Wall clock time and date at job start Mon Mar 30 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35527 * 125.68220 * 2 1 4 4 C 1.35451 * 108.87346 * 180.02562 * 3 2 1 5 5 C 1.39837 * 107.86453 * 359.74106 * 4 3 2 6 6 C 1.37655 * 125.67543 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23067 * 359.97438 * 6 2 1 8 8 O 1.21693 * 120.00118 * 4.13663 * 7 6 2 9 9 N 1.34776 * 119.99628 * 184.13729 * 7 6 2 10 10 C 1.46499 * 119.99957 * 174.83776 * 9 7 6 11 11 H 1.09004 * 110.01598 * 326.39224 * 10 9 7 12 12 C 1.53879 * 110.03265 * 87.83116 * 10 9 7 13 13 C 1.54268 * 106.59508 * 119.28643 * 12 10 9 14 14 C 1.54889 * 104.19863 * 23.61247 * 13 12 10 15 15 H 1.08997 * 110.91244 * 80.44084 * 14 13 12 16 16 C 1.50699 * 110.75655 * 203.74203 * 14 13 12 17 17 H 1.08001 * 119.99612 * 113.32828 * 16 14 13 18 18 C 1.37876 * 119.99965 * 293.32798 * 16 14 13 19 19 N 1.31516 * 119.99764 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 120.00014 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.47505 * 89.99949 * 20 18 16 22 22 H 1.48507 * 109.47031 * 209.99971 * 20 18 16 23 23 H 1.48499 * 109.47070 * 329.99888 * 20 18 16 24 24 C 1.54269 * 110.03545 * 205.00276 * 10 9 7 25 25 H 1.09001 * 109.47000 * 264.99141 * 1 2 3 26 26 H 1.09004 * 109.46990 * 24.98090 * 1 2 3 27 27 H 1.08992 * 109.47618 * 144.98503 * 1 2 3 28 28 H 1.08005 * 125.56223 * 0.04171 * 3 2 1 29 29 H 1.08002 * 126.06785 * 180.02562 * 4 3 2 30 30 H 1.08003 * 126.45927 * 180.26317 * 5 4 3 31 31 H 0.96995 * 120.00168 * 354.83685 * 9 7 6 32 32 H 1.08998 * 110.03251 * 238.56808 * 12 10 9 33 33 H 1.08998 * 110.02862 * 359.95566 * 12 10 9 34 34 H 1.08997 * 110.48814 * 264.93137 * 13 12 10 35 35 H 1.09005 * 110.48264 * 142.29432 * 13 12 10 36 36 H 0.97005 * 119.99366 * 179.97438 * 19 18 16 37 37 H 1.08993 * 110.48579 * 98.42728 * 24 10 9 38 38 H 1.08995 * 110.59275 * 335.83550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 -0.0006 5 6 3.5779 -0.6890 0.0051 6 6 2.2678 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0006 8 8 0.6241 -2.7644 -0.0762 9 7 2.7096 -3.5146 0.0831 10 6 2.2508 -4.9012 0.1971 11 1 1.3232 -4.9414 0.7682 12 6 2.0353 -5.5018 -1.2032 13 6 2.9931 -6.7056 -1.3184 14 6 3.2573 -7.1228 0.1497 15 1 2.4359 -7.7257 0.5367 16 6 4.5635 -7.8651 0.2672 17 1 5.3870 -7.4262 0.8110 18 6 4.7073 -9.1045 -0.3195 19 7 5.8471 -9.7525 -0.2166 20 14 3.2832 -9.8631 -1.2607 21 1 3.3585 -9.4548 -2.6864 22 1 3.3592 -11.3432 -1.1650 23 1 1.9998 -9.3947 -0.6788 24 6 3.3320 -5.7609 0.8839 25 1 -0.3633 -0.0897 1.0238 26 1 -0.3633 0.9316 -0.4340 27 1 -0.3634 -0.8416 -0.5896 28 1 1.9083 2.1235 0.0006 29 1 4.4133 1.3610 -0.0003 30 1 4.4583 -1.3146 0.0101 31 1 3.6593 -3.3177 0.0679 32 1 1.0030 -5.8344 -1.3120 33 1 2.2714 -4.7614 -1.9674 34 1 3.9227 -6.4084 -1.8037 35 1 2.5187 -7.5195 -1.8668 36 1 5.9481 -10.6246 -0.6291 37 1 3.1048 -5.8853 1.9426 38 1 4.3170 -5.3122 0.7561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295640756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:10 Heat of formation + Delta-G solvation = 3.435388 kcal Electronic energy + Delta-G solvation = -19444.452768 eV Core-core repulsion = 16480.239677 eV Total energy + Delta-G solvation = -2964.213091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42706 -39.24529 -37.17228 -33.98881 -32.85047 -32.07390 -29.67633 -28.42506 -27.33265 -26.61490 -23.81011 -22.56627 -20.73107 -19.95667 -19.64322 -19.04112 -17.82254 -16.89526 -15.99632 -15.64052 -15.38433 -15.04462 -14.41938 -14.03812 -13.78146 -13.51445 -13.33599 -12.77900 -12.54742 -12.50630 -12.42472 -12.40843 -12.11146 -11.62031 -11.13491 -10.98164 -10.47254 -10.13386 -10.06360 -9.78897 -9.68568 -9.49111 -9.02628 -8.86323 -8.82427 -8.53524 -8.28444 -6.07303 -4.06477 1.44712 2.58394 2.64431 3.30185 3.39286 3.41495 3.45086 3.50808 4.43061 4.64906 4.80338 4.84990 5.08240 5.20125 5.27047 5.30216 5.35291 5.46418 5.47962 5.58328 5.94791 6.04501 6.12468 6.13763 6.30502 6.42829 6.49425 6.57199 6.62766 6.70148 6.84478 6.86867 7.03256 7.08138 7.10445 7.51005 7.70694 7.77183 8.34271 8.51982 8.95950 9.55771 11.05814 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041178 B = 0.004178 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.809799 B = 6700.940973 C = 7114.904464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.413 5.413 3 C 0.007 3.993 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.048 4.048 7 C 0.584 3.416 8 O -0.556 6.556 9 N -0.705 5.705 10 C 0.141 3.859 11 H 0.083 0.917 12 C -0.131 4.131 13 C -0.128 4.128 14 C 0.014 3.986 15 H 0.036 0.964 16 C -0.510 4.510 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.264 1.264 24 C -0.110 4.110 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.167 0.833 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.402 0.598 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 20.219 -0.167 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.086 5.086 3 C -0.128 4.128 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.162 4.162 7 C 0.371 3.629 8 O -0.437 6.437 9 N -0.355 5.355 10 C 0.037 3.963 11 H 0.102 0.898 12 C -0.170 4.170 13 C -0.166 4.166 14 C -0.006 4.006 15 H 0.055 0.945 16 C -0.547 4.547 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.188 1.188 24 C -0.148 4.148 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.184 0.816 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.237 0.763 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.052 19.818 -0.242 21.789 hybrid contribution -0.199 -0.286 -0.640 0.729 sum -9.251 19.532 -0.882 21.630 Atomic orbital electron populations 1.22236 0.76221 1.04705 1.04142 1.43860 1.06786 1.05048 1.52864 1.21995 0.90789 0.91423 1.08572 1.20821 0.95955 0.95069 1.11377 1.21407 0.94593 0.95520 1.05372 1.20216 0.90462 0.87803 1.17699 1.17033 0.85852 0.83490 0.76484 1.90755 1.16370 1.85000 1.51559 1.45993 1.09574 1.06455 1.73434 1.21882 0.98872 0.78450 0.97089 0.89844 1.22563 0.99997 0.98411 0.96005 1.22793 0.97892 0.95262 1.00687 1.20084 0.97942 0.92144 0.90402 0.94545 1.20976 0.97363 1.02063 1.34342 0.90797 1.24985 0.95385 0.96823 0.95834 1.69906 1.24571 1.14470 1.45104 0.86905 0.83822 0.77810 0.80714 1.20364 1.22082 1.18846 1.22586 0.96791 0.96650 0.98813 0.90691 0.90063 0.88018 0.81609 0.84060 0.83719 0.76273 0.92252 0.92407 0.91450 0.93611 0.92696 0.92096 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.49 59.85 0.63 1.27 16 2 N -0.41 -4.81 3.16 -120.24 -0.38 -5.19 16 3 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 4 C -0.21 -2.12 10.81 -39.98 -0.43 -2.55 16 5 C -0.14 -1.67 10.36 -39.12 -0.41 -2.08 16 6 C -0.05 -0.65 6.89 -81.98 -0.56 -1.22 16 7 C 0.58 9.13 7.77 -12.85 -0.10 9.03 16 8 O -0.56 -10.04 14.47 5.19 0.08 -9.96 16 9 N -0.70 -10.48 4.97 -54.02 -0.27 -10.75 16 10 C 0.14 2.40 3.21 -66.81 -0.21 2.18 16 11 H 0.08 1.47 7.64 -51.93 -0.40 1.07 16 12 C -0.13 -2.35 6.59 -25.61 -0.17 -2.52 16 13 C -0.13 -2.68 5.32 -25.07 -0.13 -2.81 16 14 C 0.01 0.30 2.27 -89.78 -0.20 0.10 16 15 H 0.04 0.85 7.02 -51.93 -0.36 0.49 16 16 C -0.51 -13.85 9.07 -34.44 -0.31 -14.17 16 17 H 0.07 2.16 8.01 -52.49 -0.42 1.74 16 18 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 19 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 20 Si 0.88 21.59 24.78 -169.99 -4.21 17.38 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.26 -6.22 6.45 56.52 0.36 -5.85 16 24 C -0.11 -2.05 5.94 -25.07 -0.15 -2.20 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.10 1.16 6.52 -51.93 -0.34 0.82 16 28 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.15 1.44 7.44 -52.48 -0.39 1.05 16 31 H 0.40 5.16 7.26 -40.82 -0.30 4.86 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.00 7.92 -51.93 -0.41 0.58 16 34 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.05 0.98 5.41 -51.93 -0.28 0.70 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.26 7.63 -51.93 -0.40 0.87 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -32.18 307.44 -7.15 -39.32 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.42 Total: 4.25 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.35 Total: -13.17 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.13 Total: -42.45 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.21 Total: 17.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.18 -7.15 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295640756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.759 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds