Wall clock time and date at job start Mon Mar 30 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 N 1.46501 * 109.47285 * 180.02562 * 3 2 1 5 5 C 1.46496 * 120.00253 * 89.99326 * 4 3 2 6 6 C 1.52999 * 109.46662 * 90.00488 * 5 4 3 7 7 C 1.50706 * 109.47163 * 180.02562 * 6 5 4 8 8 C 1.38225 * 119.61903 * 124.72524 * 7 6 5 9 9 C 1.38628 * 119.15868 * 179.75305 * 8 7 6 10 10 C 1.38681 * 118.42043 * 0.51112 * 9 8 7 11 11 C 1.38179 * 119.15955 * 359.73317 * 10 9 8 12 12 N 1.31858 * 119.61572 * 305.00069 * 7 6 5 13 13 C 1.34780 * 119.99859 * 270.00560 * 4 3 2 14 14 O 1.21680 * 120.00228 * 179.97438 * 13 4 3 15 15 C 1.46376 * 119.99925 * 359.97438 * 13 4 3 16 16 H 1.07999 * 120.00137 * 0.02562 * 15 13 4 17 17 C 1.40046 * 120.00118 * 180.02562 * 15 13 4 18 18 N 1.30672 * 119.99956 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46829 * 60.00327 * 19 17 15 21 21 H 1.48502 * 109.47362 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47421 * 300.00505 * 19 17 15 23 23 H 1.08994 * 109.46620 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46864 * 299.99950 * 1 2 3 25 25 H 1.08997 * 109.46278 * 60.00149 * 1 2 3 26 26 H 1.08994 * 109.47588 * 239.99979 * 2 1 3 27 27 H 1.09005 * 109.46788 * 119.99530 * 2 1 3 28 28 H 1.08999 * 109.47450 * 59.99793 * 3 2 1 29 29 H 1.09000 * 109.47018 * 299.99869 * 3 2 1 30 30 H 1.09001 * 109.47282 * 330.00800 * 5 4 3 31 31 H 1.08995 * 109.47185 * 210.00181 * 5 4 3 32 32 H 1.08997 * 109.47394 * 59.99835 * 6 5 4 33 33 H 1.09004 * 109.47644 * 299.99906 * 6 5 4 34 34 H 1.07994 * 120.42134 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.79027 * 180.26248 * 9 8 7 36 36 H 1.07997 * 120.41814 * 179.70894 * 10 9 8 37 37 H 1.08004 * 119.61107 * 180.02562 * 11 10 9 38 38 H 0.97000 * 119.99921 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4426 -0.0006 5 6 4.2371 1.4427 -1.2696 6 6 4.4919 2.8853 -1.7111 7 6 5.2443 2.8855 -3.0169 8 6 4.7298 3.5703 -4.1018 9 6 5.4325 3.5684 -5.2968 10 6 6.6265 2.8658 -5.3593 11 6 7.0757 2.2002 -4.2348 12 7 6.3832 2.2279 -3.1128 13 6 4.1794 1.4424 1.1663 14 8 5.3962 1.4420 1.1659 15 6 3.4480 1.4426 2.4343 16 1 2.3680 1.4425 2.4347 17 6 4.1487 1.4429 3.6468 18 7 5.4554 1.4435 3.6464 19 14 3.2154 1.4424 5.2650 20 1 2.3622 0.2294 5.3439 21 1 4.1808 1.4435 6.3933 22 1 2.3610 2.6544 5.3440 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6477 0.9290 -2.0291 31 1 5.1895 0.9289 -1.1396 32 1 5.0812 3.3990 -0.9517 33 1 3.5394 3.3992 -1.8411 34 1 3.7941 4.1030 -4.0185 35 1 5.0569 4.0982 -6.1597 36 1 7.1977 2.8388 -6.2754 37 1 8.0048 1.6511 -4.2752 38 1 5.9407 1.4440 4.4862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274688245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:15 Heat of formation + Delta-G solvation = -13.755011 kcal Electronic energy + Delta-G solvation = -19389.849442 eV Core-core repulsion = 16424.890919 eV Total energy + Delta-G solvation = -2964.958523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05199 -37.88893 -34.76224 -33.69019 -32.46618 -32.21254 -31.41013 -28.79931 -26.19660 -25.27827 -23.61063 -23.16582 -21.25356 -21.02666 -18.83160 -16.75837 -16.48981 -16.01753 -15.64667 -15.41693 -14.71551 -14.38397 -13.95066 -13.80168 -13.47357 -13.17720 -12.83298 -12.67243 -12.51041 -12.09815 -11.59050 -11.41378 -11.36973 -11.32103 -10.99438 -10.95339 -10.65472 -10.43396 -10.17875 -10.12813 -9.88869 -9.76252 -9.18488 -8.84595 -8.78044 -7.49520 -7.15023 -6.12490 -4.57578 1.22169 1.38487 3.18267 3.23475 3.24865 3.93173 4.12730 4.44573 4.60873 4.62506 4.85803 4.98596 5.13082 5.22424 5.52294 5.54876 5.65180 5.68606 5.76471 5.80557 5.88736 5.97702 6.04090 6.10850 6.20534 6.25127 6.29711 6.41872 6.43785 6.67082 6.73863 6.80317 6.87513 6.99080 7.50666 7.74159 8.21447 8.22506 8.43008 9.08534 9.51421 10.65408 10.84936 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.005105 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.617828 B = 5483.449754 C = 6423.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.130 3.870 4 N -0.644 5.644 5 C 0.140 3.860 6 C -0.087 4.087 7 C 0.148 3.852 8 C -0.177 4.177 9 C -0.077 4.077 10 C -0.191 4.191 11 C 0.103 3.897 12 N -0.473 5.473 13 C 0.557 3.443 14 O -0.571 6.571 15 C -0.542 4.542 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.903 3.097 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 2.477 -14.118 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.381 5.381 5 C 0.015 3.985 6 C -0.126 4.126 7 C 0.010 3.990 8 C -0.197 4.197 9 C -0.103 4.103 10 C -0.211 4.211 11 C -0.055 4.055 12 N -0.182 5.182 13 C 0.362 3.638 14 O -0.453 6.453 15 C -0.579 4.579 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.728 3.272 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.049 2.028 -13.256 14.008 hybrid contribution -0.858 0.493 -0.125 0.997 sum -4.907 2.521 -13.381 14.473 Atomic orbital electron populations 1.21697 0.96547 1.00898 1.01250 1.21977 0.94603 0.99234 1.02350 1.21208 0.82135 0.95114 1.01023 1.48134 1.04652 1.79927 1.05388 1.20830 0.98185 0.93308 0.86191 1.21071 0.98326 1.01089 0.92150 1.21491 0.90888 0.90968 0.95615 1.22020 1.01718 1.02108 0.93841 1.21523 0.94351 0.96781 0.97646 1.22076 0.98011 1.00722 1.00296 1.22819 0.98685 0.95867 0.88113 1.67623 1.06523 1.17480 1.26560 1.18244 0.86980 0.76305 0.82258 1.90620 1.13962 1.54546 1.86208 1.20965 0.93590 1.54095 0.89257 0.91072 1.25721 0.94554 0.92736 1.00175 1.70018 1.06994 1.35364 1.27239 0.86513 0.79894 0.79407 0.81411 1.19299 1.20638 1.19329 0.93387 0.92707 0.93431 0.93079 0.90921 0.90289 0.93516 0.93516 0.89814 0.89195 0.91086 0.85007 0.85259 0.85250 0.82985 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.14 -2.41 6.26 -26.72 -0.17 -2.58 16 3 C 0.13 2.41 5.12 -4.04 -0.02 2.39 16 4 N -0.64 -14.67 2.47 -175.36 -0.43 -15.10 16 5 C 0.14 2.86 5.26 -4.04 -0.02 2.84 16 6 C -0.09 -1.58 5.94 -27.88 -0.17 -1.75 16 7 C 0.15 2.44 6.18 -82.58 -0.51 1.93 16 8 C -0.18 -2.29 9.71 -39.44 -0.38 -2.67 16 9 C -0.08 -0.84 10.18 -39.27 -0.40 -1.24 16 10 C -0.19 -2.11 10.11 -39.44 -0.40 -2.51 16 11 C 0.10 1.40 11.18 -17.55 -0.20 1.20 16 12 N -0.47 -8.29 9.88 -9.47 -0.09 -8.39 16 13 C 0.56 15.84 7.61 -12.99 -0.10 15.74 16 14 O -0.57 -18.68 14.60 5.21 0.08 -18.60 16 15 C -0.54 -15.13 8.74 -35.63 -0.31 -15.45 16 16 H 0.07 1.81 6.00 -52.49 -0.31 1.49 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16 19 Si 0.90 20.18 29.56 -169.99 -5.02 15.15 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.53 6.09 -51.93 -0.32 1.22 16 29 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.08 2.00 7.22 -51.93 -0.38 1.63 16 32 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 34 H 0.13 1.40 7.95 -52.49 -0.42 0.99 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -34.78 323.95 -7.95 -42.73 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.61 Total: 3.17 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.40 Total: -1.33 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.13 Total: -46.00 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.08 Total: -18.60 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.78 -7.95 -42.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274688245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds