Wall clock time and date at job start Mon Mar 30 2020 05:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35527 * 125.68220 * 2 1 4 4 C 1.35451 * 108.87346 * 180.02562 * 3 2 1 5 5 C 1.39837 * 107.86453 * 359.74106 * 4 3 2 6 6 C 1.37655 * 125.67543 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23067 * 359.97438 * 6 2 1 8 8 O 1.21693 * 120.00118 * 4.13663 * 7 6 2 9 9 N 1.34776 * 119.99628 * 184.13729 * 7 6 2 10 10 C 1.46499 * 119.99957 * 174.83776 * 9 7 6 11 11 H 1.09004 * 110.01598 * 326.39224 * 10 9 7 12 12 C 1.53879 * 110.03265 * 87.83116 * 10 9 7 13 13 C 1.54268 * 106.59508 * 119.28643 * 12 10 9 14 14 C 1.54889 * 104.19863 * 23.61247 * 13 12 10 15 15 H 1.08997 * 110.91244 * 80.44084 * 14 13 12 16 16 C 1.50699 * 110.75655 * 203.74203 * 14 13 12 17 17 H 1.08001 * 119.99612 * 113.32828 * 16 14 13 18 18 C 1.37876 * 119.99965 * 293.32798 * 16 14 13 19 19 N 1.31516 * 119.99764 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 120.00014 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.47505 * 89.99949 * 20 18 16 22 22 H 1.48507 * 109.47031 * 209.99971 * 20 18 16 23 23 H 1.48499 * 109.47070 * 329.99888 * 20 18 16 24 24 C 1.54269 * 110.03545 * 205.00276 * 10 9 7 25 25 H 1.09001 * 109.47000 * 264.99141 * 1 2 3 26 26 H 1.09004 * 109.46990 * 24.98090 * 1 2 3 27 27 H 1.08992 * 109.47618 * 144.98503 * 1 2 3 28 28 H 1.08005 * 125.56223 * 0.04171 * 3 2 1 29 29 H 1.08002 * 126.06785 * 180.02562 * 4 3 2 30 30 H 1.08003 * 126.45927 * 180.26317 * 5 4 3 31 31 H 0.96995 * 120.00168 * 354.83685 * 9 7 6 32 32 H 1.08998 * 110.03251 * 238.56808 * 12 10 9 33 33 H 1.08998 * 110.02862 * 359.95566 * 12 10 9 34 34 H 1.08997 * 110.48814 * 264.93137 * 13 12 10 35 35 H 1.09005 * 110.48264 * 142.29432 * 13 12 10 36 36 H 0.97005 * 119.99366 * 179.97438 * 19 18 16 37 37 H 1.08993 * 110.48579 * 98.42728 * 24 10 9 38 38 H 1.08995 * 110.59275 * 335.83550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 -0.0006 5 6 3.5779 -0.6890 0.0051 6 6 2.2678 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0006 8 8 0.6241 -2.7644 -0.0762 9 7 2.7096 -3.5146 0.0831 10 6 2.2508 -4.9012 0.1971 11 1 1.3232 -4.9414 0.7682 12 6 2.0353 -5.5018 -1.2032 13 6 2.9931 -6.7056 -1.3184 14 6 3.2573 -7.1228 0.1497 15 1 2.4359 -7.7257 0.5367 16 6 4.5635 -7.8651 0.2672 17 1 5.3870 -7.4262 0.8110 18 6 4.7073 -9.1045 -0.3195 19 7 5.8471 -9.7525 -0.2166 20 14 3.2832 -9.8631 -1.2607 21 1 3.3585 -9.4548 -2.6864 22 1 3.3592 -11.3432 -1.1650 23 1 1.9998 -9.3947 -0.6788 24 6 3.3320 -5.7609 0.8839 25 1 -0.3633 -0.0897 1.0238 26 1 -0.3633 0.9316 -0.4340 27 1 -0.3634 -0.8416 -0.5896 28 1 1.9083 2.1235 0.0006 29 1 4.4133 1.3610 -0.0003 30 1 4.4583 -1.3146 0.0101 31 1 3.6593 -3.3177 0.0679 32 1 1.0030 -5.8344 -1.3120 33 1 2.2714 -4.7614 -1.9674 34 1 3.9227 -6.4084 -1.8037 35 1 2.5187 -7.5195 -1.8668 36 1 5.9481 -10.6246 -0.6291 37 1 3.1048 -5.8853 1.9426 38 1 4.3170 -5.3122 0.7561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295640756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:09 Heat of formation + Delta-G solvation = -17.390321 kcal Electronic energy + Delta-G solvation = -19445.355838 eV Core-core repulsion = 16480.239677 eV Total energy + Delta-G solvation = -2965.116161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29233 -40.49613 -38.65537 -35.41362 -34.23673 -33.50437 -30.85750 -30.01946 -28.77508 -27.35928 -25.60863 -23.72943 -21.65065 -21.42855 -20.97379 -20.34976 -18.94652 -18.69490 -17.26734 -16.85712 -16.57856 -16.37081 -15.97762 -15.21186 -15.09937 -14.77057 -14.45376 -14.15485 -14.09857 -14.07677 -13.34084 -13.25216 -13.14913 -12.88674 -12.83964 -12.63239 -12.28744 -11.83784 -11.68177 -11.51655 -11.28459 -11.05561 -10.97746 -10.68033 -10.10914 -9.66934 -9.15220 -8.26649 -6.29277 0.49446 1.34836 1.38201 1.48024 1.71868 1.85274 2.36446 2.39024 2.44732 3.08982 3.69408 3.88710 3.91840 4.00357 4.08120 4.21506 4.38553 4.49848 4.57109 4.60818 4.63629 4.72188 4.74688 4.89554 4.94374 4.98601 5.11998 5.18611 5.21974 5.29965 5.42018 5.59123 5.65729 5.77758 5.85400 6.02057 6.34599 6.35329 6.57025 6.77262 7.18777 7.36354 8.89891 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041178 B = 0.004178 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.809799 B = 6700.940973 C = 7114.904464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.421 5.421 3 C 0.024 3.976 4 C -0.222 4.222 5 C -0.140 4.140 6 C -0.090 4.090 7 C 0.583 3.417 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.153 3.847 11 H 0.081 0.919 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.006 3.994 15 H 0.034 0.966 16 C -0.509 4.509 17 H 0.039 0.961 18 C 0.015 3.985 19 N -0.951 5.951 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.246 1.246 24 C -0.102 4.102 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.206 0.794 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 22.728 -0.673 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.094 5.094 3 C -0.112 4.112 4 C -0.246 4.246 5 C -0.167 4.167 6 C -0.203 4.203 7 C 0.373 3.627 8 O -0.470 6.470 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.099 0.901 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.014 4.014 15 H 0.052 0.948 16 C -0.547 4.547 17 H 0.058 0.942 18 C -0.182 4.182 19 N -0.592 5.592 20 Si 0.762 3.238 21 H -0.193 1.193 22 H -0.223 1.223 23 H -0.170 1.170 24 C -0.140 4.140 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.095 0.905 28 H 0.223 0.777 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.394 22.349 -0.743 24.659 hybrid contribution 0.306 -0.941 -0.421 1.076 sum -10.088 21.407 -1.164 23.694 Atomic orbital electron populations 1.22318 0.75348 1.05578 1.04153 1.44120 1.07567 1.05037 1.52721 1.22719 0.90469 0.92455 1.05521 1.21202 0.97245 0.94597 1.11515 1.21721 0.94301 0.96741 1.03957 1.20047 0.91593 0.87299 1.21313 1.17342 0.85355 0.84451 0.75599 1.90732 1.17552 1.85592 1.53119 1.45820 1.10155 1.05556 1.73518 1.21563 0.97976 0.79376 0.96247 0.90099 1.22480 0.99491 0.97315 0.96777 1.22648 0.98257 0.96399 0.98905 1.20061 0.95200 0.93575 0.92526 0.94808 1.21282 0.98349 1.02225 1.32829 0.94249 1.25796 0.97798 0.97547 0.97099 1.70047 1.26933 1.15148 1.47025 0.85965 0.81303 0.76675 0.79830 1.19290 1.22277 1.16980 1.22444 0.97627 0.94901 0.98997 0.90515 0.86463 0.90461 0.77717 0.81781 0.82714 0.75140 0.91566 0.91531 0.92352 0.93936 0.92681 0.91377 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.49 127.77 1.34 2.47 16 2 N -0.42 -8.88 3.16 -534.31 -1.69 -10.57 16 3 C 0.02 0.38 11.37 83.48 0.95 1.32 16 4 C -0.22 -3.83 10.81 22.01 0.24 -3.60 16 5 C -0.14 -3.02 10.36 22.57 0.23 -2.78 16 6 C -0.09 -2.31 6.89 40.35 0.28 -2.03 16 7 C 0.58 17.75 7.77 86.45 0.67 18.43 16 8 O -0.59 -20.95 14.47 -4.33 -0.06 -21.01 16 9 N -0.70 -20.08 4.97 -443.04 -2.20 -22.28 16 10 C 0.15 5.02 3.21 45.72 0.15 5.16 16 11 H 0.08 2.75 7.64 -2.39 -0.02 2.73 16 12 C -0.12 -4.18 6.59 31.32 0.21 -3.97 16 13 C -0.12 -5.03 5.32 31.67 0.17 -4.86 16 14 C 0.01 0.25 2.27 -10.25 -0.02 0.23 16 15 H 0.03 1.54 7.02 -2.39 -0.02 1.52 16 16 C -0.51 -28.17 9.07 25.60 0.23 -27.94 16 17 H 0.04 2.39 8.01 -2.91 -0.02 2.36 16 18 C 0.01 0.83 5.46 84.65 0.46 1.30 16 19 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 20 Si 0.94 44.41 24.78 68.60 1.70 46.11 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.25 -10.87 6.45 99.48 0.64 -10.23 16 24 C -0.10 -3.71 5.94 31.67 0.19 -3.53 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.12 1.06 8.12 -2.39 -0.02 1.05 16 27 H 0.08 1.72 6.52 -2.39 -0.02 1.70 16 28 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.16 2.81 7.44 -2.91 -0.02 2.79 16 31 H 0.41 10.10 7.26 -92.71 -0.67 9.43 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.17 7.92 -2.39 -0.02 2.15 16 34 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 35 H 0.04 1.74 5.41 -2.38 -0.01 1.73 16 36 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 2.55 7.63 -2.39 -0.02 2.53 16 Total: -1.00 -70.53 307.44 3.46 -67.07 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.32 Total: 19.18 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 5.09 Total: -19.79 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -3.59 Total: -91.55 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.06 Total: -21.01 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.70 Total: 46.11 kcal Total: -70.53 3.46 -67.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295640756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.677 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds