 31 1 2.3066 -2.5597 2.1028 32 1 2.3795 3.2892 1.6490 33 1 1.2947 1.9351 1.2517 34 1 1.7514 2.2425 2.9444 35 1 5.8561 2.1603 1.2252 36 1 7.5680 2.8194 2.9029 37 1 6.9981 2.7434 5.2978 38 1 3.1545 1.4269 4.4491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174616800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:26 Heat of formation + Delta-G solvation = -19.190281 kcal Electronic energy + Delta-G solvation = -20157.531016 eV Core-core repulsion = 17192.336803 eV Total energy + Delta-G solvation = -2965.194214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.65806 -40.36854 -37.35768 -35.57865 -34.52864 -33.03675 -31.11826 -30.77246 -28.00259 -27.17443 -25.66585 -24.44971 -23.52064 -22.58259 -19.81144 -18.58899 -18.21778 -17.93413 -17.05927 -16.93867 -16.23221 -16.06269 -15.55098 -15.11179 -14.88366 -14.48573 -14.37344 -14.01687 -13.93337 -13.72550 -13.33947 -13.21524 -12.99647 -12.84263 -12.75362 -12.50804 -12.37643 -12.24116 -12.19141 -11.91872 -11.21126 -10.84263 -10.56348 -10.41659 -10.36001 -9.85713 -9.37976 -8.15491 -6.26819 0.21604 0.38455 1.41955 1.46240 1.53306 1.73510 2.32222 2.47664 2.94348 3.14697 3.47964 3.66941 3.77266 4.01132 4.09887 4.16387 4.28253 4.41855 4.54609 4.67571 4.68086 4.70049 4.82355 4.88585 4.92400 4.94847 4.99054 5.04369 5.16915 5.21900 5.39172 5.45159 5.54487 5.72944 5.82882 5.98674 6.19615 6.63565 6.86217 7.06372 7.30473 7.45616 8.89065 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.005827 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.046394 B = 4804.022856 C = 5199.173838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.249 3.751 3 H 0.065 0.935 4 C -0.545 4.545 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.090 3.910 14 C 0.512 3.488 15 O -0.592 6.592 16 C -0.059 4.059 17 H 0.102 0.898 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.081 4.081 21 C -0.166 4.166 22 C 0.082 3.918 23 N -0.514 5.514 24 C 0.117 3.883 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.185 0.815 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 4.237 6.524 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.148 3.852 3 H 0.083 0.917 4 C -0.583 4.583 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.544 5.544 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.052 4.052 14 C 0.300 3.700 15 O -0.475 6.475 16 C -0.081 4.081 17 H 0.120 0.880 18 C -0.197 4.197 19 C -0.124 4.124 20 C -0.107 4.107 21 C -0.185 4.185 22 C -0.074 4.074 23 N -0.223 5.223 24 C -0.040 4.040 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.188 0.812 37 H 0.202 0.798 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.949 4.023 7.746 10.034 hybrid contribution 0.116 -0.743 -2.052 2.186 sum 5.065 3.280 5.694 8.297 Atomic orbital electron populations 1.21909 0.97347 0.99803 1.00441 1.19123 0.91868 0.93818 0.80435 0.91741 1.21550 1.36396 1.08703 0.91684 0.93411 1.25420 0.94973 0.95397 1.01015 1.69975 1.43489 1.16091 1.24812 0.85719 0.78373 0.78725 0.79843 1.20204 1.20774 1.20248 1.48238 1.43295 1.16016 1.24899 1.21479 0.99175 0.83496 1.01096 1.20741 0.78299 0.89102 0.81832 1.90596 1.57088 1.67844 1.31928 1.20092 0.96421 0.91977 0.99578 0.88017 1.21939 0.95811 0.99273 1.02708 1.20459 0.95870 1.00900 0.95207 1.21843 0.91886 0.95223 1.01752 1.22441 1.01493 1.00914 0.93694 1.23338 0.93344 0.94886 0.95853 1.67683 1.02907 1.11959 1.39730 1.22375 0.98269 0.94093 0.89230 0.92102 0.94167 0.94490 0.92416 0.92244 0.91180 0.92154 0.90053 0.91010 0.91810 0.83435 0.81218 0.79786 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.79 71.98 0.63 -5.05 16 2 C 0.25 10.98 1.55 44.24 0.07 11.05 16 3 H 0.07 2.93 4.24 -2.39 -0.01 2.92 16 4 C -0.54 -26.99 8.11 25.60 0.21 -26.79 16 5 H 0.05 2.45 7.51 -2.91 -0.02 2.43 16 6 C 0.03 1.65 5.22 84.65 0.44 2.09 16 7 N -0.91 -46.08 11.99 21.45 0.26 -45.82 16 8 Si 0.95 40.28 29.54 68.60 2.03 42.30 16 9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -24.62 2.75 -826.82 -2.28 -26.89 16 13 C 0.09 3.38 9.25 127.77 1.18 4.56 16 14 C 0.51 20.97 6.90 87.66 0.61 21.58 16 15 O -0.59 -26.74 14.44 -3.04 -0.04 -26.79 16 16 C -0.06 -2.06 2.07 -12.28 -0.03 -2.09 16 17 H 0.10 3.73 7.26 -2.39 -0.02 3.71 16 18 C -0.14 -4.36 8.59 71.98 0.62 -3.75 16 19 C -0.12 -3.98 4.45 -19.78 -0.09 -4.07 16 20 C -0.08 -2.22 9.81 22.47 0.22 -2.00 16 21 C -0.17 -3.71 10.11 22.36 0.23 -3.49 16 22 C 0.08 2.02 11.18 84.69 0.95 2.97 16 23 N -0.51 -16.35 10.36 -195.84 -2.03 -18.38 16 24 C 0.12 3.95 9.02 84.67 0.76 4.71 16 25 H 0.06 2.79 6.68 -2.38 -0.02 2.77 16 26 H 0.04 1.59 7.38 -2.38 -0.02 1.57 16 27 H 0.04 1.37 7.59 -2.38 -0.02 1.35 16 28 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.62 7.33 -2.39 -0.02 2.60 16 31 H 0.06 2.27 7.25 -2.39 -0.02 2.25 16 32 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.07 2.46 4.73 -2.39 -0.01 2.44 16 34 H 0.06 1.85 7.28 -2.39 -0.02 1.83 16 35 H 0.15 3.53 8.00 -2.91 -0.02 3.51 16 36 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.14 4.81 7.39 -2.91 -0.02 4.79 16 Total: -1.00 -59.76 308.82 4.79 -54.97 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.06 Total: 20.88 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.80 Total: -0.28 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -4.05 Total: -91.09 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.79 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -59.76 4.79 -54.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174616800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.782 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds