Wall clock time and date at job start Mon Mar 30 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46830 * 120.00120 * 2 1 3 5 5 O 1.21277 * 119.99756 * 120.00282 * 4 2 1 6 6 N 1.34780 * 119.99739 * 300.00013 * 4 2 1 7 7 C 1.46499 * 120.00301 * 0.02562 * 6 4 2 8 8 C 1.46503 * 119.99343 * 180.02562 * 6 4 2 9 9 C 1.50704 * 109.46868 * 90.00097 * 8 6 4 10 10 H 1.07995 * 120.00318 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99713 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99929 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00254 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47356 * 89.99835 * 13 11 9 15 15 H 1.48494 * 109.47131 * 210.00014 * 13 11 9 16 16 H 1.48507 * 109.46915 * 329.99843 * 13 11 9 17 17 C 1.50693 * 109.46975 * 240.00226 * 2 1 3 18 18 C 1.38315 * 119.96462 * 299.99786 * 17 2 1 19 19 C 1.38261 * 120.15250 * 179.70578 * 18 17 2 20 20 C 1.38124 * 120.07251 * 0.02562 * 19 18 17 21 21 C 1.38891 * 119.92654 * 0.02562 * 20 19 18 22 22 N 1.39673 * 120.07551 * 179.97438 * 21 20 19 23 23 C 1.38081 * 119.96457 * 119.72679 * 17 2 1 24 24 H 1.09000 * 109.47194 * 299.99931 * 1 2 3 25 25 H 1.08998 * 109.47452 * 60.00158 * 1 2 3 26 26 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47232 * 89.99838 * 7 6 4 28 28 H 1.09000 * 109.46467 * 210.00065 * 7 6 4 29 29 H 1.08998 * 109.46897 * 329.99818 * 7 6 4 30 30 H 1.09001 * 109.46787 * 209.99673 * 8 6 4 31 31 H 1.08997 * 109.47319 * 330.00104 * 8 6 4 32 32 H 0.96995 * 120.00751 * 180.02562 * 12 11 9 33 33 H 1.07999 * 119.91988 * 359.72209 * 18 17 2 34 34 H 1.07998 * 119.96300 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.03609 * 180.02562 * 20 19 18 36 36 H 0.97000 * 120.00074 * 0.02562 * 22 21 20 37 37 H 0.96999 * 120.00557 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.03732 * 0.27501 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 0.8639 0.9408 2.5890 8 6 2.1954 -0.9404 3.6507 9 6 3.5228 -0.3563 4.0607 10 1 3.9589 0.4484 3.4873 11 6 4.1804 -0.8492 5.1677 12 7 5.3386 -0.3392 5.5258 13 14 3.4266 -2.2414 6.1590 14 1 3.8874 -3.5434 5.6137 15 1 3.8468 -2.1225 7.5783 16 1 1.9459 -2.1649 6.0731 17 6 2.0323 -0.7103 -1.2304 18 6 1.6977 -2.0346 -1.4486 19 6 2.1514 -2.6883 -2.5793 20 6 2.9412 -2.0205 -3.4948 21 6 3.2799 -0.6911 -3.2783 22 7 4.0788 -0.0130 -4.2018 23 6 2.8214 -0.0369 -2.1417 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.1839 0.6426 2.6225 28 1 1.1217 1.4663 3.5085 29 1 1.0271 1.5996 1.7361 30 1 1.4775 -0.8151 4.4613 31 1 2.3169 -2.0016 3.4336 32 1 5.8015 -0.6861 6.3043 33 1 1.0804 -2.5590 -0.7342 34 1 1.8879 -3.7222 -2.7468 35 1 3.2949 -2.5317 -4.3781 36 1 4.3974 -0.4705 -4.9957 37 1 4.3145 0.9155 -4.0498 38 1 3.0824 0.9971 -1.9708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235074320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:56 Heat of formation + Delta-G solvation = -5.286628 kcal Electronic energy + Delta-G solvation = -19654.654613 eV Core-core repulsion = 16690.063307 eV Total energy + Delta-G solvation = -2964.591306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.94067 -38.53287 -35.07320 -34.77456 -33.25224 -32.32159 -29.87596 -28.43993 -27.80991 -26.17529 -24.28793 -22.65749 -22.13948 -20.70497 -18.41372 -16.97090 -16.85205 -16.66412 -16.07558 -15.70204 -15.16457 -14.72173 -14.26899 -13.77627 -13.53088 -13.35152 -13.10789 -12.95144 -12.68602 -12.36824 -12.19710 -11.91982 -11.66085 -11.49283 -11.20849 -11.05072 -10.78833 -10.62828 -10.48360 -10.31449 -10.10227 -9.50486 -8.91369 -8.55873 -8.49654 -7.63876 -7.35475 -6.05736 -4.04144 1.62743 1.89102 3.31490 3.37431 3.39331 3.43352 3.80508 3.96376 4.19467 4.42436 4.80628 5.00530 5.18957 5.28069 5.31565 5.36661 5.41954 5.60756 5.73607 5.74149 5.81562 5.83999 5.94129 6.07520 6.14333 6.17882 6.30837 6.48177 6.73631 6.78062 6.95498 7.00911 7.08284 7.39451 7.59367 7.64687 7.78628 8.30858 8.50684 8.96949 9.06220 9.54845 11.07837 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.005072 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.742543 B = 5519.076614 C = 5805.300703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 H 0.098 0.902 4 C 0.512 3.488 5 O -0.529 6.529 6 N -0.598 5.598 7 C 0.082 3.918 8 C 0.216 3.784 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.877 3.123 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 C -0.010 4.010 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.202 4.202 21 C 0.208 3.792 22 N -0.884 5.884 23 C -0.189 4.189 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.394 0.606 37 H 0.395 0.605 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 2.094 -16.391 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 H 0.116 0.884 4 C 0.298 3.702 5 O -0.405 6.405 6 N -0.330 5.330 7 C -0.062 4.062 8 C 0.095 3.905 9 C -0.566 4.566 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 C -0.011 4.011 18 C -0.158 4.158 19 C -0.095 4.095 20 C -0.225 4.225 21 C 0.105 3.895 22 N -0.423 5.423 23 C -0.211 4.211 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.222 0.778 37 H 0.223 0.777 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.776 1.522 -16.241 19.017 hybrid contribution 0.179 -0.374 0.438 0.603 sum -9.596 1.148 -15.803 18.524 Atomic orbital electron populations 1.22025 0.92552 1.03081 1.03024 1.20319 0.97403 1.00146 0.91759 0.88438 1.20152 0.80863 0.85117 0.84033 1.90690 1.37129 1.26602 1.86050 1.47785 1.50151 1.28450 1.06652 1.21810 0.93520 0.88054 1.02840 1.19650 0.95232 0.93728 0.81867 1.21345 1.03146 1.20230 1.11866 0.90835 1.24863 0.94638 0.96473 0.97079 1.69897 1.14851 1.42392 1.26606 0.86840 0.80029 0.83310 0.79451 1.19918 1.21106 1.19056 1.19068 0.95022 0.93929 0.93072 1.20665 1.03306 0.94181 0.97636 1.20792 0.96188 0.98935 0.93610 1.20476 1.06191 0.93595 1.02240 1.17642 0.90824 0.91535 0.89532 1.42386 1.58911 1.15160 1.25861 1.20381 1.04760 1.00262 0.95714 0.90633 0.91853 0.92038 0.93343 0.90756 0.91966 0.95287 0.94585 0.92606 0.86658 0.86463 0.86829 0.77810 0.77688 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.64 37.16 0.32 -1.48 16 2 C -0.07 -1.16 2.10 -92.92 -0.19 -1.36 16 3 H 0.10 1.38 7.13 -51.93 -0.37 1.01 16 4 C 0.51 10.70 6.94 -10.98 -0.08 10.62 16 5 O -0.53 -13.38 14.68 5.56 0.08 -13.30 16 6 N -0.60 -12.47 2.86 -182.95 -0.52 -12.99 16 7 C 0.08 1.25 8.80 59.85 0.53 1.77 16 8 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 9 C -0.53 -15.43 9.94 -34.44 -0.34 -15.78 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 13 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 14 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 17 C -0.01 -0.16 4.39 -104.65 -0.46 -0.62 16 18 C -0.14 -2.21 7.93 -39.54 -0.31 -2.52 16 19 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 20 C -0.20 -2.67 9.90 -39.38 -0.39 -3.06 16 21 C 0.21 2.77 6.75 -83.79 -0.57 2.20 16 22 N -0.88 -8.56 9.09 32.41 0.29 -8.26 16 23 C -0.19 -2.76 9.52 -39.38 -0.37 -3.13 16 24 H 0.07 0.82 4.53 -51.93 -0.24 0.59 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 27 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 28 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.12 1.87 7.51 -52.49 -0.39 1.48 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.39 2.99 8.84 -40.82 -0.36 2.62 16 37 H 0.40 3.22 8.84 -40.82 -0.36 2.86 16 38 H 0.12 1.51 7.94 -52.48 -0.42 1.09 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -35.72 311.27 -6.94 -42.66 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.20 Total: 4.81 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.39 Total: -7.46 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.55 Total: -48.63 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.72 -6.94 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235074320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.373 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds