Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47153 * 180.02562 * 16 15 13 18 18 C 1.38131 * 120.03846 * 264.99967 * 17 16 15 19 19 C 1.38259 * 120.07336 * 179.97438 * 18 17 16 20 20 C 1.38314 * 120.15351 * 0.04210 * 19 18 17 21 21 C 1.38079 * 120.07070 * 359.97438 * 20 19 18 22 22 C 1.38894 * 120.03974 * 84.71589 * 17 16 15 23 23 N 1.39678 * 120.07282 * 0.02634 * 22 17 16 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.09001 * 109.46935 * 299.99228 * 16 15 13 32 32 H 1.08991 * 109.47484 * 60.00005 * 16 15 13 33 33 H 1.07997 * 119.95804 * 359.97178 * 18 17 16 34 34 H 1.07998 * 119.92136 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.96306 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.03271 * 180.02562 * 21 20 19 37 37 H 0.97003 * 119.99808 * 0.02562 * 23 22 17 38 38 H 0.96998 * 120.00269 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7018 0.2550 -4.7585 17 6 3.2040 -0.4553 -5.9891 18 6 4.5448 -0.4056 -6.3173 19 6 5.0065 -1.0575 -7.4458 20 6 4.1280 -1.7606 -8.2502 21 6 2.7864 -1.8141 -7.9280 22 6 2.3202 -1.1657 -6.7912 23 7 0.9647 -1.2225 -6.4593 24 1 -0.3633 0.4033 0.9453 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 1.7026 0.6471 -4.9483 32 1 3.3742 1.0770 -4.5132 33 1 5.2332 0.1432 -5.6918 34 1 6.0554 -1.0173 -7.7000 35 1 4.4919 -2.2683 -9.1313 36 1 2.1011 -2.3637 -8.5564 37 1 0.6395 -0.7653 -5.6680 38 1 0.3483 -1.7186 -7.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228110887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = -32.660346 kcal Electronic energy + Delta-G solvation = -19022.388602 eV Core-core repulsion = 16056.610283 eV Total energy + Delta-G solvation = -2965.778319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83297 -38.86812 -35.11695 -34.66101 -33.54974 -32.44550 -30.35301 -29.25821 -28.34524 -24.99003 -24.45042 -22.40758 -21.24571 -20.36309 -19.50566 -17.76621 -17.26969 -17.08347 -16.38133 -15.35666 -15.26261 -14.93367 -14.13973 -13.94629 -13.82380 -13.41407 -13.23101 -12.98891 -12.77404 -12.56006 -12.13196 -11.88985 -11.68060 -11.45562 -11.32932 -10.93287 -10.89489 -10.68517 -10.49731 -10.12008 -9.84589 -9.23738 -9.14719 -8.78349 -8.30280 -8.15702 -7.58138 -6.60473 -4.21289 1.34337 1.56732 3.27055 3.40192 3.45373 3.61085 3.76135 3.78372 4.06755 4.43708 4.79810 4.82860 5.04015 5.10710 5.16421 5.22428 5.37831 5.46128 5.52151 5.72571 5.77831 5.94745 5.96905 6.24437 6.28843 6.38864 6.49973 6.54699 6.61323 6.67702 6.83782 6.96723 7.29560 7.38959 7.41586 7.63849 7.68203 8.23921 8.50151 8.70528 8.99997 9.44792 10.77791 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039581 B = 0.003713 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.248873 B = 7539.691693 C = 7637.200381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.040 0.960 4 C -0.625 4.625 5 H 0.062 0.938 6 C 0.045 3.955 7 N -0.891 5.891 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.499 3.501 14 O -0.560 6.560 15 C -0.137 4.137 16 C -0.055 4.055 17 C -0.157 4.157 18 C -0.068 4.068 19 C -0.180 4.180 20 C -0.079 4.079 21 C -0.201 4.201 22 C 0.221 3.779 23 N -0.878 5.878 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.270 0.730 28 H 0.393 0.607 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.401 0.599 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -2.496 -21.382 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 H 0.058 0.942 4 C -0.663 4.663 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.523 5.523 8 Si 0.861 3.139 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.351 5.351 13 C 0.284 3.716 14 O -0.439 6.439 15 C -0.177 4.177 16 C -0.093 4.093 17 C -0.162 4.162 18 C -0.087 4.087 19 C -0.200 4.200 20 C -0.097 4.097 21 C -0.224 4.224 22 C 0.116 3.884 23 N -0.417 5.417 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.231 0.769 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.213 -0.478 -20.239 20.281 hybrid contribution 0.048 -1.904 -1.025 2.163 sum 1.261 -2.382 -21.264 21.434 Atomic orbital electron populations 1.22417 0.99019 0.99827 1.00087 1.18965 0.90445 0.94146 0.82577 0.94243 1.22024 1.41996 1.11178 0.91076 0.92000 1.25645 0.92960 1.05903 0.91743 1.70872 1.43080 1.06425 1.31878 0.84173 0.77765 0.75715 0.76221 1.20845 1.20657 1.20001 1.46323 1.65026 1.13731 1.10063 1.20605 0.78434 0.87569 0.84971 1.90638 1.51714 1.16185 1.85403 1.21687 1.03138 0.99404 0.93475 1.20111 1.02305 0.96896 0.89981 1.19459 0.93604 1.04172 0.98915 1.20876 0.94217 0.97440 0.96171 1.20875 0.99529 1.02454 0.97152 1.20832 0.92759 0.97502 0.98646 1.20536 0.96486 1.06663 0.98703 1.17643 0.84520 0.93376 0.92880 1.42630 1.05701 1.60803 1.32608 0.92320 0.95277 0.93887 0.91965 0.77459 0.89175 0.89699 0.91026 0.90154 0.86086 0.86595 0.86509 0.86557 0.76933 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.20 37.16 0.34 -3.19 16 2 C 0.24 5.87 2.16 -69.09 -0.15 5.72 16 3 H 0.04 1.04 6.15 -51.93 -0.32 0.72 16 4 C -0.63 -17.01 8.95 -34.44 -0.31 -17.32 16 5 H 0.06 1.76 7.96 -52.48 -0.42 1.34 16 6 C 0.05 1.27 5.19 -17.82 -0.09 1.18 16 7 N -0.89 -26.44 13.70 55.43 0.76 -25.68 16 8 Si 1.03 25.17 26.44 -169.99 -4.50 20.68 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.31 6.14 56.52 0.35 -5.97 16 12 N -0.70 -14.22 5.07 -54.94 -0.28 -14.50 16 13 C 0.50 9.34 7.79 -10.98 -0.09 9.25 16 14 O -0.56 -12.43 15.64 5.56 0.09 -12.35 16 15 C -0.14 -1.86 5.68 -27.88 -0.16 -2.02 16 16 C -0.06 -0.72 4.06 -27.88 -0.11 -0.83 16 17 C -0.16 -1.86 5.15 -104.42 -0.54 -2.40 16 18 C -0.07 -0.77 9.68 -39.61 -0.38 -1.15 16 19 C -0.18 -1.83 10.04 -39.55 -0.40 -2.23 16 20 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 21 C -0.20 -2.02 9.90 -39.38 -0.39 -2.41 16 22 C 0.22 2.42 6.74 -83.78 -0.56 1.85 16 23 N -0.88 -7.94 8.99 32.41 0.29 -7.64 16 24 H 0.06 1.37 5.47 -51.93 -0.28 1.09 16 25 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 28 H 0.39 7.08 8.53 -40.82 -0.35 6.73 16 29 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.95 6.79 -51.93 -0.35 0.60 16 32 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.40 3.77 6.94 -40.82 -0.28 3.48 16 38 H 0.40 2.70 8.84 -40.82 -0.36 2.34 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -31.72 317.00 -7.46 -39.19 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.37 Total: 10.22 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.23 Total: -14.69 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.77 Total: -47.83 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -4.50 Total: 20.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.72 -7.46 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228110887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.529 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds