Wall clock time and date at job start Mon Mar 30 2020 04:51:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47380 * 2 1
4 4 C 1.50709 * 109.47025 * 119.99971 * 2 1 3
5 5 H 1.08000 * 119.99759 * 119.72731 * 4 2 1
6 6 C 1.37877 * 119.99979 * 299.99891 * 4 2 1
7 7 N 1.31515 * 119.99830 * 179.72711 * 6 4 2
8 8 Si 1.86796 * 119.99852 * 359.72472 * 6 4 2
9 9 H 1.48498 * 109.47261 * 90.00482 * 8 6 4
10 10 H 1.48505 * 109.47212 * 210.00144 * 8 6 4
11 11 H 1.48500 * 109.47365 * 330.00145 * 8 6 4
12 12 N 1.46898 * 109.47053 * 239.99913 * 2 1 3
13 13 C 1.47841 * 111.00145 * 180.84423 * 12 2 1
14 14 C 1.54906 * 104.79785 * 213.63492 * 13 12 2
15 15 C 1.55139 * 101.65154 * 37.07061 * 14 13 12
16 16 H 1.08998 * 110.70658 * 82.72600 * 15 14 13
17 17 O 1.42904 * 110.85448 * 205.89655 * 15 14 13
18 18 C 1.35908 * 116.99684 * 269.77071 * 17 15 14
19 19 C 1.39141 * 120.47274 * 5.17381 * 18 17 15
20 20 C 1.38539 * 118.37340 * 179.75509 * 19 18 17
21 21 C 1.38259 * 119.21791 * 0.49901 * 20 19 18
22 22 N 1.31841 * 120.89099 * 359.76200 * 21 20 19
23 23 C 1.31841 * 121.77791 * 359.97438 * 22 21 20
24 24 C 1.47437 * 110.99983 * 59.99790 * 12 2 1
25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.46734 * 300.00080 * 1 2 3
27 27 H 1.08998 * 109.47052 * 60.00035 * 1 2 3
28 28 H 0.96999 * 119.99952 * 179.97438 * 7 6 4
29 29 H 1.09004 * 110.37331 * 332.46678 * 13 12 2
30 30 H 1.09005 * 110.37487 * 94.80412 * 13 12 2
31 31 H 1.08999 * 110.99468 * 278.97990 * 14 13 12
32 32 H 1.09004 * 111.02454 * 155.17409 * 14 13 12
33 33 H 1.07998 * 120.81535 * 359.97438 * 19 18 17
34 34 H 1.07997 * 120.39432 * 180.21611 * 20 19 18
35 35 H 1.08008 * 119.55892 * 179.74478 * 21 20 19
36 36 H 1.07998 * 119.66089 * 180.02562 * 23 22 21
37 37 H 1.09002 * 109.89391 * 242.66135 * 24 12 2
38 38 H 1.08997 * 109.89183 * 3.69548 * 24 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6496 -1.5911 1.1314
6 6 1.6993 -0.2394 2.4828
7 7 2.1332 -0.8625 3.5566
8 14 0.6317 1.2839 2.6541
9 1 -0.7978 0.8843 2.6968
10 1 0.9840 1.9968 3.9083
11 1 0.8603 2.1817 1.4935
12 7 2.0196 -0.6925 -1.1994
13 6 3.4974 -0.7299 -1.2235
14 6 3.8711 -0.6371 -2.7239
15 6 2.7947 0.3460 -3.2547
16 1 3.0897 1.3785 -3.0672
17 8 2.5562 0.1356 -4.6479
18 6 3.3159 0.8508 -5.5188
19 6 4.3478 1.6607 -5.0547
20 6 5.0979 2.3667 -5.9811
21 6 4.7925 2.2527 -7.3247
22 7 3.8043 1.4804 -7.7310
23 6 3.0700 0.7882 -6.8825
24 6 1.5469 -0.0240 -2.4255
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.8992 -0.5309 4.4376
29 1 3.9074 0.1195 -0.6770
30 1 3.8603 -1.6661 -0.7992
31 1 3.7847 -1.6095 -3.2088
32 1 4.8725 -0.2264 -2.8528
33 1 4.5611 1.7343 -3.9986
34 1 5.9088 3.0023 -5.6572
35 1 5.3711 2.8039 -8.0513
36 1 2.2689 0.1659 -7.2529
37 1 0.9105 -0.7011 -2.9954
38 1 0.9908 0.8768 -2.1659
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000246370812.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:09
Heat of formation + Delta-G solvation = -3.497888 kcal
Electronic energy + Delta-G solvation = -19591.492851 eV
Core-core repulsion = 16626.979111 eV
Total energy + Delta-G solvation = -2964.513740 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.73530 -40.27504 -38.60186 -35.45496 -33.44792 -33.17676 -31.47839 -29.88180
-29.52099 -26.96451 -24.97428 -24.16480 -23.18949 -22.03598 -21.03601 -19.55443
-18.79684 -17.92117 -17.65924 -17.29444 -16.41276 -15.99911 -15.82979 -15.22230
-15.05526 -14.94192 -14.62230 -14.47158 -14.28067 -14.16046 -13.70810 -13.32828
-12.89085 -12.84841 -12.76961 -12.50081 -12.18826 -12.09111 -11.82931 -11.68905
-11.42045 -11.15280 -10.75998 -10.74524 -10.57636 -9.42145 -9.08438 -8.29585
-6.33356 0.15860 0.25066 1.30430 1.33853 1.44234 1.97273 2.30378
2.81262 3.03774 3.14036 3.45526 3.57640 3.64711 3.70405 3.84136
3.93338 4.15936 4.19883 4.34542 4.44692 4.48951 4.55093 4.62613
4.69338 4.76395 4.79915 4.89044 4.97865 5.04567 5.08611 5.11368
5.12899 5.39061 5.51335 5.62649 5.98152 6.21153 6.25761 6.60156
6.73513 6.97233 7.31754 8.86988
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.039070 B = 0.004189 C = 0.004166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.484883 B = 6682.589927 C = 6718.933092
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.180 3.820
3 H -0.002 1.002
4 C -0.508 4.508
5 H 0.040 0.960
6 C 0.014 3.986
7 N -0.947 5.947
8 Si 0.948 3.052
9 H -0.266 1.266
10 H -0.298 1.298
11 H -0.249 1.249
12 N -0.525 5.525
13 C 0.061 3.939
14 C -0.137 4.137
15 C 0.070 3.930
16 H 0.092 0.908
17 O -0.303 6.303
18 C 0.070 3.930
19 C -0.173 4.173
20 C -0.124 4.124
21 C 0.048 3.952
22 N -0.471 5.471
23 C 0.056 3.944
24 C 0.045 3.955
25 H 0.054 0.946
26 H 0.036 0.964
27 H 0.064 0.936
28 H 0.266 0.734
29 H 0.040 0.960
30 H 0.063 0.937
31 H 0.083 0.917
32 H 0.096 0.904
33 H 0.149 0.851
34 H 0.168 0.832
35 H 0.185 0.815
36 H 0.169 0.831
37 H 0.087 0.913
38 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.184 8.433 -19.155 21.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.072 3.928
3 H 0.015 0.985
4 C -0.546 4.546
5 H 0.058 0.942
6 C -0.183 4.183
7 N -0.587 5.587
8 Si 0.775 3.225
9 H -0.192 1.192
10 H -0.226 1.226
11 H -0.173 1.173
12 N -0.250 5.250
13 C -0.067 4.067
14 C -0.175 4.175
15 C 0.013 3.987
16 H 0.110 0.890
17 O -0.215 6.215
18 C 0.022 3.978
19 C -0.200 4.200
20 C -0.144 4.144
21 C -0.109 4.109
22 N -0.181 5.181
23 C -0.102 4.102
24 C -0.083 4.083
25 H 0.073 0.927
26 H 0.054 0.946
27 H 0.083 0.917
28 H 0.075 0.925
29 H 0.059 0.941
30 H 0.081 0.919
31 H 0.101 0.899
32 H 0.114 0.886
33 H 0.167 0.833
34 H 0.186 0.814
35 H 0.202 0.798
36 H 0.186 0.814
37 H 0.105 0.895
38 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 3.637 7.714 -19.866 21.619
hybrid contribution 0.158 1.106 1.943 2.241
sum 3.795 8.820 -17.923 20.333
Atomic orbital electron populations
1.22142 0.96829 1.01547 0.99686 1.19759 0.92828 0.91755 0.88469
0.98456 1.21162 1.31194 1.12309 0.89976 0.94185 1.25760 0.97283
0.99961 0.95345 1.70030 1.47769 1.42360 0.98583 0.85873 0.79319
0.80035 0.77292 1.19216 1.22606 1.17318 1.63523 1.09154 1.51139
1.01216 1.22679 0.87803 1.01031 0.95170 1.23194 0.98965 1.00602
0.94747 1.23743 0.96972 0.99895 0.78082 0.89038 1.86125 1.57866
1.61275 1.16243 1.20384 0.92378 0.93266 0.91761 1.22061 0.96594
0.99045 1.02283 1.22369 0.99978 0.98618 0.93412 1.23203 0.95063
0.97101 0.95565 1.67740 1.05834 1.06259 1.38232 1.22370 1.00803
1.00425 0.86584 1.22865 0.95963 0.98911 0.90518 0.92713 0.94566
0.91725 0.92498 0.94111 0.91881 0.89852 0.88585 0.83322 0.81421
0.79829 0.81427 0.89514 0.91465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.92 8.55 71.98 0.62 -5.31 16
2 C 0.18 8.11 1.24 44.17 0.05 8.17 16
3 H 0.00 -0.09 7.15 -2.39 -0.02 -0.11 16
4 C -0.51 -28.29 8.65 25.60 0.22 -28.07 16
5 H 0.04 2.50 7.47 -2.91 -0.02 2.48 16
6 C 0.01 0.79 5.45 84.65 0.46 1.26 16
7 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16
8 Si 0.95 43.72 24.38 68.60 1.67 45.40 16
9 H -0.27 -11.74 6.86 99.48 0.68 -11.06 16
10 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16
11 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16
12 N -0.52 -20.57 5.02 -864.74 -4.34 -24.91 16
13 C 0.06 2.18 5.68 86.77 0.49 2.67 16
14 C -0.14 -3.64 6.65 31.98 0.21 -3.43 16
15 C 0.07 1.83 2.73 31.78 0.09 1.92 16
16 H 0.09 2.13 6.28 -2.39 -0.01 2.12 16
17 O -0.30 -7.79 9.88 -92.51 -0.91 -8.70 16
18 C 0.07 1.61 6.70 22.60 0.15 1.76 16
19 C -0.17 -3.33 9.02 22.56 0.20 -3.13 16
20 C -0.12 -1.89 10.11 22.35 0.23 -1.66 16
21 C 0.05 0.80 11.18 84.70 0.95 1.74 16
22 N -0.47 -10.43 10.36 -195.43 -2.02 -12.45 16
23 C 0.06 1.26 11.14 84.80 0.94 2.21 16
24 C 0.05 1.41 5.92 86.65 0.51 1.92 16
25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16
26 H 0.04 1.52 3.29 -2.39 -0.01 1.51 16
27 H 0.06 2.18 6.50 -2.39 -0.02 2.16 16
28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16
29 H 0.04 1.53 7.77 -2.38 -0.02 1.51 16
30 H 0.06 2.48 7.90 -2.38 -0.02 2.46 16
31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
32 H 0.10 2.08 7.81 -2.38 -0.02 2.06 16
33 H 0.15 2.56 5.78 -2.91 -0.02 2.54 16
34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16
35 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16
36 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16
37 H 0.09 2.64 8.06 -2.39 -0.02 2.62 16
38 H 0.07 2.01 6.34 -2.39 -0.02 1.99 16
Total: -1.00 -66.44 300.20 0.80 -65.65
By element:
Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 12.99 kcal
Atomic # 6 Polarization: -25.08 SS G_CDS: 5.13 Total: -19.95 kcal
Atomic # 7 Polarization: -89.32 SS G_CDS: -6.07 Total: -95.38 kcal
Atomic # 8 Polarization: -7.79 SS G_CDS: -0.91 Total: -8.70 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.40 kcal
Total: -66.44 0.80 -65.65 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246370812.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.147 kcal
(2) G-P(sol) polarization free energy of solvation -66.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.498 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds