Wall clock time and date at job start Mon Mar 30 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46793 * 2 1 4 4 C 1.38236 * 119.99414 * 90.00577 * 3 2 1 5 5 C 1.38237 * 119.99509 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00062 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46990 * 89.99891 * 7 6 5 9 9 C 1.46902 * 110.99573 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46656 * 179.97438 * 9 8 7 11 11 O 1.21294 * 120.00016 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99715 * 179.97438 * 10 9 8 13 13 C 1.37092 * 119.99635 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00232 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99808 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46862 * 90.00107 * 17 15 13 19 19 H 1.48503 * 109.47267 * 209.99668 * 17 15 13 20 20 H 1.48499 * 109.47390 * 329.99751 * 17 15 13 21 21 C 1.38237 * 119.99882 * 0.25351 * 6 5 4 22 22 C 1.38230 * 119.99851 * 359.49431 * 21 6 5 23 23 H 1.09000 * 109.47198 * 59.99676 * 1 2 3 24 24 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46925 * 300.00060 * 1 2 3 26 26 H 1.09002 * 109.46727 * 240.00452 * 2 1 3 27 27 H 1.09000 * 109.47198 * 120.00324 * 2 1 3 28 28 H 1.07998 * 120.00053 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.99878 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47064 * 330.00168 * 7 6 5 31 31 H 1.09000 * 109.47099 * 209.99894 * 7 6 5 32 32 H 1.00896 * 111.00309 * 56.04484 * 8 7 6 33 33 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 34 34 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 35 35 H 0.96993 * 119.99587 * 0.02562 * 12 10 9 36 36 H 0.96997 * 119.99955 * 180.02562 * 16 15 13 37 37 H 1.08003 * 119.99515 * 179.73041 * 21 6 5 38 38 H 1.08003 * 119.99895 * 180.25476 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4565 5.4481 0.0002 8 7 4.9255 5.4482 0.0001 9 6 5.4518 6.8197 0.0008 10 6 6.9584 6.7795 0.0013 11 8 7.5366 5.7133 0.0006 12 7 7.6631 7.9284 0.0014 13 6 9.0335 7.8919 0.0013 14 1 9.5485 6.9425 0.0016 15 6 9.7601 9.0763 0.0020 16 7 9.1336 10.2315 0.0022 17 14 11.6274 9.0265 0.0027 18 1 12.1227 9.0139 -1.3973 19 1 12.1544 10.2252 0.7032 20 1 12.0898 7.8011 0.7025 21 6 2.7183 3.3777 -1.1970 22 6 2.2621 2.0728 -1.1971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0825 1.5633 2.1325 29 1 2.9036 3.8847 2.1326 30 1 3.0932 5.9619 0.8903 31 1 3.0931 5.9620 -0.8897 32 1 5.2871 4.9221 -0.7813 33 1 5.1024 7.3434 -0.8889 34 1 5.1024 7.3426 0.8911 35 1 7.2006 8.7810 0.0015 36 1 9.6408 11.0583 0.0023 37 1 2.8941 3.8884 -2.1323 38 1 2.0816 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227771649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:21 Heat of formation + Delta-G solvation = -47.546614 kcal Electronic energy + Delta-G solvation = -18304.695999 eV Core-core repulsion = 15338.272162 eV Total energy + Delta-G solvation = -2966.423836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51085 -40.05598 -37.06647 -35.92486 -34.68946 -33.27411 -31.78295 -31.16755 -28.52991 -26.65516 -25.03758 -23.61379 -23.35996 -21.41810 -21.07829 -19.92999 -18.04617 -17.22229 -16.83993 -16.53447 -16.21917 -16.11492 -15.84591 -15.21104 -15.11286 -14.66581 -14.46041 -14.34527 -14.09427 -13.79710 -13.51914 -13.18288 -13.03722 -12.77601 -12.74426 -12.45853 -12.42565 -12.12541 -12.04564 -11.64932 -11.61818 -11.51923 -10.37568 -10.02873 -9.78092 -9.54068 -9.26222 -8.47539 -5.96479 0.41717 0.54983 1.37552 1.41329 1.54401 2.03782 2.28718 2.73326 3.12215 3.19512 3.59930 3.83400 3.92895 4.02917 4.18011 4.22634 4.31731 4.46256 4.52130 4.53100 4.55751 4.61743 4.68384 4.77074 4.80789 5.08383 5.10609 5.18952 5.25564 5.39915 5.40348 5.53841 5.75024 5.75926 5.86033 6.07234 6.17246 6.34609 6.59211 7.11512 7.54813 8.10415 8.69856 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.053511 B = 0.002863 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.133677 B = 9779.180461 C = 9979.879982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.099 4.099 7 C 0.102 3.898 8 N -0.679 5.679 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.625 6.625 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.128 4.128 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.342 0.658 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.128 0.872 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.463 -12.798 -0.998 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.147 4.147 5 C -0.127 4.127 6 C -0.099 4.099 7 C -0.026 4.026 8 N -0.311 5.311 9 C -0.068 4.068 10 C 0.225 3.775 11 O -0.511 6.511 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.195 1.195 19 H -0.194 1.194 20 H -0.199 1.199 21 C -0.139 4.139 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.967 -13.351 -0.310 22.386 hybrid contribution 0.704 1.007 -0.846 1.492 sum -17.262 -12.343 -1.156 21.253 Atomic orbital electron populations 1.21722 0.93966 1.02411 1.01923 1.20590 0.96729 0.91349 1.03490 1.20210 0.98564 0.97230 0.93000 1.21256 1.00244 0.94711 0.98491 1.21206 0.98311 0.95288 0.97895 1.19847 1.00032 0.96197 0.93829 1.20942 0.86281 0.93224 1.02188 1.60124 1.07075 1.12491 1.51460 1.21566 0.90321 0.91565 1.03342 1.20886 0.90639 0.83800 0.82216 1.90495 1.72864 1.31089 1.56685 1.41927 1.06504 1.07534 1.65019 1.19662 0.82592 0.94146 1.50021 0.90428 1.26058 1.05062 0.93960 0.96232 1.69670 1.38240 0.97912 1.50246 0.84919 0.76715 0.77948 0.78697 1.19528 1.19430 1.19866 1.21251 0.99434 0.95506 0.97689 1.21229 1.00240 0.94635 0.98443 0.92841 0.91087 0.92896 0.90381 0.90487 0.84714 0.85759 0.89411 0.93119 0.83915 0.91277 0.87539 0.76884 0.91246 0.85420 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.90 71.98 0.71 -1.01 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.09 -1.78 5.13 -19.86 -0.10 -1.88 16 4 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 5 C -0.11 -2.63 9.70 22.27 0.22 -2.42 16 6 C -0.10 -2.47 5.39 -19.87 -0.11 -2.57 16 7 C 0.10 2.56 5.81 85.56 0.50 3.06 16 8 N -0.68 -22.72 6.11 -521.96 -3.19 -25.91 16 9 C 0.06 2.26 6.17 85.56 0.53 2.78 16 10 C 0.44 21.36 7.82 87.66 0.69 22.04 16 11 O -0.62 -35.80 15.78 -3.07 -0.05 -35.85 16 12 N -0.57 -29.92 5.29 -306.97 -1.62 -31.54 16 13 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 16 N -0.92 -50.01 13.05 21.66 0.28 -49.72 16 17 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 22 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 28 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.09 2.03 8.09 -2.39 -0.02 2.02 16 31 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.34 12.25 8.42 -89.70 -0.76 11.49 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 36 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -68.16 328.45 1.56 -66.60 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.43 Total: 38.29 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.54 Total: -7.27 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.53 Total: -107.18 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.05 Total: -35.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.16 1.56 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227771649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.049 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds