Wall clock time and date at job start Mon Mar 30 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46830 * 120.00120 * 2 1 3 5 5 O 1.21277 * 119.99756 * 120.00282 * 4 2 1 6 6 N 1.34780 * 119.99739 * 300.00013 * 4 2 1 7 7 C 1.46499 * 120.00301 * 0.02562 * 6 4 2 8 8 C 1.46503 * 119.99343 * 180.02562 * 6 4 2 9 9 C 1.50704 * 109.46868 * 90.00097 * 8 6 4 10 10 H 1.07995 * 120.00318 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99713 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99929 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00254 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47356 * 89.99835 * 13 11 9 15 15 H 1.48494 * 109.47131 * 210.00014 * 13 11 9 16 16 H 1.48507 * 109.46915 * 329.99843 * 13 11 9 17 17 C 1.50693 * 109.46975 * 240.00226 * 2 1 3 18 18 C 1.38315 * 119.96462 * 299.99786 * 17 2 1 19 19 C 1.38261 * 120.15250 * 179.70578 * 18 17 2 20 20 C 1.38124 * 120.07251 * 0.02562 * 19 18 17 21 21 C 1.38891 * 119.92654 * 0.02562 * 20 19 18 22 22 N 1.39673 * 120.07551 * 179.97438 * 21 20 19 23 23 C 1.38081 * 119.96457 * 119.72679 * 17 2 1 24 24 H 1.09000 * 109.47194 * 299.99931 * 1 2 3 25 25 H 1.08998 * 109.47452 * 60.00158 * 1 2 3 26 26 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47232 * 89.99838 * 7 6 4 28 28 H 1.09000 * 109.46467 * 210.00065 * 7 6 4 29 29 H 1.08998 * 109.46897 * 329.99818 * 7 6 4 30 30 H 1.09001 * 109.46787 * 209.99673 * 8 6 4 31 31 H 1.08997 * 109.47319 * 330.00104 * 8 6 4 32 32 H 0.96995 * 120.00751 * 180.02562 * 12 11 9 33 33 H 1.07999 * 119.91988 * 359.72209 * 18 17 2 34 34 H 1.07998 * 119.96300 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.03609 * 180.02562 * 20 19 18 36 36 H 0.97000 * 120.00074 * 0.02562 * 22 21 20 37 37 H 0.96999 * 120.00557 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.03732 * 0.27501 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 0.8639 0.9408 2.5890 8 6 2.1954 -0.9404 3.6507 9 6 3.5228 -0.3563 4.0607 10 1 3.9589 0.4484 3.4873 11 6 4.1804 -0.8492 5.1677 12 7 5.3386 -0.3392 5.5258 13 14 3.4266 -2.2414 6.1590 14 1 3.8874 -3.5434 5.6137 15 1 3.8468 -2.1225 7.5783 16 1 1.9459 -2.1649 6.0731 17 6 2.0323 -0.7103 -1.2304 18 6 1.6977 -2.0346 -1.4486 19 6 2.1514 -2.6883 -2.5793 20 6 2.9412 -2.0205 -3.4948 21 6 3.2799 -0.6911 -3.2783 22 7 4.0788 -0.0130 -4.2018 23 6 2.8214 -0.0369 -2.1417 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.1839 0.6426 2.6225 28 1 1.1217 1.4663 3.5085 29 1 1.0271 1.5996 1.7361 30 1 1.4775 -0.8151 4.4613 31 1 2.3169 -2.0016 3.4336 32 1 5.8015 -0.6861 6.3043 33 1 1.0804 -2.5590 -0.7342 34 1 1.8879 -3.7222 -2.7468 35 1 3.2949 -2.5317 -4.3781 36 1 4.3974 -0.4705 -4.9957 37 1 4.3145 0.9155 -4.0498 38 1 3.0824 0.9971 -1.9708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235074320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:56 Heat of formation + Delta-G solvation = -30.872104 kcal Electronic energy + Delta-G solvation = -19655.764083 eV Core-core repulsion = 16690.063307 eV Total energy + Delta-G solvation = -2965.700775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29815 -39.80865 -36.66462 -36.02684 -34.81967 -34.02504 -31.15307 -30.02123 -28.99105 -27.59709 -25.65157 -24.32912 -23.23090 -22.05758 -19.89323 -19.13779 -18.05184 -17.80718 -17.30587 -17.04011 -16.58425 -16.40025 -15.72542 -15.11904 -14.98670 -14.59113 -14.42098 -14.23695 -14.06823 -13.87083 -13.64980 -13.34191 -13.16461 -12.90263 -12.62657 -12.50672 -12.27663 -12.09713 -12.02270 -11.75533 -11.64285 -11.31480 -10.83452 -10.51106 -9.63630 -9.34682 -8.34351 -8.33010 -6.39263 0.53133 0.79821 1.32147 1.36754 1.45094 1.85477 2.30895 2.36448 3.00127 3.03624 3.08796 3.63654 3.82587 4.08679 4.25462 4.28463 4.35762 4.45511 4.59486 4.65186 4.73087 4.79188 4.86727 4.89634 4.98244 5.02108 5.08313 5.16497 5.32297 5.43956 5.46526 5.64287 5.68862 5.87216 6.04973 6.24634 6.61885 6.66406 6.73712 7.07120 7.21762 7.46712 8.82886 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.005072 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.742543 B = 5519.076614 C = 5805.300703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.113 0.887 4 C 0.502 3.498 5 O -0.585 6.585 6 N -0.606 5.606 7 C 0.073 3.927 8 C 0.224 3.776 9 C -0.536 4.536 10 H 0.026 0.974 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.949 3.051 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.236 1.236 17 C -0.029 4.029 18 C -0.164 4.164 19 C -0.083 4.083 20 C -0.209 4.209 21 C 0.207 3.793 22 N -0.870 5.870 23 C -0.207 4.207 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.407 0.593 37 H 0.404 0.596 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 2.282 -17.404 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 H 0.131 0.869 4 C 0.291 3.709 5 O -0.465 6.465 6 N -0.338 5.338 7 C -0.069 4.069 8 C 0.101 3.899 9 C -0.574 4.574 10 H 0.045 0.955 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.772 3.228 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.030 4.030 18 C -0.184 4.184 19 C -0.102 4.102 20 C -0.231 4.231 21 C 0.102 3.898 22 N -0.410 5.410 23 C -0.229 4.229 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.236 0.764 37 H 0.233 0.767 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.711 1.773 -17.290 20.958 hybrid contribution 0.869 -0.360 0.640 1.138 sum -10.842 1.413 -16.649 19.919 Atomic orbital electron populations 1.22024 0.89632 1.03252 1.05000 1.20319 0.99705 0.99774 0.88709 0.86882 1.21172 0.79778 0.84620 0.85352 1.90648 1.39643 1.29221 1.86984 1.47904 1.50515 1.29746 1.05590 1.22165 0.94497 0.86470 1.03723 1.19325 0.93617 0.92748 0.84193 1.21580 1.05192 1.19190 1.11467 0.95533 1.25871 0.95035 0.99425 0.98448 1.70051 1.16684 1.44381 1.27604 0.85696 0.80774 0.78645 0.77714 1.20392 1.19881 1.15919 1.19233 0.95909 0.94260 0.93596 1.20707 1.04569 0.94672 0.98440 1.21073 0.95993 0.99904 0.93198 1.20798 1.05702 0.93762 1.02859 1.17803 0.90592 0.91813 0.89621 1.42356 1.57638 1.15572 1.25456 1.20590 1.04999 1.01077 0.96266 0.89062 0.89334 0.92824 0.89593 0.91647 0.89203 0.93023 0.96547 0.92283 0.88068 0.84662 0.84256 0.76363 0.76651 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.64 71.98 0.62 -2.46 16 2 C -0.06 -1.92 2.10 -12.29 -0.03 -1.95 16 3 H 0.11 2.99 7.13 -2.39 -0.02 2.98 16 4 C 0.50 21.15 6.94 87.66 0.61 21.76 16 5 O -0.58 -30.73 14.68 -3.02 -0.04 -30.77 16 6 N -0.61 -25.04 2.86 -851.12 -2.43 -27.47 16 7 C 0.07 2.07 8.80 127.77 1.12 3.20 16 8 C 0.22 11.14 4.23 85.63 0.36 11.50 16 9 C -0.54 -32.29 9.94 25.60 0.25 -32.03 16 10 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 11 C 0.01 0.60 5.47 84.66 0.46 1.06 16 12 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 13 Si 0.95 45.29 27.47 68.60 1.88 47.18 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 17 C -0.03 -0.91 4.39 -19.89 -0.09 -1.00 16 18 C -0.16 -5.29 7.93 22.29 0.18 -5.12 16 19 C -0.08 -2.30 10.04 22.25 0.22 -2.08 16 20 C -0.21 -5.17 9.90 22.40 0.22 -4.95 16 21 C 0.21 5.17 6.75 38.21 0.26 5.43 16 22 N -0.87 -14.82 9.09 -51.37 -0.47 -15.29 16 23 C -0.21 -5.83 9.52 22.40 0.21 -5.62 16 24 H 0.09 1.65 4.53 -2.39 -0.01 1.64 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.26 7.39 -2.39 -0.02 1.24 16 27 H 0.09 1.83 6.95 -2.39 -0.02 1.81 16 28 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 29 H 0.09 2.04 6.01 -2.39 -0.01 2.02 16 30 H 0.05 2.33 7.13 -2.39 -0.02 2.32 16 31 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 32 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.10 3.43 7.51 -2.91 -0.02 3.41 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.41 5.06 8.84 -92.71 -0.82 4.24 16 37 H 0.40 5.65 8.84 -92.71 -0.82 4.83 16 38 H 0.13 3.15 7.94 -2.91 -0.02 3.13 16 Total: -1.00 -81.62 311.27 3.05 -78.57 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.61 Total: 20.74 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.41 Total: -12.25 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -2.60 Total: -103.46 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.04 Total: -30.77 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.18 kcal Total: -81.62 3.05 -78.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235074320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.701 kcal (2) G-P(sol) polarization free energy of solvation -81.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds