Wall clock time and date at job start Mon Mar 30 2020 04:51:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47034 * 2 1
4 4 C 1.50696 * 109.47176 * 240.00084 * 2 1 3
5 5 H 1.08001 * 120.00127 * 245.43434 * 4 2 1
6 6 C 1.37876 * 119.99862 * 65.43748 * 4 2 1
7 7 N 1.31512 * 120.00171 * 6.13055 * 6 4 2
8 8 Si 1.86804 * 119.99814 * 186.13030 * 6 4 2
9 9 H 1.48499 * 109.47371 * 94.99423 * 8 6 4
10 10 H 1.48501 * 109.46922 * 214.99571 * 8 6 4
11 11 H 1.48500 * 109.47127 * 334.98943 * 8 6 4
12 12 N 1.46494 * 109.47080 * 119.99942 * 2 1 3
13 13 C 1.46502 * 120.00171 * 53.94324 * 12 2 1
14 14 C 1.34780 * 120.00143 * 233.94070 * 12 2 1
15 15 O 1.21282 * 120.00016 * 183.61160 * 14 12 2
16 16 C 1.50704 * 119.99900 * 3.33616 * 14 12 2
17 17 H 1.08994 * 109.47137 * 305.36488 * 16 14 12
18 18 C 1.53001 * 109.46728 * 65.36349 * 16 14 12
19 19 C 1.50698 * 109.47299 * 185.36282 * 16 14 12
20 20 C 1.38671 * 120.41872 * 119.71727 * 19 16 14
21 21 C 1.38624 * 118.42111 * 179.78318 * 20 19 16
22 22 C 1.38227 * 119.16084 * 0.51784 * 21 20 19
23 23 N 1.31854 * 120.76368 * 359.72713 * 22 21 20
24 24 C 1.31884 * 121.72355 * 359.97438 * 23 22 21
25 25 H 1.09004 * 109.47532 * 64.25032 * 1 2 3
26 26 H 1.09005 * 109.47001 * 184.25148 * 1 2 3
27 27 H 1.09005 * 109.47072 * 304.24747 * 1 2 3
28 28 H 0.97009 * 119.99707 * 180.02562 * 7 6 4
29 29 H 1.09000 * 109.46869 * 274.50760 * 13 12 2
30 30 H 1.08993 * 109.47043 * 34.51001 * 13 12 2
31 31 H 1.08998 * 109.46986 * 154.51015 * 13 12 2
32 32 H 1.09006 * 109.46509 * 183.93356 * 18 16 14
33 33 H 1.09002 * 109.47466 * 303.93206 * 18 16 14
34 34 H 1.09000 * 109.47278 * 63.93709 * 18 16 14
35 35 H 1.08001 * 120.78960 * 0.02858 * 20 19 16
36 36 H 1.08003 * 120.41832 * 180.22319 * 21 20 19
37 37 H 1.08005 * 119.61789 * 179.70027 * 22 21 20
38 38 H 1.08006 * 119.61686 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.5789 -1.6368 -1.1338
6 6 1.7941 -0.1775 -2.4796
7 7 1.2360 1.0078 -2.5934
8 14 2.2642 -1.1394 -4.0104
9 1 1.0855 -1.8988 -4.4993
10 1 2.7195 -0.1989 -5.0655
11 1 3.3615 -2.0850 -3.6833
12 7 2.0183 -0.6906 1.1961
13 6 1.5584 -2.0486 1.4970
14 6 2.8907 -0.0766 2.0199
15 8 3.3453 -0.6715 2.9740
16 6 3.3060 1.3471 1.7518
17 1 3.6932 1.4275 0.7361
18 6 2.0958 2.2698 1.9107
19 6 4.3776 1.7508 2.7314
20 6 5.6300 2.1400 2.2811
21 6 6.5833 2.5074 3.2181
22 6 6.2595 2.4634 4.5612
23 7 5.0595 2.0831 4.9535
24 6 4.1263 1.7325 4.0900
25 1 -0.3634 0.4465 -0.9256
26 1 -0.3633 -1.0249 0.0762
27 1 -0.3633 0.5784 0.8495
28 1 1.0682 1.3825 -3.4723
29 1 0.6178 -2.0005 2.0456
30 1 1.4087 -2.5960 0.5665
31 1 2.3066 -2.5597 2.1028
32 1 2.3795 3.2892 1.6490
33 1 1.2947 1.9351 1.2517
34 1 1.7514 2.2425 2.9444
35 1 5.8561 2.1603 1.2252
36 1 7.5680 2.8194 2.9029
37 1 6.9981 2.7434 5.2978
38 1 3.1545 1.4269 4.4491
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000174616800.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:26
Heat of formation + Delta-G solvation = -19.190281 kcal
Electronic energy + Delta-G solvation = -20157.531016 eV
Core-core repulsion = 17192.336803 eV
Total energy + Delta-G solvation = -2965.194214 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.65806 -40.36854 -37.35768 -35.57865 -34.52864 -33.03675 -31.11826 -30.77246
-28.00259 -27.17443 -25.66585 -24.44971 -23.52064 -22.58259 -19.81144 -18.58899
-18.21778 -17.93413 -17.05927 -16.93867 -16.23221 -16.06269 -15.55098 -15.11179
-14.88366 -14.48573 -14.37344 -14.01687 -13.93337 -13.72550 -13.33947 -13.21524
-12.99647 -12.84263 -12.75362 -12.50804 -12.37643 -12.24116 -12.19141 -11.91872
-11.21126 -10.84263 -10.56348 -10.41659 -10.36001 -9.85713 -9.37976 -8.15491
-6.26819 0.21604 0.38455 1.41955 1.46240 1.53306 1.73510 2.32222
2.47664 2.94348 3.14697 3.47964 3.66941 3.77266 4.01132 4.09887
4.16387 4.28253 4.41855 4.54609 4.67571 4.68086 4.70049 4.82355
4.88585 4.92400 4.94847 4.99054 5.04369 5.16915 5.21900 5.39172
5.45159 5.54487 5.72944 5.82882 5.98674 6.19615 6.63565 6.86217
7.06372 7.30473 7.45616 8.89065
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.024576 B = 0.005827 C = 0.005384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1139.046394 B = 4804.022856 C = 5199.173838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.249 3.751
3 H 0.065 0.935
4 C -0.545 4.545
5 H 0.048 0.952
6 C 0.033 3.967
7 N -0.905 5.905
8 Si 0.947 3.053
9 H -0.276 1.276
10 H -0.282 1.282
11 H -0.277 1.277
12 N -0.595 5.595
13 C 0.090 3.910
14 C 0.512 3.488
15 O -0.592 6.592
16 C -0.059 4.059
17 H 0.102 0.898
18 C -0.140 4.140
19 C -0.122 4.122
20 C -0.081 4.081
21 C -0.166 4.166
22 C 0.082 3.918
23 N -0.514 5.514
24 C 0.117 3.883
25 H 0.060 0.940
26 H 0.039 0.961
27 H 0.036 0.964
28 H 0.267 0.733
29 H 0.059 0.941
30 H 0.069 0.931
31 H 0.060 0.940
32 H 0.081 0.919
33 H 0.071 0.929
34 H 0.063 0.937
35 H 0.148 0.852
36 H 0.170 0.830
37 H 0.185 0.815
38 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.007 4.237 6.524 9.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.148 3.852
3 H 0.083 0.917
4 C -0.583 4.583
5 H 0.066 0.934
6 C -0.168 4.168
7 N -0.544 5.544
8 Si 0.773 3.227
9 H -0.202 1.202
10 H -0.208 1.208
11 H -0.202 1.202
12 N -0.324 5.324
13 C -0.052 4.052
14 C 0.300 3.700
15 O -0.475 6.475
16 C -0.081 4.081
17 H 0.120 0.880
18 C -0.197 4.197
19 C -0.124 4.124
20 C -0.107 4.107
21 C -0.185 4.185
22 C -0.074 4.074
23 N -0.223 5.223
24 C -0.040 4.040
25 H 0.079 0.921
26 H 0.058 0.942
27 H 0.055 0.945
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.078 0.922
32 H 0.099 0.901
33 H 0.090 0.910
34 H 0.082 0.918
35 H 0.166 0.834
36 H 0.188 0.812
37 H 0.202 0.798
38 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 4.949 4.023 7.746 10.034
hybrid contribution 0.116 -0.743 -2.052 2.186
sum 5.065 3.280 5.694 8.297
Atomic orbital electron populations
1.21909 0.97347 0.99803 1.00441 1.19123 0.91868 0.93818 0.80435
0.91741 1.21550 1.36396 1.08703 0.91684 0.93411 1.25420 0.94973
0.95397 1.01015 1.69975 1.43489 1.16091 1.24812 0.85719 0.78373
0.78725 0.79843 1.20204 1.20774 1.20248 1.48238 1.43295 1.16016
1.24899 1.21479 0.99175 0.83496 1.01096 1.20741 0.78299 0.89102
0.81832 1.90596 1.57088 1.67844 1.31928 1.20092 0.96421 0.91977
0.99578 0.88017 1.21939 0.95811 0.99273 1.02708 1.20459 0.95870
1.00900 0.95207 1.21843 0.91886 0.95223 1.01752 1.22441 1.01493
1.00914 0.93694 1.23338 0.93344 0.94886 0.95853 1.67683 1.02907
1.11959 1.39730 1.22375 0.98269 0.94093 0.89230 0.92102 0.94167
0.94490 0.92416 0.92244 0.91180 0.92154 0.90053 0.91010 0.91810
0.83435 0.81218 0.79786 0.84362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.68 8.79 71.98 0.63 -5.05 16
2 C 0.25 10.98 1.55 44.24 0.07 11.05 16
3 H 0.07 2.93 4.24 -2.39 -0.01 2.92 16
4 C -0.54 -26.99 8.11 25.60 0.21 -26.79 16
5 H 0.05 2.45 7.51 -2.91 -0.02 2.43 16
6 C 0.03 1.65 5.22 84.65 0.44 2.09 16
7 N -0.91 -46.08 11.99 21.45 0.26 -45.82 16
8 Si 0.95 40.28 29.54 68.60 2.03 42.30 16
9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16
10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
12 N -0.59 -24.62 2.75 -826.82 -2.28 -26.89 16
13 C 0.09 3.38 9.25 127.77 1.18 4.56 16
14 C 0.51 20.97 6.90 87.66 0.61 21.58 16
15 O -0.59 -26.74 14.44 -3.04 -0.04 -26.79 16
16 C -0.06 -2.06 2.07 -12.28 -0.03 -2.09 16
17 H 0.10 3.73 7.26 -2.39 -0.02 3.71 16
18 C -0.14 -4.36 8.59 71.98 0.62 -3.75 16
19 C -0.12 -3.98 4.45 -19.78 -0.09 -4.07 16
20 C -0.08 -2.22 9.81 22.47 0.22 -2.00 16
21 C -0.17 -3.71 10.11 22.36 0.23 -3.49 16
22 C 0.08 2.02 11.18 84.69 0.95 2.97 16
23 N -0.51 -16.35 10.36 -195.84 -2.03 -18.38 16
24 C 0.12 3.95 9.02 84.67 0.76 4.71 16
25 H 0.06 2.79 6.68 -2.38 -0.02 2.77 16
26 H 0.04 1.59 7.38 -2.38 -0.02 1.57 16
27 H 0.04 1.37 7.59 -2.38 -0.02 1.35 16
28 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16
29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
30 H 0.07 2.62 7.33 -2.39 -0.02 2.60 16
31 H 0.06 2.27 7.25 -2.39 -0.02 2.25 16
32 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16
33 H 0.07 2.46 4.73 -2.39 -0.01 2.44 16
34 H 0.06 1.85 7.28 -2.39 -0.02 1.83 16
35 H 0.15 3.53 8.00 -2.91 -0.02 3.51 16
36 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16
37 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16
38 H 0.14 4.81 7.39 -2.91 -0.02 4.79 16
Total: -1.00 -59.76 308.82 4.79 -54.97
By element:
Atomic # 1 Polarization: 19.83 SS G_CDS: 1.06 Total: 20.88 kcal
Atomic # 6 Polarization: -6.08 SS G_CDS: 5.80 Total: -0.28 kcal
Atomic # 7 Polarization: -87.04 SS G_CDS: -4.05 Total: -91.09 kcal
Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.79 kcal
Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal
Total: -59.76 4.79 -54.97 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174616800.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.782 kcal
(2) G-P(sol) polarization free energy of solvation -59.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.973 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.190 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds