Wall clock time and date at job start Mon Mar 30 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47287 * 2 1 4 4 C 1.53002 * 109.46969 * 119.99434 * 2 1 3 5 5 C 1.50703 * 109.46853 * 184.99875 * 4 2 1 6 6 O 1.21284 * 120.00053 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.39924 * 120.00273 * 175.37710 * 7 5 4 9 9 C 1.38874 * 120.07468 * 214.81539 * 8 7 5 10 10 C 1.38115 * 119.92868 * 179.76217 * 9 8 7 11 11 C 1.38284 * 120.07087 * 0.48801 * 10 9 8 12 12 C 1.38281 * 120.14205 * 359.76267 * 11 10 9 13 13 C 1.38117 * 120.06950 * 0.02562 * 12 11 10 14 14 N 1.46904 * 109.47043 * 239.99645 * 2 1 3 15 15 C 1.46891 * 110.99832 * 85.00248 * 14 2 1 16 16 C 1.50703 * 109.46920 * 179.97438 * 15 14 2 17 17 H 1.07998 * 119.99799 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00464 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46984 * 90.00321 * 20 18 16 22 22 H 1.48508 * 109.47227 * 210.00278 * 20 18 16 23 23 H 1.48501 * 109.47091 * 329.99930 * 20 18 16 24 24 H 1.09000 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46851 * 299.99921 * 1 2 3 26 26 H 1.08997 * 109.47017 * 60.00587 * 1 2 3 27 27 H 1.08995 * 109.47697 * 305.00175 * 4 2 1 28 28 H 1.09001 * 109.47313 * 65.00518 * 4 2 1 29 29 H 0.97002 * 120.00281 * 355.37839 * 7 5 4 30 30 H 1.08001 * 120.03273 * 359.96977 * 9 8 7 31 31 H 1.07996 * 119.96714 * 180.24946 * 10 9 8 32 32 H 1.07992 * 119.93216 * 179.74484 * 11 10 9 33 33 H 1.07998 * 119.96952 * 179.97438 * 12 11 10 34 34 H 1.08007 * 120.03726 * 179.97438 * 13 12 11 35 35 H 1.00904 * 110.99525 * 208.95421 * 14 2 1 36 36 H 1.08995 * 109.47116 * 299.99441 * 15 14 2 37 37 H 1.08997 * 109.47794 * 59.99932 * 15 14 2 38 38 H 0.96996 * 120.00463 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1450 -0.0203 0.4445 7 7 4.2149 -1.1794 2.3349 8 6 5.6140 -1.1649 2.3444 9 6 6.3176 -2.2391 2.8733 10 6 7.6986 -2.2237 2.8767 11 6 8.3807 -1.1359 2.3633 12 6 7.6831 -0.0625 1.8406 13 6 6.3020 -0.0736 1.8303 14 7 2.0197 -0.6926 -1.1994 15 6 2.0825 0.2224 -2.3468 16 6 2.5886 -0.5218 -3.5556 17 1 2.8389 -1.5696 -3.4790 18 6 2.7320 0.1350 -4.7594 19 7 2.4276 1.4111 -4.8527 20 14 3.3599 -0.7873 -6.2576 21 1 2.2118 -1.3712 -6.9965 22 1 4.0940 0.1507 -7.1446 23 1 4.2733 -1.8744 -5.8227 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2058 29 1 3.7293 -1.5959 3.0641 30 1 5.7853 -3.0870 3.2785 31 1 8.2464 -3.0605 3.2842 32 1 9.4606 -1.1245 2.3708 33 1 8.2186 0.7859 1.4408 34 1 5.7576 0.7653 1.4223 35 1 2.9174 -1.1206 -1.0286 36 1 1.0872 0.6161 -2.5525 37 1 2.7589 1.0460 -2.1183 38 1 2.5289 1.8732 -5.6994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301134890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:33 Heat of formation + Delta-G solvation = -39.954971 kcal Electronic energy + Delta-G solvation = -19218.799117 eV Core-core repulsion = 16252.704479 eV Total energy + Delta-G solvation = -2966.094638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64890 -39.62885 -37.64089 -35.78788 -35.00582 -32.46830 -31.82090 -30.77954 -28.59641 -28.02444 -24.36249 -23.77678 -23.30481 -21.80671 -21.01531 -18.92520 -18.46314 -18.04174 -17.23072 -16.86855 -16.59991 -16.21704 -15.71526 -15.60570 -14.93907 -14.84855 -14.41033 -14.26592 -13.84660 -13.78335 -13.57346 -13.07603 -12.85914 -12.79431 -12.66284 -12.63030 -12.39656 -12.18208 -11.98700 -11.72741 -11.38206 -11.26116 -10.79707 -10.66853 -9.85916 -9.15337 -9.07461 -8.23510 -6.34753 0.31772 0.46975 1.36237 1.40002 1.50948 1.57299 2.05334 2.38252 2.89807 3.09003 3.58835 3.65128 3.87975 4.04129 4.08783 4.30753 4.39518 4.48074 4.53425 4.62620 4.67392 4.72925 4.81212 4.93122 5.10478 5.11547 5.19804 5.32988 5.38638 5.40845 5.45785 5.57048 5.61002 5.63257 6.03786 6.11287 6.41014 6.47512 6.73322 6.88341 7.17344 7.35465 8.88784 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.005043 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.182734 B = 5550.685637 C = 6720.685864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.084 3.916 3 H 0.009 0.991 4 C -0.125 4.125 5 C 0.501 3.499 6 O -0.562 6.562 7 N -0.659 5.659 8 C 0.128 3.872 9 C -0.144 4.144 10 C -0.102 4.102 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.153 4.153 14 N -0.674 5.674 15 C 0.217 3.783 16 C -0.535 4.535 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.143 0.857 28 H 0.130 0.870 29 H 0.430 0.570 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.328 0.672 36 H 0.001 0.999 37 H -0.056 1.056 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -8.588 21.655 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 H 0.027 0.973 4 C -0.164 4.164 5 C 0.291 3.709 6 O -0.439 6.439 7 N -0.306 5.306 8 C 0.034 3.966 9 C -0.164 4.164 10 C -0.121 4.121 11 C -0.158 4.158 12 C -0.137 4.137 13 C -0.173 4.173 14 N -0.306 5.306 15 C 0.089 3.911 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.191 1.191 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.270 0.730 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.020 0.980 37 H -0.038 1.038 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.286 -8.273 20.752 22.957 hybrid contribution 0.830 0.818 -0.718 1.369 sum 6.116 -7.455 20.033 22.233 Atomic orbital electron populations 1.21710 0.92708 1.02827 1.01294 1.21422 0.96813 0.94887 0.89574 0.97305 1.21918 0.88525 1.05672 1.00300 1.21629 0.91829 0.77150 0.80291 1.90815 1.71015 1.41991 1.40054 1.43409 1.04315 1.58355 1.24566 1.18022 0.83357 0.94671 1.00586 1.21256 0.95128 0.96883 1.03155 1.21387 0.93517 0.98835 0.98324 1.21472 1.01266 0.93823 0.99279 1.21280 0.93278 0.99940 0.99251 1.21308 0.95487 0.98347 1.02164 1.60842 1.32297 1.33221 1.04230 1.19080 0.93300 0.89868 0.88816 1.21541 1.43647 0.96816 0.95310 0.92259 1.26007 0.95578 0.95814 1.02525 1.70110 1.49915 1.10754 1.26856 0.85302 0.78648 0.78163 0.77977 1.19100 1.20510 1.19124 0.90902 0.89576 0.95440 0.83966 0.85235 0.73022 0.82722 0.82396 0.83561 0.85474 0.87728 0.85471 0.98050 1.03819 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.42 71.98 0.68 -3.24 16 2 C 0.08 3.07 2.21 44.92 0.10 3.17 16 3 H 0.01 0.39 7.61 -2.39 -0.02 0.37 16 4 C -0.12 -2.98 5.30 29.85 0.16 -2.82 16 5 C 0.50 15.02 7.14 87.66 0.63 15.64 16 6 O -0.56 -24.04 12.02 -3.04 -0.04 -24.07 16 7 N -0.66 -14.35 5.34 -303.50 -1.62 -15.97 16 8 C 0.13 3.25 6.30 38.15 0.24 3.49 16 9 C -0.14 -2.71 9.97 22.39 0.22 -2.48 16 10 C -0.10 -1.75 10.04 22.25 0.22 -1.53 16 11 C -0.14 -2.77 10.04 22.29 0.22 -2.54 16 12 C -0.12 -3.07 10.04 22.25 0.22 -2.84 16 13 C -0.15 -4.70 8.70 22.39 0.19 -4.51 16 14 N -0.67 -31.96 6.17 -495.59 -3.06 -35.02 16 15 C 0.22 13.02 5.24 85.56 0.45 13.47 16 16 C -0.53 -33.51 9.32 25.60 0.24 -33.27 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.94 -60.65 13.29 21.45 0.28 -60.36 16 20 Si 0.98 47.40 29.54 68.60 2.03 49.43 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 27 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.43 5.16 8.82 -92.71 -0.82 4.34 16 30 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.10 3.90 6.23 -2.91 -0.02 3.88 16 35 H 0.33 15.95 6.49 -89.69 -0.58 15.37 16 36 H 0.00 0.09 7.44 -2.39 -0.02 0.07 16 37 H -0.06 -3.77 8.06 -2.39 -0.02 -3.79 16 38 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -83.34 319.85 1.30 -82.04 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.34 Total: 21.07 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.04 Total: -17.11 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.39 Total: -111.36 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -83.34 1.30 -82.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301134890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds