Wall clock time and date at job start Mon Mar 30 2020 04:31:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 C 1.53001 * 109.46917 * 2 1
4 4 N 1.46501 * 109.47285 * 180.02562 * 3 2 1
5 5 C 1.46496 * 120.00253 * 89.99326 * 4 3 2
6 6 C 1.52999 * 109.46662 * 90.00488 * 5 4 3
7 7 C 1.50706 * 109.47163 * 180.02562 * 6 5 4
8 8 C 1.38225 * 119.61903 * 124.72524 * 7 6 5
9 9 C 1.38628 * 119.15868 * 179.75305 * 8 7 6
10 10 C 1.38681 * 118.42043 * 0.51112 * 9 8 7
11 11 C 1.38179 * 119.15955 * 359.73317 * 10 9 8
12 12 N 1.31858 * 119.61572 * 305.00069 * 7 6 5
13 13 C 1.34780 * 119.99859 * 270.00560 * 4 3 2
14 14 O 1.21680 * 120.00228 * 179.97438 * 13 4 3
15 15 C 1.46376 * 119.99925 * 359.97438 * 13 4 3
16 16 H 1.07999 * 120.00137 * 0.02562 * 15 13 4
17 17 C 1.40046 * 120.00118 * 180.02562 * 15 13 4
18 18 N 1.30672 * 119.99956 * 0.02562 * 17 15 13
19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 13
20 20 H 1.48506 * 109.46829 * 60.00327 * 19 17 15
21 21 H 1.48502 * 109.47362 * 180.02562 * 19 17 15
22 22 H 1.48493 * 109.47421 * 300.00505 * 19 17 15
23 23 H 1.08994 * 109.46620 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.46864 * 299.99950 * 1 2 3
25 25 H 1.08997 * 109.46278 * 60.00149 * 1 2 3
26 26 H 1.08994 * 109.47588 * 239.99979 * 2 1 3
27 27 H 1.09005 * 109.46788 * 119.99530 * 2 1 3
28 28 H 1.08999 * 109.47450 * 59.99793 * 3 2 1
29 29 H 1.09000 * 109.47018 * 299.99869 * 3 2 1
30 30 H 1.09001 * 109.47282 * 330.00800 * 5 4 3
31 31 H 1.08995 * 109.47185 * 210.00181 * 5 4 3
32 32 H 1.08997 * 109.47394 * 59.99835 * 6 5 4
33 33 H 1.09004 * 109.47644 * 299.99906 * 6 5 4
34 34 H 1.07994 * 120.42134 * 359.97438 * 8 7 6
35 35 H 1.08000 * 120.79027 * 180.26248 * 9 8 7
36 36 H 1.07997 * 120.41814 * 179.70894 * 10 9 8
37 37 H 1.08004 * 119.61107 * 180.02562 * 11 10 9
38 38 H 0.97000 * 119.99921 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5051 1.4426 -0.0006
5 6 4.2371 1.4427 -1.2696
6 6 4.4919 2.8853 -1.7111
7 6 5.2443 2.8855 -3.0169
8 6 4.7298 3.5703 -4.1018
9 6 5.4325 3.5684 -5.2968
10 6 6.6265 2.8658 -5.3593
11 6 7.0757 2.2002 -4.2348
12 7 6.3832 2.2279 -3.1128
13 6 4.1794 1.4424 1.1663
14 8 5.3962 1.4420 1.1659
15 6 3.4480 1.4426 2.4343
16 1 2.3680 1.4425 2.4347
17 6 4.1487 1.4429 3.6468
18 7 5.4554 1.4435 3.6464
19 14 3.2154 1.4424 5.2650
20 1 2.3622 0.2294 5.3439
21 1 4.1808 1.4435 6.3933
22 1 2.3610 2.6544 5.3440
23 1 -0.3632 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3632 0.5138 -0.8900
26 1 1.8935 -0.5138 -0.8899
27 1 1.8934 -0.5138 0.8901
28 1 1.6767 1.9564 0.8899
29 1 1.6767 1.9563 -0.8900
30 1 3.6477 0.9290 -2.0291
31 1 5.1895 0.9289 -1.1396
32 1 5.0812 3.3990 -0.9517
33 1 3.5394 3.3992 -1.8411
34 1 3.7941 4.1030 -4.0185
35 1 5.0569 4.0982 -6.1597
36 1 7.1977 2.8388 -6.2754
37 1 8.0048 1.6511 -4.2752
38 1 5.9407 1.4440 4.4862
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000274688245.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:14
Heat of formation + Delta-G solvation = -36.764591 kcal
Electronic energy + Delta-G solvation = -19390.847212 eV
Core-core repulsion = 16424.890919 eV
Total energy + Delta-G solvation = -2965.956293 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.13500 -39.79528 -36.67323 -35.07909 -34.47380 -33.29063 -32.85468 -30.24251
-28.18652 -26.69854 -25.04540 -24.30235 -22.52828 -22.50279 -20.73487 -18.41370
-17.84318 -17.63226 -17.09865 -16.66521 -16.20280 -16.07159 -15.39860 -15.27597
-14.92873 -14.45455 -14.29520 -14.06033 -13.84328 -13.60881 -13.17616 -13.09425
-12.89151 -12.68922 -12.66557 -12.46102 -12.24058 -12.03161 -11.98259 -11.79127
-11.43688 -10.88888 -10.78498 -10.27499 -9.91817 -9.72241 -9.03409 -8.24346
-6.79143 0.20001 0.43295 1.39363 1.43351 1.54339 2.25147 2.50253
2.80515 2.93039 3.45405 3.65441 3.87869 4.03315 4.12492 4.20368
4.23335 4.28534 4.34402 4.52160 4.55295 4.59079 4.69421 4.77672
4.85853 4.89517 5.03817 5.09377 5.21514 5.26256 5.28871 5.30121
5.37157 5.41511 5.56584 5.84994 5.86742 6.20028 6.46630 6.91689
7.17712 7.48987 8.53836 8.73060
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.005105 C = 0.004358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.617828 B = 5483.449754 C = 6423.276787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.137 4.137
3 C 0.125 3.875
4 N -0.645 5.645
5 C 0.146 3.854
6 C -0.072 4.072
7 C 0.114 3.886
8 C -0.170 4.170
9 C -0.071 4.071
10 C -0.173 4.173
11 C 0.079 3.921
12 N -0.528 5.528
13 C 0.539 3.461
14 O -0.631 6.631
15 C -0.563 4.563
16 H 0.093 0.907
17 C 0.027 3.973
18 N -0.825 5.825
19 Si 0.992 3.008
20 H -0.254 1.254
21 H -0.277 1.277
22 H -0.252 1.252
23 H 0.060 0.940
24 H 0.056 0.944
25 H 0.070 0.930
26 H 0.053 0.947
27 H 0.037 0.963
28 H 0.070 0.930
29 H 0.085 0.915
30 H 0.076 0.924
31 H 0.036 0.964
32 H 0.039 0.961
33 H 0.100 0.900
34 H 0.158 0.842
35 H 0.173 0.827
36 H 0.169 0.831
37 H 0.166 0.834
38 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.185 3.339 -16.210 18.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.176 4.176
3 C 0.002 3.998
4 N -0.380 5.380
5 C 0.021 3.979
6 C -0.112 4.112
7 C -0.024 4.024
8 C -0.190 4.190
9 C -0.097 4.097
10 C -0.193 4.193
11 C -0.078 4.078
12 N -0.238 5.238
13 C 0.345 3.655
14 O -0.518 6.518
15 C -0.599 4.599
16 H 0.111 0.889
17 C -0.187 4.187
18 N -0.455 5.455
19 Si 0.811 3.189
20 H -0.178 1.178
21 H -0.202 1.202
22 H -0.175 1.175
23 H 0.079 0.921
24 H 0.075 0.925
25 H 0.089 0.911
26 H 0.072 0.928
27 H 0.056 0.944
28 H 0.088 0.912
29 H 0.103 0.897
30 H 0.094 0.906
31 H 0.054 0.946
32 H 0.058 0.942
33 H 0.118 0.882
34 H 0.176 0.824
35 H 0.191 0.809
36 H 0.187 0.813
37 H 0.183 0.817
38 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -7.061 2.890 -15.400 17.186
hybrid contribution 0.111 0.215 0.340 0.418
sum -6.950 3.105 -15.060 16.874
Atomic orbital electron populations
1.21633 0.93151 1.02204 1.02514 1.21885 0.97457 0.97465 1.00787
1.21476 0.79209 0.96685 1.02404 1.47995 1.06638 1.78619 1.04716
1.20803 0.96177 0.95104 0.85766 1.20807 0.99221 0.98746 0.92393
1.21258 0.91532 0.93761 0.95812 1.22250 1.02600 1.00833 0.93281
1.22047 0.93650 0.95957 0.98039 1.22505 0.97983 0.98342 1.00444
1.23201 0.99239 0.97077 0.88256 1.67465 1.07896 1.19265 1.29173
1.18673 0.86555 0.75925 0.84320 1.90568 1.16489 1.57127 1.87571
1.21460 0.94728 1.54072 0.89667 0.88924 1.27001 0.95416 0.91358
1.04962 1.70223 1.09602 1.36941 1.28710 0.85159 0.78291 0.80412
0.75007 1.17766 1.20220 1.17534 0.92125 0.92517 0.91071 0.92833
0.94400 0.91202 0.89682 0.90563 0.94567 0.94190 0.88189 0.82430
0.80933 0.81337 0.81692 0.91867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.27 9.91 71.99 0.71 -2.56 16
2 C -0.14 -4.50 6.26 30.60 0.19 -4.31 16
3 C 0.13 4.53 5.12 86.38 0.44 4.98 16
4 N -0.64 -30.47 2.47 -826.92 -2.04 -32.52 16
5 C 0.15 6.27 5.26 86.38 0.45 6.73 16
6 C -0.07 -2.75 5.94 29.85 0.18 -2.57 16
7 C 0.11 3.79 6.18 42.55 0.26 4.05 16
8 C -0.17 -3.98 9.71 22.36 0.22 -3.76 16
9 C -0.07 -1.27 10.18 22.47 0.23 -1.04 16
10 C -0.17 -3.29 10.11 22.36 0.23 -3.06 16
11 C 0.08 2.14 11.18 84.67 0.95 3.09 16
12 N -0.53 -19.39 9.88 -183.88 -1.82 -21.20 16
13 C 0.54 32.55 7.61 86.36 0.66 33.21 16
14 O -0.63 -44.59 14.60 -4.28 -0.06 -44.66 16
15 C -0.56 -32.45 8.74 24.83 0.22 -32.23 16
16 H 0.09 4.75 6.00 -2.91 -0.02 4.73 16
17 C 0.03 1.56 5.50 85.30 0.47 2.03 16
18 N -0.82 -52.41 11.83 21.83 0.26 -52.15 16
19 Si 0.99 41.91 29.56 68.60 2.03 43.94 16
20 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16
21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16
22 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16
23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16
28 H 0.07 2.66 6.09 -2.39 -0.01 2.64 16
29 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16
30 H 0.08 2.76 8.07 -2.39 -0.02 2.75 16
31 H 0.04 1.89 7.22 -2.39 -0.02 1.87 16
32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.10 3.07 7.87 -2.39 -0.02 3.05 16
34 H 0.16 2.76 7.95 -2.91 -0.02 2.74 16
35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16
36 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16
37 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16
38 H 0.27 15.73 8.29 -92.71 -0.77 14.97 16
Total: -1.00 -84.62 323.95 4.60 -80.02
By element:
Atomic # 1 Polarization: 21.00 SS G_CDS: 1.04 Total: 22.03 kcal
Atomic # 6 Polarization: -0.67 SS G_CDS: 5.20 Total: 4.53 kcal
Atomic # 7 Polarization: -102.27 SS G_CDS: -3.60 Total: -105.87 kcal
Atomic # 8 Polarization: -44.59 SS G_CDS: -0.06 Total: -44.66 kcal
Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal
Total: -84.62 4.60 -80.02 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274688245.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.256 kcal
(2) G-P(sol) polarization free energy of solvation -84.623 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds