Wall clock time and date at job start Mon Mar 30 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47287 * 2 1 4 4 C 1.53002 * 109.46969 * 119.99434 * 2 1 3 5 5 C 1.50703 * 109.46853 * 184.99875 * 4 2 1 6 6 O 1.21284 * 120.00053 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.39924 * 120.00273 * 175.37710 * 7 5 4 9 9 C 1.38874 * 120.07468 * 214.81539 * 8 7 5 10 10 C 1.38115 * 119.92868 * 179.76217 * 9 8 7 11 11 C 1.38284 * 120.07087 * 0.48801 * 10 9 8 12 12 C 1.38281 * 120.14205 * 359.76267 * 11 10 9 13 13 C 1.38117 * 120.06950 * 0.02562 * 12 11 10 14 14 N 1.46904 * 109.47043 * 239.99645 * 2 1 3 15 15 C 1.46891 * 110.99832 * 85.00248 * 14 2 1 16 16 C 1.50703 * 109.46920 * 179.97438 * 15 14 2 17 17 H 1.07998 * 119.99799 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00464 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46984 * 90.00321 * 20 18 16 22 22 H 1.48508 * 109.47227 * 210.00278 * 20 18 16 23 23 H 1.48501 * 109.47091 * 329.99930 * 20 18 16 24 24 H 1.09000 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46851 * 299.99921 * 1 2 3 26 26 H 1.08997 * 109.47017 * 60.00587 * 1 2 3 27 27 H 1.08995 * 109.47697 * 305.00175 * 4 2 1 28 28 H 1.09001 * 109.47313 * 65.00518 * 4 2 1 29 29 H 0.97002 * 120.00281 * 355.37839 * 7 5 4 30 30 H 1.08001 * 120.03273 * 359.96977 * 9 8 7 31 31 H 1.07996 * 119.96714 * 180.24946 * 10 9 8 32 32 H 1.07992 * 119.93216 * 179.74484 * 11 10 9 33 33 H 1.07998 * 119.96952 * 179.97438 * 12 11 10 34 34 H 1.08007 * 120.03726 * 179.97438 * 13 12 11 35 35 H 1.00904 * 110.99525 * 208.95421 * 14 2 1 36 36 H 1.08995 * 109.47116 * 299.99441 * 15 14 2 37 37 H 1.08997 * 109.47794 * 59.99932 * 15 14 2 38 38 H 0.96996 * 120.00463 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1450 -0.0203 0.4445 7 7 4.2149 -1.1794 2.3349 8 6 5.6140 -1.1649 2.3444 9 6 6.3176 -2.2391 2.8733 10 6 7.6986 -2.2237 2.8767 11 6 8.3807 -1.1359 2.3633 12 6 7.6831 -0.0625 1.8406 13 6 6.3020 -0.0736 1.8303 14 7 2.0197 -0.6926 -1.1994 15 6 2.0825 0.2224 -2.3468 16 6 2.5886 -0.5218 -3.5556 17 1 2.8389 -1.5696 -3.4790 18 6 2.7320 0.1350 -4.7594 19 7 2.4276 1.4111 -4.8527 20 14 3.3599 -0.7873 -6.2576 21 1 2.2118 -1.3712 -6.9965 22 1 4.0940 0.1507 -7.1446 23 1 4.2733 -1.8744 -5.8227 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2058 29 1 3.7293 -1.5959 3.0641 30 1 5.7853 -3.0870 3.2785 31 1 8.2464 -3.0605 3.2842 32 1 9.4606 -1.1245 2.3708 33 1 8.2186 0.7859 1.4408 34 1 5.7576 0.7653 1.4223 35 1 2.9174 -1.1206 -1.0286 36 1 1.0872 0.6161 -2.5525 37 1 2.7589 1.0460 -2.1183 38 1 2.5289 1.8732 -5.6994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301134890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:33 Heat of formation + Delta-G solvation = -14.268032 kcal Electronic energy + Delta-G solvation = -19217.685248 eV Core-core repulsion = 16252.704479 eV Total energy + Delta-G solvation = -2964.980769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55208 -38.58256 -36.07162 -34.66916 -32.84827 -30.93096 -30.76617 -29.58438 -27.45164 -25.88785 -23.13250 -22.59392 -21.64799 -20.56316 -19.66537 -17.86410 -16.93654 -16.38253 -16.13258 -15.59761 -14.76561 -14.61042 -14.53622 -14.28184 -13.82121 -13.50633 -13.29292 -12.84682 -12.37831 -12.16798 -11.83936 -11.71683 -11.54469 -11.38540 -11.30966 -11.14889 -10.80575 -10.52484 -10.35428 -10.24016 -9.76418 -9.59235 -9.02029 -8.94127 -8.35918 -8.17202 -7.14221 -5.90884 -3.91186 1.24594 1.38445 2.67719 3.03294 3.39569 3.44440 3.49531 3.80421 4.52996 4.69826 4.87858 4.91435 5.09371 5.11496 5.14138 5.37156 5.45202 5.51840 5.56201 5.63062 5.70465 5.97589 5.99425 6.07712 6.28783 6.31694 6.36362 6.47378 6.55488 6.58895 6.77477 7.02755 7.34534 7.42859 7.66498 7.91164 8.17479 8.28314 8.55956 8.78178 9.17730 9.72338 11.20600 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.005043 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.182734 B = 5550.685637 C = 6720.685864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.043 0.957 4 C -0.139 4.139 5 C 0.506 3.494 6 O -0.499 6.499 7 N -0.681 5.681 8 C 0.149 3.851 9 C -0.150 4.150 10 C -0.105 4.105 11 C -0.140 4.140 12 C -0.101 4.101 13 C -0.120 4.120 14 N -0.682 5.682 15 C 0.198 3.802 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.408 0.592 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.332 0.668 36 H 0.025 0.975 37 H -0.010 1.010 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -5.621 19.996 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 H 0.061 0.939 4 C -0.180 4.180 5 C 0.294 3.706 6 O -0.371 6.371 7 N -0.327 5.327 8 C 0.055 3.945 9 C -0.170 4.170 10 C -0.123 4.123 11 C -0.159 4.159 12 C -0.120 4.120 13 C -0.140 4.140 14 N -0.315 5.315 15 C 0.071 3.929 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.200 1.200 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.244 0.756 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.970 -5.273 19.017 20.351 hybrid contribution 0.892 -0.137 -0.306 0.953 sum 5.862 -5.410 18.711 20.340 Atomic orbital electron populations 1.21759 0.94865 1.01769 1.00935 1.21238 0.95232 0.96292 0.89060 0.93900 1.21982 0.90041 1.04452 1.01498 1.21221 0.90937 0.77916 0.80489 1.90813 1.69789 1.39080 1.37449 1.43669 1.04581 1.59529 1.24925 1.17811 0.82812 0.94188 0.99668 1.20888 0.94603 0.97077 1.04473 1.20900 0.93498 0.98321 0.99616 1.21118 0.99854 0.94494 1.00448 1.21106 0.93811 0.98647 0.98420 1.21383 0.94424 0.98040 1.00179 1.60905 1.32816 1.34233 1.03504 1.19512 0.96104 0.90457 0.86806 1.21188 1.42743 0.96592 0.94078 0.92291 1.24963 0.95843 0.94873 0.98916 1.69969 1.49372 1.08958 1.25651 0.86521 0.78857 0.79506 0.82635 1.20700 1.21351 1.19954 0.92430 0.93701 0.91981 0.88707 0.87959 0.75624 0.85902 0.85928 0.86186 0.85783 0.84242 0.85007 0.95718 0.99242 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.42 37.16 0.35 -1.79 16 2 C 0.09 1.68 2.21 -67.71 -0.15 1.53 16 3 H 0.04 0.87 7.61 -51.93 -0.40 0.48 16 4 C -0.14 -1.81 5.30 -27.88 -0.15 -1.95 16 5 C 0.51 7.57 7.14 -10.98 -0.08 7.49 16 6 O -0.50 -9.97 12.02 5.55 0.07 -9.90 16 7 N -0.68 -7.85 5.34 -9.86 -0.05 -7.90 16 8 C 0.15 1.94 6.30 -83.69 -0.53 1.41 16 9 C -0.15 -1.62 9.97 -39.39 -0.39 -2.01 16 10 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 11 C -0.14 -1.51 10.04 -39.55 -0.40 -1.91 16 12 C -0.10 -1.27 10.04 -39.61 -0.40 -1.66 16 13 C -0.12 -1.75 8.70 -39.39 -0.34 -2.09 16 14 N -0.68 -15.56 6.17 -107.99 -0.67 -16.22 16 15 C 0.20 5.56 5.24 -4.98 -0.03 5.54 16 16 C -0.51 -15.33 9.32 -34.44 -0.32 -15.65 16 17 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -28.20 13.29 55.43 0.74 -27.46 16 20 Si 0.90 22.83 29.54 -169.99 -5.02 17.80 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.12 7.45 -51.93 -0.39 0.74 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.41 3.07 8.82 -40.82 -0.36 2.71 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.14 2.31 6.23 -52.48 -0.33 1.98 16 35 H 0.33 7.76 6.49 -39.29 -0.25 7.51 16 36 H 0.02 0.73 7.44 -51.93 -0.39 0.34 16 37 H -0.01 -0.32 8.06 -51.93 -0.42 -0.73 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -35.17 319.85 -8.50 -43.67 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.46 Total: 6.21 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.93 Total: -11.01 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.02 Total: -51.59 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.17 -8.50 -43.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301134890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.401 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds