Wall clock time and date at job start Mon Mar 30 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 N 1.46501 * 109.47285 * 180.02562 * 3 2 1 5 5 C 1.46496 * 120.00253 * 89.99326 * 4 3 2 6 6 C 1.52999 * 109.46662 * 90.00488 * 5 4 3 7 7 C 1.50706 * 109.47163 * 180.02562 * 6 5 4 8 8 C 1.38225 * 119.61903 * 124.72524 * 7 6 5 9 9 C 1.38628 * 119.15868 * 179.75305 * 8 7 6 10 10 C 1.38681 * 118.42043 * 0.51112 * 9 8 7 11 11 C 1.38179 * 119.15955 * 359.73317 * 10 9 8 12 12 N 1.31858 * 119.61572 * 305.00069 * 7 6 5 13 13 C 1.34780 * 119.99859 * 270.00560 * 4 3 2 14 14 O 1.21680 * 120.00228 * 179.97438 * 13 4 3 15 15 C 1.46376 * 119.99925 * 359.97438 * 13 4 3 16 16 H 1.07999 * 120.00137 * 0.02562 * 15 13 4 17 17 C 1.40046 * 120.00118 * 180.02562 * 15 13 4 18 18 N 1.30672 * 119.99956 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46829 * 60.00327 * 19 17 15 21 21 H 1.48502 * 109.47362 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47421 * 300.00505 * 19 17 15 23 23 H 1.08994 * 109.46620 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46864 * 299.99950 * 1 2 3 25 25 H 1.08997 * 109.46278 * 60.00149 * 1 2 3 26 26 H 1.08994 * 109.47588 * 239.99979 * 2 1 3 27 27 H 1.09005 * 109.46788 * 119.99530 * 2 1 3 28 28 H 1.08999 * 109.47450 * 59.99793 * 3 2 1 29 29 H 1.09000 * 109.47018 * 299.99869 * 3 2 1 30 30 H 1.09001 * 109.47282 * 330.00800 * 5 4 3 31 31 H 1.08995 * 109.47185 * 210.00181 * 5 4 3 32 32 H 1.08997 * 109.47394 * 59.99835 * 6 5 4 33 33 H 1.09004 * 109.47644 * 299.99906 * 6 5 4 34 34 H 1.07994 * 120.42134 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.79027 * 180.26248 * 9 8 7 36 36 H 1.07997 * 120.41814 * 179.70894 * 10 9 8 37 37 H 1.08004 * 119.61107 * 180.02562 * 11 10 9 38 38 H 0.97000 * 119.99921 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4426 -0.0006 5 6 4.2371 1.4427 -1.2696 6 6 4.4919 2.8853 -1.7111 7 6 5.2443 2.8855 -3.0169 8 6 4.7298 3.5703 -4.1018 9 6 5.4325 3.5684 -5.2968 10 6 6.6265 2.8658 -5.3593 11 6 7.0757 2.2002 -4.2348 12 7 6.3832 2.2279 -3.1128 13 6 4.1794 1.4424 1.1663 14 8 5.3962 1.4420 1.1659 15 6 3.4480 1.4426 2.4343 16 1 2.3680 1.4425 2.4347 17 6 4.1487 1.4429 3.6468 18 7 5.4554 1.4435 3.6464 19 14 3.2154 1.4424 5.2650 20 1 2.3622 0.2294 5.3439 21 1 4.1808 1.4435 6.3933 22 1 2.3610 2.6544 5.3440 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6477 0.9290 -2.0291 31 1 5.1895 0.9289 -1.1396 32 1 5.0812 3.3990 -0.9517 33 1 3.5394 3.3992 -1.8411 34 1 3.7941 4.1030 -4.0185 35 1 5.0569 4.0982 -6.1597 36 1 7.1977 2.8388 -6.2754 37 1 8.0048 1.6511 -4.2752 38 1 5.9407 1.4440 4.4862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274688245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:14 Heat of formation + Delta-G solvation = -36.764591 kcal Electronic energy + Delta-G solvation = -19390.847212 eV Core-core repulsion = 16424.890919 eV Total energy + Delta-G solvation = -2965.956293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.13500 -39.79528 -36.67323 -35.07909 -34.47380 -33.29063 -32.85468 -30.24251 -28.18652 -26.69854 -25.04540 -24.30235 -22.52828 -22.50279 -20.73487 -18.41370 -17.84318 -17.63226 -17.09865 -16.66521 -16.20280 -16.07159 -15.39860 -15.27597 -14.92873 -14.45455 -14.29520 -14.06033 -13.84328 -13.60881 -13.17616 -13.09425 -12.89151 -12.68922 -12.66557 -12.46102 -12.24058 -12.03161 -11.98259 -11.79127 -11.43688 -10.88888 -10.78498 -10.27499 -9.91817 -9.72241 -9.03409 -8.24346 -6.79143 0.20001 0.43295 1.39363 1.43351 1.54339 2.25147 2.50253 2.80515 2.93039 3.45405 3.65441 3.87869 4.03315 4.12492 4.20368 4.23335 4.28534 4.34402 4.52160 4.55295 4.59079 4.69421 4.77672 4.85853 4.89517 5.03817 5.09377 5.21514 5.26256 5.28871 5.30121 5.37157 5.41511 5.56584 5.84994 5.86742 6.20028 6.46630 6.91689 7.17712 7.48987 8.53836 8.73060 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.005105 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.617828 B = 5483.449754 C = 6423.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.125 3.875 4 N -0.645 5.645 5 C 0.146 3.854 6 C -0.072 4.072 7 C 0.114 3.886 8 C -0.170 4.170 9 C -0.071 4.071 10 C -0.173 4.173 11 C 0.079 3.921 12 N -0.528 5.528 13 C 0.539 3.461 14 O -0.631 6.631 15 C -0.563 4.563 16 H 0.093 0.907 17 C 0.027 3.973 18 N -0.825 5.825 19 Si 0.992 3.008 20 H -0.254 1.254 21 H -0.277 1.277 22 H -0.252 1.252 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 3.339 -16.210 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.002 3.998 4 N -0.380 5.380 5 C 0.021 3.979 6 C -0.112 4.112 7 C -0.024 4.024 8 C -0.190 4.190 9 C -0.097 4.097 10 C -0.193 4.193 11 C -0.078 4.078 12 N -0.238 5.238 13 C 0.345 3.655 14 O -0.518 6.518 15 C -0.599 4.599 16 H 0.111 0.889 17 C -0.187 4.187 18 N -0.455 5.455 19 Si 0.811 3.189 20 H -0.178 1.178 21 H -0.202 1.202 22 H -0.175 1.175 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.183 0.817 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.061 2.890 -15.400 17.186 hybrid contribution 0.111 0.215 0.340 0.418 sum -6.950 3.105 -15.060 16.874 Atomic orbital electron populations 1.21633 0.93151 1.02204 1.02514 1.21885 0.97457 0.97465 1.00787 1.21476 0.79209 0.96685 1.02404 1.47995 1.06638 1.78619 1.04716 1.20803 0.96177 0.95104 0.85766 1.20807 0.99221 0.98746 0.92393 1.21258 0.91532 0.93761 0.95812 1.22250 1.02600 1.00833 0.93281 1.22047 0.93650 0.95957 0.98039 1.22505 0.97983 0.98342 1.00444 1.23201 0.99239 0.97077 0.88256 1.67465 1.07896 1.19265 1.29173 1.18673 0.86555 0.75925 0.84320 1.90568 1.16489 1.57127 1.87571 1.21460 0.94728 1.54072 0.89667 0.88924 1.27001 0.95416 0.91358 1.04962 1.70223 1.09602 1.36941 1.28710 0.85159 0.78291 0.80412 0.75007 1.17766 1.20220 1.17534 0.92125 0.92517 0.91071 0.92833 0.94400 0.91202 0.89682 0.90563 0.94567 0.94190 0.88189 0.82430 0.80933 0.81337 0.81692 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.99 0.71 -2.56 16 2 C -0.14 -4.50 6.26 30.60 0.19 -4.31 16 3 C 0.13 4.53 5.12 86.38 0.44 4.98 16 4 N -0.64 -30.47 2.47 -826.92 -2.04 -32.52 16 5 C 0.15 6.27 5.26 86.38 0.45 6.73 16 6 C -0.07 -2.75 5.94 29.85 0.18 -2.57 16 7 C 0.11 3.79 6.18 42.55 0.26 4.05 16 8 C -0.17 -3.98 9.71 22.36 0.22 -3.76 16 9 C -0.07 -1.27 10.18 22.47 0.23 -1.04 16 10 C -0.17 -3.29 10.11 22.36 0.23 -3.06 16 11 C 0.08 2.14 11.18 84.67 0.95 3.09 16 12 N -0.53 -19.39 9.88 -183.88 -1.82 -21.20 16 13 C 0.54 32.55 7.61 86.36 0.66 33.21 16 14 O -0.63 -44.59 14.60 -4.28 -0.06 -44.66 16 15 C -0.56 -32.45 8.74 24.83 0.22 -32.23 16 16 H 0.09 4.75 6.00 -2.91 -0.02 4.73 16 17 C 0.03 1.56 5.50 85.30 0.47 2.03 16 18 N -0.82 -52.41 11.83 21.83 0.26 -52.15 16 19 Si 0.99 41.91 29.56 68.60 2.03 43.94 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 2.66 6.09 -2.39 -0.01 2.64 16 29 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 30 H 0.08 2.76 8.07 -2.39 -0.02 2.75 16 31 H 0.04 1.89 7.22 -2.39 -0.02 1.87 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 3.07 7.87 -2.39 -0.02 3.05 16 34 H 0.16 2.76 7.95 -2.91 -0.02 2.74 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.27 15.73 8.29 -92.71 -0.77 14.97 16 Total: -1.00 -84.62 323.95 4.60 -80.02 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.04 Total: 22.03 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.20 Total: 4.53 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.60 Total: -105.87 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.06 Total: -44.66 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -84.62 4.60 -80.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274688245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.256 kcal (2) G-P(sol) polarization free energy of solvation -84.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds