Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46793 * 2 1 4 4 C 1.38236 * 119.99414 * 90.00577 * 3 2 1 5 5 C 1.38237 * 119.99509 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00062 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46990 * 89.99891 * 7 6 5 9 9 C 1.46902 * 110.99573 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46656 * 179.97438 * 9 8 7 11 11 O 1.21294 * 120.00016 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99715 * 179.97438 * 10 9 8 13 13 C 1.37092 * 119.99635 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00232 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99808 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46862 * 90.00107 * 17 15 13 19 19 H 1.48503 * 109.47267 * 209.99668 * 17 15 13 20 20 H 1.48499 * 109.47390 * 329.99751 * 17 15 13 21 21 C 1.38237 * 119.99882 * 0.25351 * 6 5 4 22 22 C 1.38230 * 119.99851 * 359.49431 * 21 6 5 23 23 H 1.09000 * 109.47198 * 59.99676 * 1 2 3 24 24 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46925 * 300.00060 * 1 2 3 26 26 H 1.09002 * 109.46727 * 240.00452 * 2 1 3 27 27 H 1.09000 * 109.47198 * 120.00324 * 2 1 3 28 28 H 1.07998 * 120.00053 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.99878 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47064 * 330.00168 * 7 6 5 31 31 H 1.09000 * 109.47099 * 209.99894 * 7 6 5 32 32 H 1.00896 * 111.00309 * 56.04484 * 8 7 6 33 33 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 34 34 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 35 35 H 0.96993 * 119.99587 * 0.02562 * 12 10 9 36 36 H 0.96997 * 119.99955 * 180.02562 * 16 15 13 37 37 H 1.08003 * 119.99515 * 179.73041 * 21 6 5 38 38 H 1.08003 * 119.99895 * 180.25476 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4565 5.4481 0.0002 8 7 4.9255 5.4482 0.0001 9 6 5.4518 6.8197 0.0008 10 6 6.9584 6.7795 0.0013 11 8 7.5366 5.7133 0.0006 12 7 7.6631 7.9284 0.0014 13 6 9.0335 7.8919 0.0013 14 1 9.5485 6.9425 0.0016 15 6 9.7601 9.0763 0.0020 16 7 9.1336 10.2315 0.0022 17 14 11.6274 9.0265 0.0027 18 1 12.1227 9.0139 -1.3973 19 1 12.1544 10.2252 0.7032 20 1 12.0898 7.8011 0.7025 21 6 2.7183 3.3777 -1.1970 22 6 2.2621 2.0728 -1.1971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0825 1.5633 2.1325 29 1 2.9036 3.8847 2.1326 30 1 3.0932 5.9619 0.8903 31 1 3.0931 5.9620 -0.8897 32 1 5.2871 4.9221 -0.7813 33 1 5.1024 7.3434 -0.8889 34 1 5.1024 7.3426 0.8911 35 1 7.2006 8.7810 0.0015 36 1 9.6408 11.0583 0.0023 37 1 2.8941 3.8884 -2.1323 38 1 2.0816 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227771649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -26.899549 kcal Electronic energy + Delta-G solvation = -18303.800675 eV Core-core repulsion = 15338.272162 eV Total energy + Delta-G solvation = -2965.528513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58322 -38.21944 -35.86198 -34.07844 -33.58142 -31.21634 -30.92369 -30.18329 -27.15104 -25.11702 -23.68355 -22.75269 -22.44607 -20.53147 -19.24307 -17.88410 -16.60926 -15.90307 -15.75942 -15.29338 -14.97671 -14.46937 -14.39507 -13.88245 -13.84589 -13.63733 -13.42546 -13.32713 -12.96610 -12.59841 -11.93486 -11.90980 -11.72488 -11.51696 -11.47244 -11.32269 -11.02399 -10.88127 -10.81806 -10.37905 -10.20146 -9.49210 -8.90359 -8.60899 -8.43876 -8.00614 -7.93476 -6.39983 -3.80669 1.30395 1.42736 3.19203 3.27633 3.34001 3.68529 3.93363 4.17124 4.51631 4.62442 4.69616 4.93481 4.97083 5.00137 5.14262 5.16944 5.26982 5.33408 5.37232 5.46518 5.60249 5.66009 5.67151 5.78226 5.82774 5.91932 5.99605 6.06469 6.08924 6.28329 6.40974 6.58086 6.66785 7.00397 7.23497 7.56997 7.68706 8.08382 8.63508 9.19830 9.56354 10.08126 10.77846 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.053511 B = 0.002863 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.133677 B = 9779.180461 C = 9979.879982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.120 4.120 5 C -0.093 4.093 6 C -0.080 4.080 7 C 0.097 3.903 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.582 6.582 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.111 4.111 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.350 0.650 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.119 0.881 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.645 -12.522 -0.788 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.111 4.111 6 C -0.080 4.080 7 C -0.032 4.032 8 N -0.296 5.296 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.466 6.466 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.129 4.129 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.170 0.830 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.110 -13.098 -0.102 21.548 hybrid contribution 0.516 0.983 -0.913 1.437 sum -16.594 -12.115 -1.015 20.571 Atomic orbital electron populations 1.21745 0.94886 1.01504 1.02184 1.20533 0.96017 0.92901 1.02760 1.19859 0.99517 0.96068 0.93309 1.21000 1.00481 0.94973 0.97378 1.21036 0.97723 0.94520 0.97848 1.19793 0.98854 0.96144 0.93219 1.20915 0.88821 0.92404 1.01088 1.60121 1.04631 1.13345 1.51516 1.21699 0.95147 0.90190 1.01257 1.19812 0.88076 0.85027 0.84419 1.90529 1.71165 1.29663 1.55257 1.41862 1.07023 1.06760 1.64490 1.19706 0.81086 0.94530 1.47484 0.87935 1.25265 1.00721 0.94645 0.97383 1.69613 1.36584 0.97471 1.50730 0.85853 0.82214 0.77838 0.78358 1.20435 1.20927 1.19398 1.21046 0.99412 0.94905 0.97570 1.20935 1.00652 0.94814 0.97383 0.92624 0.92560 0.92578 0.91167 0.91119 0.86316 0.85861 0.90276 0.94680 0.83027 0.93835 0.89520 0.77453 0.91897 0.86325 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 5 C -0.09 -1.15 9.70 -39.58 -0.38 -1.53 16 6 C -0.08 -1.03 5.39 -104.62 -0.56 -1.59 16 7 C 0.10 1.28 5.81 -4.97 -0.03 1.25 16 8 N -0.66 -11.32 6.11 -116.33 -0.71 -12.03 16 9 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 10 C 0.44 10.68 7.82 -10.98 -0.09 10.59 16 11 O -0.58 -16.27 15.78 5.55 0.09 -16.18 16 12 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 17 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16 22 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.12 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.35 6.27 8.42 -39.29 -0.33 5.94 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -31.71 328.45 -8.50 -40.21 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.65 Total: 12.12 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.82 Total: -6.64 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.04 Total: -50.73 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.71 -8.50 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227771649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.312 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds