Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47153 * 180.02562 * 16 15 13 18 18 C 1.38131 * 120.03846 * 264.99967 * 17 16 15 19 19 C 1.38259 * 120.07336 * 179.97438 * 18 17 16 20 20 C 1.38314 * 120.15351 * 0.04210 * 19 18 17 21 21 C 1.38079 * 120.07070 * 359.97438 * 20 19 18 22 22 C 1.38894 * 120.03974 * 84.71589 * 17 16 15 23 23 N 1.39678 * 120.07282 * 0.02634 * 22 17 16 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.09001 * 109.46935 * 299.99228 * 16 15 13 32 32 H 1.08991 * 109.47484 * 60.00005 * 16 15 13 33 33 H 1.07997 * 119.95804 * 359.97178 * 18 17 16 34 34 H 1.07998 * 119.92136 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.96306 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.03271 * 180.02562 * 21 20 19 37 37 H 0.97003 * 119.99808 * 0.02562 * 23 22 17 38 38 H 0.96998 * 120.00269 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7018 0.2550 -4.7585 17 6 3.2040 -0.4553 -5.9891 18 6 4.5448 -0.4056 -6.3173 19 6 5.0065 -1.0575 -7.4458 20 6 4.1280 -1.7606 -8.2502 21 6 2.7864 -1.8141 -7.9280 22 6 2.3202 -1.1657 -6.7912 23 7 0.9647 -1.2225 -6.4593 24 1 -0.3633 0.4033 0.9453 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 1.7026 0.6471 -4.9483 32 1 3.3742 1.0770 -4.5132 33 1 5.2332 0.1432 -5.6918 34 1 6.0554 -1.0173 -7.7000 35 1 4.4919 -2.2683 -9.1313 36 1 2.1011 -2.3637 -8.5564 37 1 0.6395 -0.7653 -5.6680 38 1 0.3483 -1.7186 -7.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228110887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = -54.295061 kcal Electronic energy + Delta-G solvation = -19023.326754 eV Core-core repulsion = 16056.610283 eV Total energy + Delta-G solvation = -2966.716471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91784 -40.15617 -36.88805 -35.49774 -34.57809 -34.44613 -31.84391 -30.42907 -29.22469 -26.92895 -25.67690 -23.21580 -22.67600 -21.56692 -21.14609 -19.74628 -18.15834 -17.88095 -17.73203 -17.00205 -16.34094 -16.16378 -15.60761 -14.99222 -14.92310 -14.72398 -14.55075 -14.42506 -14.17147 -14.05599 -13.66005 -13.37165 -13.25659 -12.88599 -12.45711 -12.36815 -12.03213 -11.86034 -11.75664 -11.74312 -11.46229 -11.23335 -10.78486 -10.46938 -9.89256 -9.61494 -8.82485 -8.33612 -6.43791 0.55091 0.79365 1.45816 1.48828 1.69833 1.77246 2.41620 2.50725 2.93877 3.03277 3.07994 3.78293 3.96050 4.09083 4.20170 4.28667 4.41420 4.50407 4.59893 4.66205 4.70491 4.74507 4.78651 4.91033 4.99105 5.09332 5.18961 5.28262 5.43005 5.49346 5.65470 5.67342 5.72763 5.82467 6.00771 6.09803 6.52011 6.64318 6.85814 6.99478 7.26105 7.45118 8.54963 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039581 B = 0.003713 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.248873 B = 7539.691693 C = 7637.200381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.244 3.756 3 H 0.021 0.979 4 C -0.624 4.624 5 H 0.041 0.959 6 C 0.002 3.998 7 N -0.919 5.919 8 Si 1.067 2.933 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.254 1.254 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.594 6.594 15 C -0.120 4.120 16 C -0.046 4.046 17 C -0.175 4.175 18 C -0.080 4.080 19 C -0.189 4.189 20 C -0.080 4.080 21 C -0.208 4.208 22 C 0.212 3.788 23 N -0.873 5.873 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.261 0.739 28 H 0.403 0.597 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.399 0.601 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -2.751 -23.518 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.139 3.861 3 H 0.039 0.961 4 C -0.661 4.661 5 H 0.060 0.940 6 C -0.200 4.200 7 N -0.553 5.553 8 Si 0.889 3.111 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.178 1.178 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.476 6.476 15 C -0.160 4.160 16 C -0.084 4.084 17 C -0.180 4.180 18 C -0.099 4.099 19 C -0.209 4.209 20 C -0.098 4.098 21 C -0.231 4.231 22 C 0.107 3.893 23 N -0.413 5.413 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.238 0.762 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.228 0.772 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.062 -0.767 -22.410 22.448 hybrid contribution 0.146 -1.888 -0.448 1.946 sum 1.207 -2.655 -22.858 23.043 Atomic orbital electron populations 1.22287 0.97685 1.00594 1.00027 1.18695 0.91376 0.93001 0.83044 0.96145 1.22188 1.41082 1.10369 0.92472 0.94047 1.26746 0.92641 1.08780 0.91813 1.70965 1.45541 1.06055 1.32729 0.83731 0.78748 0.71911 0.76672 1.20520 1.20006 1.17830 1.46196 1.65417 1.14257 1.09583 1.21408 0.77164 0.87176 0.85569 1.90621 1.53058 1.17950 1.85984 1.21634 1.03992 0.99498 0.90900 1.19973 1.01695 0.96386 0.90393 1.19372 0.94204 1.05412 0.98964 1.21044 0.94188 0.97816 0.96849 1.21135 1.00636 1.02268 0.96851 1.21189 0.92619 0.96874 0.99130 1.20832 0.97151 1.06526 0.98559 1.17803 0.85038 0.93359 0.93141 1.42616 1.05339 1.60656 1.32658 0.93170 0.94232 0.92972 0.92992 0.76205 0.87753 0.87535 0.91618 0.91640 0.85783 0.84964 0.84117 0.84662 0.77162 0.76409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 9.20 71.98 0.66 -5.85 16 2 C 0.24 11.66 2.16 44.24 0.10 11.76 16 3 H 0.02 1.08 6.15 -2.38 -0.01 1.06 16 4 C -0.62 -34.03 8.95 25.60 0.23 -33.80 16 5 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 6 C 0.00 0.14 5.19 84.66 0.44 0.58 16 7 N -0.92 -55.20 13.70 21.45 0.29 -54.91 16 8 Si 1.07 50.41 26.44 68.60 1.81 52.22 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.25 -11.08 6.14 99.48 0.61 -10.47 16 12 N -0.71 -27.83 5.07 -446.11 -2.26 -30.10 16 13 C 0.50 18.11 7.79 87.66 0.68 18.80 16 14 O -0.59 -26.05 15.64 -3.02 -0.05 -26.10 16 15 C -0.12 -3.07 5.68 29.85 0.17 -2.90 16 16 C -0.05 -1.16 4.06 29.85 0.12 -1.04 16 17 C -0.17 -3.89 5.15 -19.73 -0.10 -3.99 16 18 C -0.08 -1.69 9.68 22.25 0.22 -1.47 16 19 C -0.19 -3.44 10.04 22.29 0.22 -3.21 16 20 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 21 C -0.21 -3.62 9.90 22.40 0.22 -3.40 16 22 C 0.21 4.22 6.74 38.21 0.26 4.48 16 23 N -0.87 -14.02 8.99 -51.37 -0.46 -14.48 16 24 H 0.05 2.28 5.47 -2.39 -0.01 2.26 16 25 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 28 H 0.40 14.10 8.53 -92.71 -0.79 13.31 16 29 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 1.70 6.79 -2.39 -0.02 1.68 16 32 H 0.06 1.81 8.01 -2.39 -0.02 1.79 16 33 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.40 6.80 6.94 -92.71 -0.64 6.16 16 38 H 0.41 4.63 8.84 -92.71 -0.82 3.81 16 Total: -1.00 -67.41 317.00 1.48 -65.93 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -1.30 Total: 28.59 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.44 Total: -21.16 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -2.43 Total: -99.48 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.81 Total: 52.22 kcal Total: -67.41 1.48 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228110887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.631 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds