Wall clock time and date at job start Mon Mar 30 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 5 5 O 1.21279 * 120.00406 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99563 * 299.99249 * 4 2 1 7 7 C 1.46499 * 120.00229 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99546 * 180.02562 * 6 4 2 9 9 H 1.08996 * 109.47508 * 0.02562 * 8 6 4 10 10 C 1.53002 * 109.47083 * 120.00689 * 8 6 4 11 11 C 1.50705 * 109.47047 * 240.00317 * 8 6 4 12 12 H 1.07998 * 119.99966 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00132 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00142 * 179.97438 * 13 11 8 15 15 Si 1.86798 * 119.99932 * 359.97438 * 13 11 8 16 16 H 1.48505 * 109.47124 * 90.00270 * 15 13 11 17 17 H 1.48501 * 109.47332 * 209.99907 * 15 13 11 18 18 H 1.48494 * 109.47421 * 330.00304 * 15 13 11 19 19 C 1.50701 * 109.46746 * 240.00180 * 2 1 3 20 20 C 1.38678 * 120.41913 * 120.00562 * 19 2 1 21 21 C 1.38628 * 118.41892 * 180.02562 * 20 19 2 22 22 C 1.38227 * 119.16449 * 359.97438 * 21 20 19 23 23 N 1.31859 * 120.76190 * 359.97438 * 22 21 20 24 24 C 1.31892 * 121.72603 * 359.70955 * 23 22 21 25 25 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 27 27 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47391 * 89.99442 * 7 6 4 29 29 H 1.09001 * 109.46813 * 329.99499 * 7 6 4 30 30 H 1.09004 * 109.47041 * 209.99626 * 7 6 4 31 31 H 1.08996 * 109.47255 * 59.99470 * 10 8 6 32 32 H 1.09002 * 109.47233 * 179.97438 * 10 8 6 33 33 H 1.09001 * 109.46541 * 299.99577 * 10 8 6 34 34 H 0.96996 * 120.00119 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.78672 * 359.97438 * 20 19 2 36 36 H 1.08002 * 120.41507 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.61964 * 179.97438 * 22 21 20 38 38 H 1.07993 * 119.61890 * 180.31213 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6506 9 1 2.8017 -1.7963 3.3540 10 6 3.0453 0.0217 4.4833 11 6 1.0237 -1.4143 4.4712 12 1 0.0157 -1.2202 4.1355 13 6 1.2384 -2.0947 5.6510 14 7 0.2158 -2.5078 6.3673 15 14 2.9818 -2.4297 6.2320 16 1 3.4438 -1.3056 7.0855 17 1 3.0086 -3.6902 7.0166 18 1 3.8792 -2.5594 5.0560 19 6 2.0323 -0.7104 -1.2305 20 6 2.8301 -0.0449 -2.1490 21 6 3.2686 -0.7381 -3.2666 22 6 2.8991 -2.0604 -3.4269 23 7 2.1397 -2.6617 -2.5322 24 6 1.7095 -2.0353 -1.4542 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.1837 0.6428 2.6224 29 1 1.0275 1.5996 1.7360 30 1 1.1220 1.4665 3.5085 31 1 2.4395 0.8779 4.7799 32 1 3.4086 -0.4918 5.3735 33 1 3.8929 0.3645 3.8898 34 1 0.3668 -2.9868 7.1971 35 1 3.1026 0.9891 -1.9977 36 1 3.8917 -0.2514 -4.0023 37 1 3.2362 -2.6073 -4.2950 38 1 1.0933 -2.5622 -0.7409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174616809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:28 Heat of formation + Delta-G solvation = -12.704947 kcal Electronic energy + Delta-G solvation = -20018.521552 eV Core-core repulsion = 17053.608563 eV Total energy + Delta-G solvation = -2964.912988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66898 -40.41287 -37.31449 -35.83190 -34.61303 -33.08385 -32.25311 -30.31774 -27.85023 -27.18448 -25.82626 -24.47676 -24.10317 -22.05998 -19.94090 -18.95282 -18.10656 -17.87797 -17.54866 -16.82435 -16.62508 -15.99185 -15.62408 -15.15707 -14.81382 -14.67041 -14.57009 -14.15294 -14.10603 -13.91703 -13.64336 -13.37218 -13.30664 -12.95916 -12.88554 -12.59621 -12.40811 -12.09976 -11.98530 -11.60229 -11.33566 -10.81139 -10.80234 -10.47650 -10.35471 -9.87083 -9.38455 -8.36147 -6.40014 0.20116 0.40469 1.23402 1.33907 1.41882 1.73869 2.25984 2.28293 2.92616 2.99473 3.43963 3.64619 3.76017 3.97229 4.08704 4.14277 4.25588 4.39334 4.43751 4.44670 4.57900 4.60816 4.69141 4.76407 4.81354 4.86615 4.90874 5.00443 5.08173 5.21597 5.26330 5.32494 5.40120 5.49007 5.72471 5.83214 6.19960 6.62248 6.74782 7.07714 7.21360 7.38131 8.79877 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.005368 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.892672 B = 5214.966304 C = 5442.626611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 H 0.142 0.858 4 C 0.501 3.499 5 O -0.596 6.596 6 N -0.592 5.592 7 C 0.077 3.923 8 C 0.230 3.770 9 H 0.026 0.974 10 C -0.153 4.153 11 C -0.523 4.523 12 H 0.047 0.953 13 C 0.023 3.977 14 N -0.939 5.939 15 Si 0.939 3.061 16 H -0.251 1.251 17 H -0.297 1.297 18 H -0.266 1.266 19 C -0.123 4.123 20 C -0.069 4.069 21 C -0.167 4.167 22 C 0.077 3.923 23 N -0.523 5.523 24 C 0.106 3.894 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.268 0.732 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 12.639 -17.038 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 H 0.160 0.840 4 C 0.290 3.710 5 O -0.478 6.478 6 N -0.322 5.322 7 C -0.064 4.064 8 C 0.126 3.874 9 H 0.044 0.956 10 C -0.211 4.211 11 C -0.561 4.561 12 H 0.065 0.935 13 C -0.175 4.175 14 N -0.579 5.579 15 Si 0.767 3.233 16 H -0.177 1.177 17 H -0.225 1.225 18 H -0.191 1.191 19 C -0.126 4.126 20 C -0.095 4.095 21 C -0.186 4.186 22 C -0.079 4.079 23 N -0.232 5.232 24 C -0.050 4.050 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.196 0.804 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.663 11.185 -17.034 20.905 hybrid contribution 0.527 -0.224 1.170 1.303 sum 5.190 10.961 -15.864 19.969 Atomic orbital electron populations 1.22067 0.90793 1.02636 1.05218 1.20239 0.98701 1.00828 0.87671 0.84009 1.21239 0.79896 0.84385 0.85496 1.90651 1.41222 1.28848 1.87053 1.47879 1.49893 1.29261 1.05161 1.22065 0.94158 0.86139 1.04062 1.18944 0.93482 0.91805 0.83128 0.95610 1.22307 0.99375 1.00452 0.98975 1.21366 0.93134 1.36044 1.05603 0.93476 1.25615 1.00500 0.94803 0.96618 1.69995 1.32372 1.39872 1.15617 0.86011 0.81063 0.77444 0.78820 1.17665 1.22499 1.19141 1.20484 0.99939 0.95299 0.96833 1.21902 0.93319 1.01718 0.92580 1.22498 1.01324 0.95490 0.99317 1.23332 0.93320 0.93695 0.97565 1.67636 1.12143 1.39922 1.03537 1.22325 0.96999 0.92278 0.93399 0.89332 0.88681 0.94317 0.92831 0.87540 0.90749 0.90708 0.94217 0.92529 0.92309 0.81286 0.80870 0.80401 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.65 71.98 0.62 -2.74 16 2 C -0.05 -1.34 2.11 -12.29 -0.03 -1.37 16 3 H 0.14 2.42 7.19 -2.39 -0.02 2.40 16 4 C 0.50 19.07 6.95 87.66 0.61 19.68 16 5 O -0.60 -28.73 14.43 -3.02 -0.04 -28.77 16 6 N -0.59 -22.96 2.75 -826.78 -2.28 -25.23 16 7 C 0.08 2.17 8.04 127.77 1.03 3.20 16 8 C 0.23 11.00 2.23 44.25 0.10 11.10 16 9 H 0.03 1.43 5.96 -2.39 -0.01 1.41 16 10 C -0.15 -6.22 8.65 71.98 0.62 -5.59 16 11 C -0.52 -29.28 8.95 25.60 0.23 -29.06 16 12 H 0.05 2.86 7.89 -2.91 -0.02 2.84 16 13 C 0.02 1.35 5.45 84.65 0.46 1.81 16 14 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 15 Si 0.94 45.58 24.37 68.60 1.67 47.25 16 16 H -0.25 -11.09 6.87 99.48 0.68 -10.40 16 17 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 18 H -0.27 -12.94 6.53 99.48 0.65 -12.29 16 19 C -0.12 -3.35 4.41 -19.77 -0.09 -3.44 16 20 C -0.07 -1.38 9.81 22.47 0.22 -1.16 16 21 C -0.17 -3.00 10.11 22.36 0.23 -2.78 16 22 C 0.08 1.80 11.18 84.69 0.95 2.75 16 23 N -0.52 -16.87 10.36 -195.84 -2.03 -18.90 16 24 C 0.11 3.57 9.11 84.67 0.77 4.34 16 25 H 0.09 1.86 4.53 -2.39 -0.01 1.84 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.06 7.43 -2.39 -0.02 1.04 16 28 H 0.05 1.57 6.95 -2.39 -0.02 1.55 16 29 H 0.11 1.92 6.01 -2.39 -0.01 1.90 16 30 H 0.07 2.08 6.43 -2.38 -0.02 2.06 16 31 H 0.07 2.73 6.66 -2.39 -0.02 2.71 16 32 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.17 2.01 8.00 -2.91 -0.02 1.99 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.12 4.62 7.53 -2.91 -0.02 4.60 16 Total: -1.00 -78.43 300.59 4.33 -74.10 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.99 Total: 12.32 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.72 Total: -3.25 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.01 Total: -101.65 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.04 Total: -28.77 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -78.43 4.33 -74.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174616809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds