Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47550 * 304.05065 * 3 2 1 5 5 C 1.37089 * 120.00319 * 264.47648 * 4 3 2 6 6 H 1.08003 * 120.00200 * 37.25202 * 5 4 3 7 7 C 1.38960 * 120.00368 * 217.25165 * 5 4 3 8 8 N 1.31407 * 119.99383 * 5.55512 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 185.55482 * 7 5 4 10 10 H 1.48494 * 109.47087 * 90.00295 * 9 7 5 11 11 H 1.48503 * 109.46612 * 210.00110 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99939 * 9 7 5 13 13 C 1.34776 * 119.99681 * 84.75245 * 4 3 2 14 14 O 1.21294 * 119.99943 * 184.24884 * 13 4 3 15 15 C 1.50706 * 120.00235 * 4.24774 * 13 4 3 16 16 H 1.09001 * 110.34981 * 331.36652 * 15 13 4 17 17 N 1.48533 * 110.39765 * 209.04982 * 15 13 4 18 18 C 1.48534 * 104.21048 * 201.56208 * 17 15 13 19 19 C 1.54319 * 104.67082 * 39.63967 * 18 17 15 20 20 H 1.09004 * 111.82243 * 98.49203 * 19 18 17 21 21 C 1.54166 * 108.86572 * 222.50817 * 19 18 17 22 22 C 1.54844 * 104.32440 * 136.32381 * 21 19 18 23 23 C 1.54842 * 102.73583 * 321.82060 * 22 21 19 24 24 C 1.54163 * 104.32375 * 38.18086 * 23 22 21 25 25 H 1.09006 * 112.50635 * 99.14105 * 24 23 22 26 26 H 4.40644 * 5.51494 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46523 * 184.05101 * 3 2 1 28 28 H 1.09002 * 109.46882 * 64.05882 * 3 2 1 29 29 H 0.97006 * 119.99563 * 184.72386 * 8 7 5 30 30 H 1.00905 * 110.99763 * 321.11202 * 17 15 13 31 31 H 1.08992 * 110.39787 * 158.44008 * 18 17 15 32 32 H 1.09004 * 110.39462 * 280.73031 * 18 17 15 33 33 H 1.09006 * 110.46276 * 255.04041 * 21 19 18 34 34 H 1.09009 * 110.45931 * 17.61209 * 21 19 18 35 35 H 1.08996 * 110.75514 * 80.13300 * 22 21 19 36 36 H 1.09004 * 110.75491 * 203.31975 * 22 21 19 37 37 H 1.08996 * 110.46012 * 156.89356 * 23 22 21 38 38 H 1.08997 * 110.46140 * 279.47074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7724 1.1443 5 6 3.4707 -0.1338 2.3099 6 1 2.8904 0.7115 2.6492 7 6 4.5580 -0.5739 3.0549 8 7 5.3293 -1.5306 2.5894 9 14 4.9232 0.1945 4.7179 10 1 4.2077 -0.5587 5.7790 11 1 6.3849 0.1450 4.9757 12 1 4.4675 1.6078 4.7210 13 6 3.2593 -2.1111 1.0493 14 8 3.5900 -2.7597 2.0194 15 6 2.9878 -2.8020 -0.2622 16 1 2.2599 -2.2371 -0.8446 17 7 2.5016 -4.1857 -0.0275 18 6 2.7864 -4.8934 -1.3019 19 6 4.1647 -4.3598 -1.7457 20 1 4.9701 -5.0425 -1.4746 21 6 4.1297 -4.0898 -3.2631 22 6 4.8360 -2.7214 -3.4252 23 6 4.3374 -1.9315 -2.1902 24 6 4.2978 -2.9778 -1.0588 25 1 5.1746 -2.9276 -0.4131 26 1 -1.0499 0.0000 0.0004 27 1 3.0087 1.0260 0.0726 28 1 3.0095 -0.4487 -0.9241 29 1 6.0466 -1.8853 3.1378 30 1 2.9922 -4.6156 0.7424 31 1 2.8310 -5.9699 -1.1369 32 1 2.0271 -4.6551 -2.0467 33 1 4.6743 -4.8659 -3.8010 34 1 3.1000 -4.0313 -3.6161 35 1 5.9192 -2.8400 -3.3964 36 1 4.5267 -2.2341 -4.3498 37 1 5.0339 -1.1301 -1.9439 38 1 3.3409 -1.5291 -2.3722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309989580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = 44.190379 kcal Electronic energy + Delta-G solvation = -20817.062385 eV Core-core repulsion = 17854.616563 eV Total energy + Delta-G solvation = -2962.445822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93659 -37.66431 -34.80961 -33.84669 -32.47359 -31.23993 -30.12765 -27.51045 -26.39669 -25.97439 -24.07406 -21.92318 -20.48920 -19.52748 -18.55702 -17.79561 -17.10367 -15.94676 -15.31561 -15.09790 -14.69681 -14.38206 -13.88993 -13.68759 -13.34490 -13.05620 -12.47043 -12.39075 -12.01954 -11.97287 -11.57440 -11.22646 -10.97461 -10.87978 -10.70678 -10.67063 -10.50626 -10.39279 -10.26307 -10.25658 -10.08633 -9.78769 -9.52208 -8.92171 -8.10870 -7.92204 -7.08133 -5.90170 -3.83995 3.30159 3.33739 3.40051 3.42077 3.43219 4.24689 4.36185 4.68714 4.72093 4.90292 5.02754 5.08113 5.29584 5.38079 5.53182 5.54808 5.66654 5.75842 5.76628 5.83642 5.87515 5.96686 6.08269 6.11038 6.18074 6.24615 6.28586 6.32624 6.41539 6.47364 6.51866 6.56125 6.85201 7.20037 7.62458 7.92618 8.19923 8.26652 9.08897 9.21122 9.69784 10.40022 11.03719 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.007682 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.673656 B = 3644.068644 C = 4115.226216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.199 3.801 4 N -0.454 5.454 5 C -0.332 4.332 6 H 0.080 0.920 7 C 0.044 3.956 8 N -0.812 5.812 9 Si 0.915 3.085 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.469 3.531 14 O -0.501 6.501 15 C 0.062 3.938 16 H 0.087 0.913 17 N -0.655 5.655 18 C 0.045 3.955 19 C -0.127 4.127 20 H 0.077 0.923 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.105 4.105 25 H 0.093 0.907 26 H 0.209 0.791 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.259 0.741 30 H 0.349 0.651 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -1.904 -11.813 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.177 4.177 3 C 0.075 3.925 4 N -0.176 5.176 5 C -0.459 4.459 6 H 0.097 0.903 7 C -0.165 4.165 8 N -0.449 5.449 9 Si 0.743 3.257 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.255 3.745 14 O -0.374 6.374 15 C -0.052 4.052 16 H 0.105 0.895 17 N -0.284 5.284 18 C -0.085 4.085 19 C -0.147 4.147 20 H 0.095 0.905 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.126 4.126 25 H 0.111 0.889 26 H 0.226 0.774 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.167 0.833 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.511 -2.235 -11.317 11.806 hybrid contribution 0.980 0.261 0.798 1.290 sum -1.531 -1.974 -10.519 10.812 Atomic orbital electron populations 1.24708 0.95738 1.02445 1.02062 1.24310 0.95512 0.98928 0.98944 1.18676 0.82857 0.98701 0.92269 1.43217 1.59731 1.03968 1.10700 1.19147 1.10745 1.16069 0.99983 0.90268 1.25182 0.94991 0.96793 0.99580 1.70053 1.15676 1.23074 1.36056 0.86131 0.77227 0.79084 0.83294 1.20747 1.21301 1.19894 1.19471 0.83943 0.82334 0.88725 1.90515 1.45087 1.63192 1.38636 1.22771 0.94318 0.91614 0.96488 0.89476 1.63242 1.58173 1.01898 1.05110 1.23162 0.94396 0.97872 0.93064 1.23140 0.98858 0.97239 0.95462 0.90458 1.22423 1.00482 0.97018 0.95305 1.22516 1.00001 0.95715 0.97830 1.22475 1.01099 0.97741 0.94184 1.22989 0.99741 0.93526 0.96349 0.88907 0.77361 0.88936 0.89806 0.93030 0.83270 0.91586 0.90724 0.92253 0.91514 0.91760 0.91953 0.91334 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.98 19.25 29.55 0.57 -3.41 16 2 C -0.18 -3.41 12.97 -37.12 -0.48 -3.89 16 3 C 0.20 4.01 5.52 -6.83 -0.04 3.97 16 4 N -0.45 -11.45 2.56 -117.93 -0.30 -11.75 16 5 C -0.33 -9.19 9.36 -14.93 -0.14 -9.33 16 6 H 0.08 2.14 7.84 -52.48 -0.41 1.72 16 7 C 0.04 1.24 4.82 -17.47 -0.08 1.15 16 8 N -0.81 -23.78 10.21 55.50 0.57 -23.22 16 9 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 C 0.47 12.01 5.92 -10.98 -0.07 11.94 16 14 O -0.50 -14.84 12.76 5.55 0.07 -14.77 16 15 C 0.06 1.26 2.54 -67.27 -0.17 1.09 16 16 H 0.09 1.73 5.20 -51.93 -0.27 1.46 16 17 N -0.65 -12.71 7.40 -104.06 -0.77 -13.48 16 18 C 0.05 0.68 7.00 -2.23 -0.02 0.67 16 19 C -0.13 -1.88 3.93 -88.32 -0.35 -2.22 16 20 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 21 C -0.11 -1.38 6.36 -25.15 -0.16 -1.54 16 22 C -0.12 -1.51 6.90 -24.79 -0.17 -1.68 16 23 C -0.12 -1.76 5.14 -25.15 -0.13 -1.89 16 24 C -0.11 -1.89 3.44 -88.32 -0.30 -2.19 16 25 H 0.09 2.00 7.90 -51.93 -0.41 1.59 16 26 H 0.21 2.72 7.80 -54.09 -0.42 2.30 16 27 H 0.09 1.75 8.00 -51.93 -0.42 1.34 16 28 H 0.08 1.50 3.89 -51.93 -0.20 1.29 16 29 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 30 H 0.35 7.35 7.82 -39.29 -0.31 7.04 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.05 7.19 -51.93 -0.37 0.68 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.77 7.18 -51.92 -0.37 0.40 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.97 5.99 -51.93 -0.31 0.66 16 LS Contribution 302.92 15.07 4.57 4.57 Total: -1.00 -32.14 302.92 -7.60 -39.74 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.17 Total: 9.40 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.54 Total: -7.34 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.51 Total: -48.45 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.07 Total: -14.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.14 -7.60 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309989580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.927 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds