Wall clock time and date at job start Mon Mar 30 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47380 * 2 1 4 4 C 1.50709 * 109.47025 * 119.99971 * 2 1 3 5 5 H 1.08000 * 119.99759 * 119.72731 * 4 2 1 6 6 C 1.37877 * 119.99979 * 299.99891 * 4 2 1 7 7 N 1.31515 * 119.99830 * 179.72711 * 6 4 2 8 8 Si 1.86796 * 119.99852 * 359.72472 * 6 4 2 9 9 H 1.48498 * 109.47261 * 90.00482 * 8 6 4 10 10 H 1.48505 * 109.47212 * 210.00144 * 8 6 4 11 11 H 1.48500 * 109.47365 * 330.00145 * 8 6 4 12 12 N 1.46898 * 109.47053 * 239.99913 * 2 1 3 13 13 C 1.47841 * 111.00145 * 180.84423 * 12 2 1 14 14 C 1.54906 * 104.79785 * 213.63492 * 13 12 2 15 15 C 1.55139 * 101.65154 * 37.07061 * 14 13 12 16 16 H 1.08998 * 110.70658 * 82.72600 * 15 14 13 17 17 O 1.42904 * 110.85448 * 205.89655 * 15 14 13 18 18 C 1.35908 * 116.99684 * 269.77071 * 17 15 14 19 19 C 1.39141 * 120.47274 * 5.17381 * 18 17 15 20 20 C 1.38539 * 118.37340 * 179.75509 * 19 18 17 21 21 C 1.38259 * 119.21791 * 0.49901 * 20 19 18 22 22 N 1.31841 * 120.89099 * 359.76200 * 21 20 19 23 23 C 1.31841 * 121.77791 * 359.97438 * 22 21 20 24 24 C 1.47437 * 110.99983 * 59.99790 * 12 2 1 25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46734 * 300.00080 * 1 2 3 27 27 H 1.08998 * 109.47052 * 60.00035 * 1 2 3 28 28 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 29 29 H 1.09004 * 110.37331 * 332.46678 * 13 12 2 30 30 H 1.09005 * 110.37487 * 94.80412 * 13 12 2 31 31 H 1.08999 * 110.99468 * 278.97990 * 14 13 12 32 32 H 1.09004 * 111.02454 * 155.17409 * 14 13 12 33 33 H 1.07998 * 120.81535 * 359.97438 * 19 18 17 34 34 H 1.07997 * 120.39432 * 180.21611 * 20 19 18 35 35 H 1.08008 * 119.55892 * 179.74478 * 21 20 19 36 36 H 1.07998 * 119.66089 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.89391 * 242.66135 * 24 12 2 38 38 H 1.08997 * 109.89183 * 3.69548 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6496 -1.5911 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1332 -0.8625 3.5566 8 14 0.6317 1.2839 2.6541 9 1 -0.7978 0.8843 2.6968 10 1 0.9840 1.9968 3.9083 11 1 0.8603 2.1817 1.4935 12 7 2.0196 -0.6925 -1.1994 13 6 3.4974 -0.7299 -1.2235 14 6 3.8711 -0.6371 -2.7239 15 6 2.7947 0.3460 -3.2547 16 1 3.0897 1.3785 -3.0672 17 8 2.5562 0.1356 -4.6479 18 6 3.3159 0.8508 -5.5188 19 6 4.3478 1.6607 -5.0547 20 6 5.0979 2.3667 -5.9811 21 6 4.7925 2.2527 -7.3247 22 7 3.8043 1.4804 -7.7310 23 6 3.0700 0.7882 -6.8825 24 6 1.5469 -0.0240 -2.4255 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8992 -0.5309 4.4376 29 1 3.9074 0.1195 -0.6770 30 1 3.8603 -1.6661 -0.7992 31 1 3.7847 -1.6095 -3.2088 32 1 4.8725 -0.2264 -2.8528 33 1 4.5611 1.7343 -3.9986 34 1 5.9088 3.0023 -5.6572 35 1 5.3711 2.8039 -8.0513 36 1 2.2689 0.1659 -7.2529 37 1 0.9105 -0.7011 -2.9954 38 1 0.9908 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246370812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:09 Heat of formation + Delta-G solvation = 17.853309 kcal Electronic energy + Delta-G solvation = -19590.566994 eV Core-core repulsion = 16626.979111 eV Total energy + Delta-G solvation = -2963.587883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81233 -39.11434 -37.37810 -33.68691 -32.38907 -31.58948 -30.53300 -28.45720 -28.16348 -25.09324 -23.99251 -23.28030 -21.71118 -20.80655 -19.45971 -18.57945 -17.00510 -16.82489 -16.71559 -15.84144 -15.18919 -14.88560 -14.38861 -14.06907 -13.72224 -13.57484 -13.45674 -13.33035 -12.69501 -12.57378 -12.34345 -12.13458 -11.82545 -11.39831 -11.20030 -10.78350 -10.61750 -10.53180 -10.47310 -10.20593 -9.95544 -9.76469 -9.56315 -9.18372 -8.64048 -8.53576 -7.52601 -6.14002 -4.13395 0.94773 1.07899 2.98367 3.20762 3.29293 3.32501 3.62152 4.32017 4.32756 4.44291 4.56631 4.59613 4.71955 4.85208 4.97280 5.02423 5.04152 5.18800 5.44524 5.58861 5.65499 5.80052 5.85506 5.90602 5.97464 6.07059 6.21525 6.33272 6.35819 6.37483 6.43975 6.62055 6.70758 7.13242 7.19891 7.45924 7.77623 7.79737 7.87388 8.54733 8.92749 9.47437 10.98860 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039070 B = 0.004189 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.484883 B = 6682.589927 C = 6718.933092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H -0.001 1.001 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.507 5.507 13 C 0.063 3.937 14 C -0.153 4.153 15 C 0.059 3.941 16 H 0.078 0.922 17 O -0.294 6.294 18 C 0.091 3.909 19 C -0.169 4.169 20 C -0.130 4.130 21 C 0.049 3.951 22 N -0.449 5.449 23 C 0.068 3.932 24 C 0.047 3.953 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.083 0.917 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 6.143 -17.099 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 H 0.017 0.983 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.232 5.232 13 C -0.065 4.065 14 C -0.191 4.191 15 C 0.002 3.998 16 H 0.095 0.905 17 O -0.205 6.205 18 C 0.042 3.958 19 C -0.195 4.195 20 C -0.150 4.150 21 C -0.108 4.108 22 N -0.158 5.158 23 C -0.091 4.091 24 C -0.082 4.082 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.102 0.898 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.610 5.431 -17.768 18.927 hybrid contribution 0.050 1.874 1.405 2.343 sum 3.660 7.305 -16.363 18.290 Atomic orbital electron populations 1.22223 0.98293 1.01607 0.98368 1.19944 0.91763 0.92477 0.88975 0.98341 1.20919 1.32285 1.13591 0.87780 0.89971 1.24917 0.95745 0.96614 0.95795 1.69874 1.45622 1.40091 0.97915 0.86891 0.80874 0.83766 0.76845 1.20403 1.22392 1.19566 1.63681 1.08046 1.50592 1.00894 1.22740 0.88649 1.02609 0.92465 1.23314 0.97506 1.00210 0.98049 1.23995 0.98664 0.99396 0.77761 0.90457 1.86164 1.57171 1.60562 1.16635 1.20265 0.91465 0.92200 0.91863 1.21847 0.96901 0.99300 1.01457 1.22011 0.99834 0.99156 0.93982 1.22617 0.95803 0.97987 0.94414 1.67696 1.04880 1.05420 1.37841 1.22222 1.00336 1.00035 0.86528 1.22889 0.94768 0.98853 0.91642 0.91846 0.93909 0.95185 0.92531 0.93035 0.89732 0.89685 0.91106 0.84122 0.84605 0.82692 0.81995 0.89832 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.55 37.16 0.32 -2.84 16 2 C 0.18 4.02 1.24 -68.86 -0.09 3.94 16 3 H 0.00 -0.02 7.15 -51.93 -0.37 -0.39 16 4 C -0.51 -13.77 8.65 -34.44 -0.30 -14.07 16 5 H 0.08 2.43 7.47 -52.49 -0.39 2.04 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 8 Si 0.89 21.40 24.38 -169.99 -4.14 17.25 16 9 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.51 -10.03 5.02 -224.68 -1.13 -11.16 16 13 C 0.06 1.12 5.68 -2.30 -0.01 1.11 16 14 C -0.15 -2.15 6.65 -24.59 -0.16 -2.31 16 15 C 0.06 0.83 2.73 -24.91 -0.07 0.76 16 16 H 0.08 1.02 6.28 -51.93 -0.33 0.69 16 17 O -0.29 -4.06 9.88 -19.45 -0.19 -4.25 16 18 C 0.09 1.13 6.70 -39.07 -0.26 0.87 16 19 C -0.17 -1.87 9.02 -39.14 -0.35 -2.22 16 20 C -0.13 -1.22 10.11 -39.46 -0.40 -1.62 16 21 C 0.05 0.48 11.18 -17.54 -0.20 0.29 16 22 N -0.45 -5.43 10.36 -13.12 -0.14 -5.56 16 23 C 0.07 0.81 11.14 -17.37 -0.19 0.62 16 24 C 0.05 0.77 5.92 -2.84 -0.02 0.76 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.95 3.29 -51.93 -0.17 0.78 16 27 H 0.03 0.55 6.50 -51.93 -0.34 0.21 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.05 0.96 7.77 -51.93 -0.40 0.56 16 30 H 0.08 1.58 7.90 -51.93 -0.41 1.17 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 33 H 0.14 1.45 5.78 -52.49 -0.30 1.15 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 38 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -30.09 300.20 -7.29 -37.39 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.16 Total: 0.63 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.83 Total: -12.82 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.49 Total: -42.72 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.19 Total: -4.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.09 -7.29 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246370812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.238 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds