Wall clock time and date at job start Mon Mar 30 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47380 * 2 1 4 4 C 1.50709 * 109.47025 * 119.99971 * 2 1 3 5 5 H 1.08000 * 119.99759 * 119.72731 * 4 2 1 6 6 C 1.37877 * 119.99979 * 299.99891 * 4 2 1 7 7 N 1.31515 * 119.99830 * 179.72711 * 6 4 2 8 8 Si 1.86796 * 119.99852 * 359.72472 * 6 4 2 9 9 H 1.48498 * 109.47261 * 90.00482 * 8 6 4 10 10 H 1.48505 * 109.47212 * 210.00144 * 8 6 4 11 11 H 1.48500 * 109.47365 * 330.00145 * 8 6 4 12 12 N 1.46898 * 109.47053 * 239.99913 * 2 1 3 13 13 C 1.47841 * 111.00145 * 180.84423 * 12 2 1 14 14 C 1.54906 * 104.79785 * 213.63492 * 13 12 2 15 15 C 1.55139 * 101.65154 * 37.07061 * 14 13 12 16 16 H 1.08998 * 110.70658 * 82.72600 * 15 14 13 17 17 O 1.42904 * 110.85448 * 205.89655 * 15 14 13 18 18 C 1.35908 * 116.99684 * 269.77071 * 17 15 14 19 19 C 1.39141 * 120.47274 * 5.17381 * 18 17 15 20 20 C 1.38539 * 118.37340 * 179.75509 * 19 18 17 21 21 C 1.38259 * 119.21791 * 0.49901 * 20 19 18 22 22 N 1.31841 * 120.89099 * 359.76200 * 21 20 19 23 23 C 1.31841 * 121.77791 * 359.97438 * 22 21 20 24 24 C 1.47437 * 110.99983 * 59.99790 * 12 2 1 25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46734 * 300.00080 * 1 2 3 27 27 H 1.08998 * 109.47052 * 60.00035 * 1 2 3 28 28 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 29 29 H 1.09004 * 110.37331 * 332.46678 * 13 12 2 30 30 H 1.09005 * 110.37487 * 94.80412 * 13 12 2 31 31 H 1.08999 * 110.99468 * 278.97990 * 14 13 12 32 32 H 1.09004 * 111.02454 * 155.17409 * 14 13 12 33 33 H 1.07998 * 120.81535 * 359.97438 * 19 18 17 34 34 H 1.07997 * 120.39432 * 180.21611 * 20 19 18 35 35 H 1.08008 * 119.55892 * 179.74478 * 21 20 19 36 36 H 1.07998 * 119.66089 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.89391 * 242.66135 * 24 12 2 38 38 H 1.08997 * 109.89183 * 3.69548 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6496 -1.5911 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1332 -0.8625 3.5566 8 14 0.6317 1.2839 2.6541 9 1 -0.7978 0.8843 2.6968 10 1 0.9840 1.9968 3.9083 11 1 0.8603 2.1817 1.4935 12 7 2.0196 -0.6925 -1.1994 13 6 3.4974 -0.7299 -1.2235 14 6 3.8711 -0.6371 -2.7239 15 6 2.7947 0.3460 -3.2547 16 1 3.0897 1.3785 -3.0672 17 8 2.5562 0.1356 -4.6479 18 6 3.3159 0.8508 -5.5188 19 6 4.3478 1.6607 -5.0547 20 6 5.0979 2.3667 -5.9811 21 6 4.7925 2.2527 -7.3247 22 7 3.8043 1.4804 -7.7310 23 6 3.0700 0.7882 -6.8825 24 6 1.5469 -0.0240 -2.4255 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8992 -0.5309 4.4376 29 1 3.9074 0.1195 -0.6770 30 1 3.8603 -1.6661 -0.7992 31 1 3.7847 -1.6095 -3.2088 32 1 4.8725 -0.2264 -2.8528 33 1 4.5611 1.7343 -3.9986 34 1 5.9088 3.0023 -5.6572 35 1 5.3711 2.8039 -8.0513 36 1 2.2689 0.1659 -7.2529 37 1 0.9105 -0.7011 -2.9954 38 1 0.9908 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246370812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:09 Heat of formation + Delta-G solvation = -3.497888 kcal Electronic energy + Delta-G solvation = -19591.492851 eV Core-core repulsion = 16626.979111 eV Total energy + Delta-G solvation = -2964.513740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.73530 -40.27504 -38.60186 -35.45496 -33.44792 -33.17676 -31.47839 -29.88180 -29.52099 -26.96451 -24.97428 -24.16480 -23.18949 -22.03598 -21.03601 -19.55443 -18.79684 -17.92117 -17.65924 -17.29444 -16.41276 -15.99911 -15.82979 -15.22230 -15.05526 -14.94192 -14.62230 -14.47158 -14.28067 -14.16046 -13.70810 -13.32828 -12.89085 -12.84841 -12.76961 -12.50081 -12.18826 -12.09111 -11.82931 -11.68905 -11.42045 -11.15280 -10.75998 -10.74524 -10.57636 -9.42145 -9.08438 -8.29585 -6.33356 0.15860 0.25066 1.30430 1.33853 1.44234 1.97273 2.30378 2.81262 3.03774 3.14036 3.45526 3.57640 3.64711 3.70405 3.84136 3.93338 4.15936 4.19883 4.34542 4.44692 4.48951 4.55093 4.62613 4.69338 4.76395 4.79915 4.89044 4.97865 5.04567 5.08611 5.11368 5.12899 5.39061 5.51335 5.62649 5.98152 6.21153 6.25761 6.60156 6.73513 6.97233 7.31754 8.86988 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039070 B = 0.004189 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.484883 B = 6682.589927 C = 6718.933092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 H -0.002 1.002 4 C -0.508 4.508 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.249 1.249 12 N -0.525 5.525 13 C 0.061 3.939 14 C -0.137 4.137 15 C 0.070 3.930 16 H 0.092 0.908 17 O -0.303 6.303 18 C 0.070 3.930 19 C -0.173 4.173 20 C -0.124 4.124 21 C 0.048 3.952 22 N -0.471 5.471 23 C 0.056 3.944 24 C 0.045 3.955 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.266 0.734 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.169 0.831 37 H 0.087 0.913 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 8.433 -19.155 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.072 3.928 3 H 0.015 0.985 4 C -0.546 4.546 5 H 0.058 0.942 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.173 1.173 12 N -0.250 5.250 13 C -0.067 4.067 14 C -0.175 4.175 15 C 0.013 3.987 16 H 0.110 0.890 17 O -0.215 6.215 18 C 0.022 3.978 19 C -0.200 4.200 20 C -0.144 4.144 21 C -0.109 4.109 22 N -0.181 5.181 23 C -0.102 4.102 24 C -0.083 4.083 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.186 0.814 37 H 0.105 0.895 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.637 7.714 -19.866 21.619 hybrid contribution 0.158 1.106 1.943 2.241 sum 3.795 8.820 -17.923 20.333 Atomic orbital electron populations 1.22142 0.96829 1.01547 0.99686 1.19759 0.92828 0.91755 0.88469 0.98456 1.21162 1.31194 1.12309 0.89976 0.94185 1.25760 0.97283 0.99961 0.95345 1.70030 1.47769 1.42360 0.98583 0.85873 0.79319 0.80035 0.77292 1.19216 1.22606 1.17318 1.63523 1.09154 1.51139 1.01216 1.22679 0.87803 1.01031 0.95170 1.23194 0.98965 1.00602 0.94747 1.23743 0.96972 0.99895 0.78082 0.89038 1.86125 1.57866 1.61275 1.16243 1.20384 0.92378 0.93266 0.91761 1.22061 0.96594 0.99045 1.02283 1.22369 0.99978 0.98618 0.93412 1.23203 0.95063 0.97101 0.95565 1.67740 1.05834 1.06259 1.38232 1.22370 1.00803 1.00425 0.86584 1.22865 0.95963 0.98911 0.90518 0.92713 0.94566 0.91725 0.92498 0.94111 0.91881 0.89852 0.88585 0.83322 0.81421 0.79829 0.81427 0.89514 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.55 71.98 0.62 -5.31 16 2 C 0.18 8.11 1.24 44.17 0.05 8.17 16 3 H 0.00 -0.09 7.15 -2.39 -0.02 -0.11 16 4 C -0.51 -28.29 8.65 25.60 0.22 -28.07 16 5 H 0.04 2.50 7.47 -2.91 -0.02 2.48 16 6 C 0.01 0.79 5.45 84.65 0.46 1.26 16 7 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 8 Si 0.95 43.72 24.38 68.60 1.67 45.40 16 9 H -0.27 -11.74 6.86 99.48 0.68 -11.06 16 10 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16 12 N -0.52 -20.57 5.02 -864.74 -4.34 -24.91 16 13 C 0.06 2.18 5.68 86.77 0.49 2.67 16 14 C -0.14 -3.64 6.65 31.98 0.21 -3.43 16 15 C 0.07 1.83 2.73 31.78 0.09 1.92 16 16 H 0.09 2.13 6.28 -2.39 -0.01 2.12 16 17 O -0.30 -7.79 9.88 -92.51 -0.91 -8.70 16 18 C 0.07 1.61 6.70 22.60 0.15 1.76 16 19 C -0.17 -3.33 9.02 22.56 0.20 -3.13 16 20 C -0.12 -1.89 10.11 22.35 0.23 -1.66 16 21 C 0.05 0.80 11.18 84.70 0.95 1.74 16 22 N -0.47 -10.43 10.36 -195.43 -2.02 -12.45 16 23 C 0.06 1.26 11.14 84.80 0.94 2.21 16 24 C 0.05 1.41 5.92 86.65 0.51 1.92 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.04 1.52 3.29 -2.39 -0.01 1.51 16 27 H 0.06 2.18 6.50 -2.39 -0.02 2.16 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.04 1.53 7.77 -2.38 -0.02 1.51 16 30 H 0.06 2.48 7.90 -2.38 -0.02 2.46 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.10 2.08 7.81 -2.38 -0.02 2.06 16 33 H 0.15 2.56 5.78 -2.91 -0.02 2.54 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.09 2.64 8.06 -2.39 -0.02 2.62 16 38 H 0.07 2.01 6.34 -2.39 -0.02 1.99 16 Total: -1.00 -66.44 300.20 0.80 -65.65 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 12.99 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 5.13 Total: -19.95 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -6.07 Total: -95.38 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.91 Total: -8.70 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.40 kcal Total: -66.44 0.80 -65.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246370812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.147 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds