Wall clock time and date at job start Mon Mar 30 2020 04:31:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 C 1.53001 * 109.46917 * 2 1
4 4 N 1.46501 * 109.47285 * 180.02562 * 3 2 1
5 5 C 1.46496 * 120.00253 * 89.99326 * 4 3 2
6 6 C 1.52999 * 109.46662 * 90.00488 * 5 4 3
7 7 C 1.50706 * 109.47163 * 180.02562 * 6 5 4
8 8 C 1.38225 * 119.61903 * 124.72524 * 7 6 5
9 9 C 1.38628 * 119.15868 * 179.75305 * 8 7 6
10 10 C 1.38681 * 118.42043 * 0.51112 * 9 8 7
11 11 C 1.38179 * 119.15955 * 359.73317 * 10 9 8
12 12 N 1.31858 * 119.61572 * 305.00069 * 7 6 5
13 13 C 1.34780 * 119.99859 * 270.00560 * 4 3 2
14 14 O 1.21680 * 120.00228 * 179.97438 * 13 4 3
15 15 C 1.46376 * 119.99925 * 359.97438 * 13 4 3
16 16 H 1.07999 * 120.00137 * 0.02562 * 15 13 4
17 17 C 1.40046 * 120.00118 * 180.02562 * 15 13 4
18 18 N 1.30672 * 119.99956 * 0.02562 * 17 15 13
19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 13
20 20 H 1.48506 * 109.46829 * 60.00327 * 19 17 15
21 21 H 1.48502 * 109.47362 * 180.02562 * 19 17 15
22 22 H 1.48493 * 109.47421 * 300.00505 * 19 17 15
23 23 H 1.08994 * 109.46620 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.46864 * 299.99950 * 1 2 3
25 25 H 1.08997 * 109.46278 * 60.00149 * 1 2 3
26 26 H 1.08994 * 109.47588 * 239.99979 * 2 1 3
27 27 H 1.09005 * 109.46788 * 119.99530 * 2 1 3
28 28 H 1.08999 * 109.47450 * 59.99793 * 3 2 1
29 29 H 1.09000 * 109.47018 * 299.99869 * 3 2 1
30 30 H 1.09001 * 109.47282 * 330.00800 * 5 4 3
31 31 H 1.08995 * 109.47185 * 210.00181 * 5 4 3
32 32 H 1.08997 * 109.47394 * 59.99835 * 6 5 4
33 33 H 1.09004 * 109.47644 * 299.99906 * 6 5 4
34 34 H 1.07994 * 120.42134 * 359.97438 * 8 7 6
35 35 H 1.08000 * 120.79027 * 180.26248 * 9 8 7
36 36 H 1.07997 * 120.41814 * 179.70894 * 10 9 8
37 37 H 1.08004 * 119.61107 * 180.02562 * 11 10 9
38 38 H 0.97000 * 119.99921 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5051 1.4426 -0.0006
5 6 4.2371 1.4427 -1.2696
6 6 4.4919 2.8853 -1.7111
7 6 5.2443 2.8855 -3.0169
8 6 4.7298 3.5703 -4.1018
9 6 5.4325 3.5684 -5.2968
10 6 6.6265 2.8658 -5.3593
11 6 7.0757 2.2002 -4.2348
12 7 6.3832 2.2279 -3.1128
13 6 4.1794 1.4424 1.1663
14 8 5.3962 1.4420 1.1659
15 6 3.4480 1.4426 2.4343
16 1 2.3680 1.4425 2.4347
17 6 4.1487 1.4429 3.6468
18 7 5.4554 1.4435 3.6464
19 14 3.2154 1.4424 5.2650
20 1 2.3622 0.2294 5.3439
21 1 4.1808 1.4435 6.3933
22 1 2.3610 2.6544 5.3440
23 1 -0.3632 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3632 0.5138 -0.8900
26 1 1.8935 -0.5138 -0.8899
27 1 1.8934 -0.5138 0.8901
28 1 1.6767 1.9564 0.8899
29 1 1.6767 1.9563 -0.8900
30 1 3.6477 0.9290 -2.0291
31 1 5.1895 0.9289 -1.1396
32 1 5.0812 3.3990 -0.9517
33 1 3.5394 3.3992 -1.8411
34 1 3.7941 4.1030 -4.0185
35 1 5.0569 4.0982 -6.1597
36 1 7.1977 2.8388 -6.2754
37 1 8.0048 1.6511 -4.2752
38 1 5.9407 1.4440 4.4862
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000274688245.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:15
Heat of formation + Delta-G solvation = -13.755011 kcal
Electronic energy + Delta-G solvation = -19389.849442 eV
Core-core repulsion = 16424.890919 eV
Total energy + Delta-G solvation = -2964.958523 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.05199 -37.88893 -34.76224 -33.69019 -32.46618 -32.21254 -31.41013 -28.79931
-26.19660 -25.27827 -23.61063 -23.16582 -21.25356 -21.02666 -18.83160 -16.75837
-16.48981 -16.01753 -15.64667 -15.41693 -14.71551 -14.38397 -13.95066 -13.80168
-13.47357 -13.17720 -12.83298 -12.67243 -12.51041 -12.09815 -11.59050 -11.41378
-11.36973 -11.32103 -10.99438 -10.95339 -10.65472 -10.43396 -10.17875 -10.12813
-9.88869 -9.76252 -9.18488 -8.84595 -8.78044 -7.49520 -7.15023 -6.12490
-4.57578 1.22169 1.38487 3.18267 3.23475 3.24865 3.93173 4.12730
4.44573 4.60873 4.62506 4.85803 4.98596 5.13082 5.22424 5.52294
5.54876 5.65180 5.68606 5.76471 5.80557 5.88736 5.97702 6.04090
6.10850 6.20534 6.25127 6.29711 6.41872 6.43785 6.67082 6.73863
6.80317 6.87513 6.99080 7.50666 7.74159 8.21447 8.22506 8.43008
9.08534 9.51421 10.65408 10.84936
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.005105 C = 0.004358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.617828 B = 5483.449754 C = 6423.276787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.143 4.143
3 C 0.130 3.870
4 N -0.644 5.644
5 C 0.140 3.860
6 C -0.087 4.087
7 C 0.148 3.852
8 C -0.177 4.177
9 C -0.077 4.077
10 C -0.191 4.191
11 C 0.103 3.897
12 N -0.473 5.473
13 C 0.557 3.443
14 O -0.571 6.571
15 C -0.542 4.542
16 H 0.071 0.929
17 C 0.088 3.912
18 N -0.767 5.767
19 Si 0.903 3.097
20 H -0.268 1.268
21 H -0.281 1.281
22 H -0.268 1.268
23 H 0.047 0.953
24 H 0.054 0.946
25 H 0.047 0.953
26 H 0.050 0.950
27 H 0.072 0.928
28 H 0.079 0.921
29 H 0.046 0.954
30 H 0.046 0.954
31 H 0.084 0.916
32 H 0.090 0.910
33 H 0.071 0.929
34 H 0.132 0.868
35 H 0.129 0.871
36 H 0.130 0.870
37 H 0.153 0.847
38 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.233 2.477 -14.118 15.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.182 4.182
3 C 0.005 3.995
4 N -0.381 5.381
5 C 0.015 3.985
6 C -0.126 4.126
7 C 0.010 3.990
8 C -0.197 4.197
9 C -0.103 4.103
10 C -0.211 4.211
11 C -0.055 4.055
12 N -0.182 5.182
13 C 0.362 3.638
14 O -0.453 6.453
15 C -0.579 4.579
16 H 0.089 0.911
17 C -0.132 4.132
18 N -0.396 5.396
19 Si 0.728 3.272
20 H -0.193 1.193
21 H -0.206 1.206
22 H -0.193 1.193
23 H 0.066 0.934
24 H 0.073 0.927
25 H 0.066 0.934
26 H 0.069 0.931
27 H 0.091 0.909
28 H 0.097 0.903
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.102 0.898
32 H 0.108 0.892
33 H 0.089 0.911
34 H 0.150 0.850
35 H 0.147 0.853
36 H 0.148 0.852
37 H 0.170 0.830
38 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.049 2.028 -13.256 14.008
hybrid contribution -0.858 0.493 -0.125 0.997
sum -4.907 2.521 -13.381 14.473
Atomic orbital electron populations
1.21697 0.96547 1.00898 1.01250 1.21977 0.94603 0.99234 1.02350
1.21208 0.82135 0.95114 1.01023 1.48134 1.04652 1.79927 1.05388
1.20830 0.98185 0.93308 0.86191 1.21071 0.98326 1.01089 0.92150
1.21491 0.90888 0.90968 0.95615 1.22020 1.01718 1.02108 0.93841
1.21523 0.94351 0.96781 0.97646 1.22076 0.98011 1.00722 1.00296
1.22819 0.98685 0.95867 0.88113 1.67623 1.06523 1.17480 1.26560
1.18244 0.86980 0.76305 0.82258 1.90620 1.13962 1.54546 1.86208
1.20965 0.93590 1.54095 0.89257 0.91072 1.25721 0.94554 0.92736
1.00175 1.70018 1.06994 1.35364 1.27239 0.86513 0.79894 0.79407
0.81411 1.19299 1.20638 1.19329 0.93387 0.92707 0.93431 0.93079
0.90921 0.90289 0.93516 0.93516 0.89814 0.89195 0.91086 0.85007
0.85259 0.85250 0.82985 0.92154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16
2 C -0.14 -2.41 6.26 -26.72 -0.17 -2.58 16
3 C 0.13 2.41 5.12 -4.04 -0.02 2.39 16
4 N -0.64 -14.67 2.47 -175.36 -0.43 -15.10 16
5 C 0.14 2.86 5.26 -4.04 -0.02 2.84 16
6 C -0.09 -1.58 5.94 -27.88 -0.17 -1.75 16
7 C 0.15 2.44 6.18 -82.58 -0.51 1.93 16
8 C -0.18 -2.29 9.71 -39.44 -0.38 -2.67 16
9 C -0.08 -0.84 10.18 -39.27 -0.40 -1.24 16
10 C -0.19 -2.11 10.11 -39.44 -0.40 -2.51 16
11 C 0.10 1.40 11.18 -17.55 -0.20 1.20 16
12 N -0.47 -8.29 9.88 -9.47 -0.09 -8.39 16
13 C 0.56 15.84 7.61 -12.99 -0.10 15.74 16
14 O -0.57 -18.68 14.60 5.21 0.08 -18.60 16
15 C -0.54 -15.13 8.74 -35.63 -0.31 -15.45 16
16 H 0.07 1.81 6.00 -52.49 -0.31 1.49 16
17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16
18 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16
19 Si 0.90 20.18 29.56 -169.99 -5.02 15.15 16
20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16
21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
28 H 0.08 1.53 6.09 -51.93 -0.32 1.22 16
29 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16
30 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16
31 H 0.08 2.00 7.22 -51.93 -0.38 1.63 16
32 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16
33 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16
34 H 0.13 1.40 7.95 -52.49 -0.42 0.99 16
35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16
37 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16
38 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16
LS Contribution 323.95 15.07 4.88 4.88
Total: -1.00 -34.78 323.95 -7.95 -42.73
By element:
Atomic # 1 Polarization: 8.78 SS G_CDS: -5.61 Total: 3.17 kcal
Atomic # 6 Polarization: 1.07 SS G_CDS: -2.40 Total: -1.33 kcal
Atomic # 7 Polarization: -46.13 SS G_CDS: 0.13 Total: -46.00 kcal
Atomic # 8 Polarization: -18.68 SS G_CDS: 0.08 Total: -18.60 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -34.78 -7.95 -42.73 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274688245.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal
(2) G-P(sol) polarization free energy of solvation -34.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds