Wall clock time and date at job start Mon Mar 30 2020 04:51:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47380 * 2 1
4 4 C 1.50709 * 109.47025 * 119.99971 * 2 1 3
5 5 H 1.08000 * 119.99759 * 119.72731 * 4 2 1
6 6 C 1.37877 * 119.99979 * 299.99891 * 4 2 1
7 7 N 1.31515 * 119.99830 * 179.72711 * 6 4 2
8 8 Si 1.86796 * 119.99852 * 359.72472 * 6 4 2
9 9 H 1.48498 * 109.47261 * 90.00482 * 8 6 4
10 10 H 1.48505 * 109.47212 * 210.00144 * 8 6 4
11 11 H 1.48500 * 109.47365 * 330.00145 * 8 6 4
12 12 N 1.46898 * 109.47053 * 239.99913 * 2 1 3
13 13 C 1.47841 * 111.00145 * 180.84423 * 12 2 1
14 14 C 1.54906 * 104.79785 * 213.63492 * 13 12 2
15 15 C 1.55139 * 101.65154 * 37.07061 * 14 13 12
16 16 H 1.08998 * 110.70658 * 82.72600 * 15 14 13
17 17 O 1.42904 * 110.85448 * 205.89655 * 15 14 13
18 18 C 1.35908 * 116.99684 * 269.77071 * 17 15 14
19 19 C 1.39141 * 120.47274 * 5.17381 * 18 17 15
20 20 C 1.38539 * 118.37340 * 179.75509 * 19 18 17
21 21 C 1.38259 * 119.21791 * 0.49901 * 20 19 18
22 22 N 1.31841 * 120.89099 * 359.76200 * 21 20 19
23 23 C 1.31841 * 121.77791 * 359.97438 * 22 21 20
24 24 C 1.47437 * 110.99983 * 59.99790 * 12 2 1
25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.46734 * 300.00080 * 1 2 3
27 27 H 1.08998 * 109.47052 * 60.00035 * 1 2 3
28 28 H 0.96999 * 119.99952 * 179.97438 * 7 6 4
29 29 H 1.09004 * 110.37331 * 332.46678 * 13 12 2
30 30 H 1.09005 * 110.37487 * 94.80412 * 13 12 2
31 31 H 1.08999 * 110.99468 * 278.97990 * 14 13 12
32 32 H 1.09004 * 111.02454 * 155.17409 * 14 13 12
33 33 H 1.07998 * 120.81535 * 359.97438 * 19 18 17
34 34 H 1.07997 * 120.39432 * 180.21611 * 20 19 18
35 35 H 1.08008 * 119.55892 * 179.74478 * 21 20 19
36 36 H 1.07998 * 119.66089 * 180.02562 * 23 22 21
37 37 H 1.09002 * 109.89391 * 242.66135 * 24 12 2
38 38 H 1.08997 * 109.89183 * 3.69548 * 24 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6496 -1.5911 1.1314
6 6 1.6993 -0.2394 2.4828
7 7 2.1332 -0.8625 3.5566
8 14 0.6317 1.2839 2.6541
9 1 -0.7978 0.8843 2.6968
10 1 0.9840 1.9968 3.9083
11 1 0.8603 2.1817 1.4935
12 7 2.0196 -0.6925 -1.1994
13 6 3.4974 -0.7299 -1.2235
14 6 3.8711 -0.6371 -2.7239
15 6 2.7947 0.3460 -3.2547
16 1 3.0897 1.3785 -3.0672
17 8 2.5562 0.1356 -4.6479
18 6 3.3159 0.8508 -5.5188
19 6 4.3478 1.6607 -5.0547
20 6 5.0979 2.3667 -5.9811
21 6 4.7925 2.2527 -7.3247
22 7 3.8043 1.4804 -7.7310
23 6 3.0700 0.7882 -6.8825
24 6 1.5469 -0.0240 -2.4255
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.8992 -0.5309 4.4376
29 1 3.9074 0.1195 -0.6770
30 1 3.8603 -1.6661 -0.7992
31 1 3.7847 -1.6095 -3.2088
32 1 4.8725 -0.2264 -2.8528
33 1 4.5611 1.7343 -3.9986
34 1 5.9088 3.0023 -5.6572
35 1 5.3711 2.8039 -8.0513
36 1 2.2689 0.1659 -7.2529
37 1 0.9105 -0.7011 -2.9954
38 1 0.9908 0.8768 -2.1659
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000246370812.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:09
Heat of formation + Delta-G solvation = 17.853309 kcal
Electronic energy + Delta-G solvation = -19590.566994 eV
Core-core repulsion = 16626.979111 eV
Total energy + Delta-G solvation = -2963.587883 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.81233 -39.11434 -37.37810 -33.68691 -32.38907 -31.58948 -30.53300 -28.45720
-28.16348 -25.09324 -23.99251 -23.28030 -21.71118 -20.80655 -19.45971 -18.57945
-17.00510 -16.82489 -16.71559 -15.84144 -15.18919 -14.88560 -14.38861 -14.06907
-13.72224 -13.57484 -13.45674 -13.33035 -12.69501 -12.57378 -12.34345 -12.13458
-11.82545 -11.39831 -11.20030 -10.78350 -10.61750 -10.53180 -10.47310 -10.20593
-9.95544 -9.76469 -9.56315 -9.18372 -8.64048 -8.53576 -7.52601 -6.14002
-4.13395 0.94773 1.07899 2.98367 3.20762 3.29293 3.32501 3.62152
4.32017 4.32756 4.44291 4.56631 4.59613 4.71955 4.85208 4.97280
5.02423 5.04152 5.18800 5.44524 5.58861 5.65499 5.80052 5.85506
5.90602 5.97464 6.07059 6.21525 6.33272 6.35819 6.37483 6.43975
6.62055 6.70758 7.13242 7.19891 7.45924 7.77623 7.79737 7.87388
8.54733 8.92749 9.47437 10.98860
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.039070 B = 0.004189 C = 0.004166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.484883 B = 6682.589927 C = 6718.933092
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.176 3.824
3 H -0.001 1.001
4 C -0.508 4.508
5 H 0.082 0.918
6 C 0.071 3.929
7 N -0.897 5.897
8 Si 0.886 3.114
9 H -0.277 1.277
10 H -0.296 1.296
11 H -0.270 1.270
12 N -0.507 5.507
13 C 0.063 3.937
14 C -0.153 4.153
15 C 0.059 3.941
16 H 0.078 0.922
17 O -0.294 6.294
18 C 0.091 3.909
19 C -0.169 4.169
20 C -0.130 4.130
21 C 0.049 3.951
22 N -0.449 5.449
23 C 0.068 3.932
24 C 0.047 3.953
25 H 0.062 0.938
26 H 0.042 0.958
27 H 0.029 0.971
28 H 0.265 0.735
29 H 0.051 0.949
30 H 0.084 0.916
31 H 0.085 0.915
32 H 0.070 0.930
33 H 0.141 0.859
34 H 0.136 0.864
35 H 0.156 0.844
36 H 0.163 0.837
37 H 0.083 0.917
38 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.151 6.143 -17.099 18.637
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.068 3.932
3 H 0.017 0.983
4 C -0.546 4.546
5 H 0.100 0.900
6 C -0.131 4.131
7 N -0.535 5.535
8 Si 0.716 3.284
9 H -0.204 1.204
10 H -0.224 1.224
11 H -0.196 1.196
12 N -0.232 5.232
13 C -0.065 4.065
14 C -0.191 4.191
15 C 0.002 3.998
16 H 0.095 0.905
17 O -0.205 6.205
18 C 0.042 3.958
19 C -0.195 4.195
20 C -0.150 4.150
21 C -0.108 4.108
22 N -0.158 5.158
23 C -0.091 4.091
24 C -0.082 4.082
25 H 0.082 0.918
26 H 0.061 0.939
27 H 0.048 0.952
28 H 0.075 0.925
29 H 0.070 0.930
30 H 0.103 0.897
31 H 0.103 0.897
32 H 0.089 0.911
33 H 0.159 0.841
34 H 0.154 0.846
35 H 0.173 0.827
36 H 0.180 0.820
37 H 0.102 0.898
38 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 3.610 5.431 -17.768 18.927
hybrid contribution 0.050 1.874 1.405 2.343
sum 3.660 7.305 -16.363 18.290
Atomic orbital electron populations
1.22223 0.98293 1.01607 0.98368 1.19944 0.91763 0.92477 0.88975
0.98341 1.20919 1.32285 1.13591 0.87780 0.89971 1.24917 0.95745
0.96614 0.95795 1.69874 1.45622 1.40091 0.97915 0.86891 0.80874
0.83766 0.76845 1.20403 1.22392 1.19566 1.63681 1.08046 1.50592
1.00894 1.22740 0.88649 1.02609 0.92465 1.23314 0.97506 1.00210
0.98049 1.23995 0.98664 0.99396 0.77761 0.90457 1.86164 1.57171
1.60562 1.16635 1.20265 0.91465 0.92200 0.91863 1.21847 0.96901
0.99300 1.01457 1.22011 0.99834 0.99156 0.93982 1.22617 0.95803
0.97987 0.94414 1.67696 1.04880 1.05420 1.37841 1.22222 1.00336
1.00035 0.86528 1.22889 0.94768 0.98853 0.91642 0.91846 0.93909
0.95185 0.92531 0.93035 0.89732 0.89685 0.91106 0.84122 0.84605
0.82692 0.81995 0.89832 0.92101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.16 8.55 37.16 0.32 -2.84 16
2 C 0.18 4.02 1.24 -68.86 -0.09 3.94 16
3 H 0.00 -0.02 7.15 -51.93 -0.37 -0.39 16
4 C -0.51 -13.77 8.65 -34.44 -0.30 -14.07 16
5 H 0.08 2.43 7.47 -52.49 -0.39 2.04 16
6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16
7 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16
8 Si 0.89 21.40 24.38 -169.99 -4.14 17.25 16
9 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16
10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16
11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16
12 N -0.51 -10.03 5.02 -224.68 -1.13 -11.16 16
13 C 0.06 1.12 5.68 -2.30 -0.01 1.11 16
14 C -0.15 -2.15 6.65 -24.59 -0.16 -2.31 16
15 C 0.06 0.83 2.73 -24.91 -0.07 0.76 16
16 H 0.08 1.02 6.28 -51.93 -0.33 0.69 16
17 O -0.29 -4.06 9.88 -19.45 -0.19 -4.25 16
18 C 0.09 1.13 6.70 -39.07 -0.26 0.87 16
19 C -0.17 -1.87 9.02 -39.14 -0.35 -2.22 16
20 C -0.13 -1.22 10.11 -39.46 -0.40 -1.62 16
21 C 0.05 0.48 11.18 -17.54 -0.20 0.29 16
22 N -0.45 -5.43 10.36 -13.12 -0.14 -5.56 16
23 C 0.07 0.81 11.14 -17.37 -0.19 0.62 16
24 C 0.05 0.77 5.92 -2.84 -0.02 0.76 16
25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16
26 H 0.04 0.95 3.29 -51.93 -0.17 0.78 16
27 H 0.03 0.55 6.50 -51.93 -0.34 0.21 16
28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
29 H 0.05 0.96 7.77 -51.93 -0.40 0.56 16
30 H 0.08 1.58 7.90 -51.93 -0.41 1.17 16
31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
32 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16
33 H 0.14 1.45 5.78 -52.49 -0.30 1.15 16
34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16
35 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16
36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16
37 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16
38 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16
LS Contribution 300.20 15.07 4.52 4.52
Total: -1.00 -30.09 300.20 -7.29 -37.39
By element:
Atomic # 1 Polarization: 5.79 SS G_CDS: -5.16 Total: 0.63 kcal
Atomic # 6 Polarization: -10.99 SS G_CDS: -1.83 Total: -12.82 kcal
Atomic # 7 Polarization: -42.23 SS G_CDS: -0.49 Total: -42.72 kcal
Atomic # 8 Polarization: -4.06 SS G_CDS: -0.19 Total: -4.25 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -30.09 -7.29 -37.39 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246370812.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.238 kcal
(2) G-P(sol) polarization free energy of solvation -30.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds