Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47550 * 304.05065 * 3 2 1 5 5 C 1.37089 * 120.00319 * 264.47648 * 4 3 2 6 6 H 1.08003 * 120.00200 * 37.25202 * 5 4 3 7 7 C 1.38960 * 120.00368 * 217.25165 * 5 4 3 8 8 N 1.31407 * 119.99383 * 5.55512 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 185.55482 * 7 5 4 10 10 H 1.48494 * 109.47087 * 90.00295 * 9 7 5 11 11 H 1.48503 * 109.46612 * 210.00110 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99939 * 9 7 5 13 13 C 1.34776 * 119.99681 * 84.75245 * 4 3 2 14 14 O 1.21294 * 119.99943 * 184.24884 * 13 4 3 15 15 C 1.50706 * 120.00235 * 4.24774 * 13 4 3 16 16 H 1.09001 * 110.34981 * 331.36652 * 15 13 4 17 17 N 1.48533 * 110.39765 * 209.04982 * 15 13 4 18 18 C 1.48534 * 104.21048 * 201.56208 * 17 15 13 19 19 C 1.54319 * 104.67082 * 39.63967 * 18 17 15 20 20 H 1.09004 * 111.82243 * 98.49203 * 19 18 17 21 21 C 1.54166 * 108.86572 * 222.50817 * 19 18 17 22 22 C 1.54844 * 104.32440 * 136.32381 * 21 19 18 23 23 C 1.54842 * 102.73583 * 321.82060 * 22 21 19 24 24 C 1.54163 * 104.32375 * 38.18086 * 23 22 21 25 25 H 1.09006 * 112.50635 * 99.14105 * 24 23 22 26 26 H 4.40644 * 5.51494 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46523 * 184.05101 * 3 2 1 28 28 H 1.09002 * 109.46882 * 64.05882 * 3 2 1 29 29 H 0.97006 * 119.99563 * 184.72386 * 8 7 5 30 30 H 1.00905 * 110.99763 * 321.11202 * 17 15 13 31 31 H 1.08992 * 110.39787 * 158.44008 * 18 17 15 32 32 H 1.09004 * 110.39462 * 280.73031 * 18 17 15 33 33 H 1.09006 * 110.46276 * 255.04041 * 21 19 18 34 34 H 1.09009 * 110.45931 * 17.61209 * 21 19 18 35 35 H 1.08996 * 110.75514 * 80.13300 * 22 21 19 36 36 H 1.09004 * 110.75491 * 203.31975 * 22 21 19 37 37 H 1.08996 * 110.46012 * 156.89356 * 23 22 21 38 38 H 1.08997 * 110.46140 * 279.47074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7724 1.1443 5 6 3.4707 -0.1338 2.3099 6 1 2.8904 0.7115 2.6492 7 6 4.5580 -0.5739 3.0549 8 7 5.3293 -1.5306 2.5894 9 14 4.9232 0.1945 4.7179 10 1 4.2077 -0.5587 5.7790 11 1 6.3849 0.1450 4.9757 12 1 4.4675 1.6078 4.7210 13 6 3.2593 -2.1111 1.0493 14 8 3.5900 -2.7597 2.0194 15 6 2.9878 -2.8020 -0.2622 16 1 2.2599 -2.2371 -0.8446 17 7 2.5016 -4.1857 -0.0275 18 6 2.7864 -4.8934 -1.3019 19 6 4.1647 -4.3598 -1.7457 20 1 4.9701 -5.0425 -1.4746 21 6 4.1297 -4.0898 -3.2631 22 6 4.8360 -2.7214 -3.4252 23 6 4.3374 -1.9315 -2.1902 24 6 4.2978 -2.9778 -1.0588 25 1 5.1746 -2.9276 -0.4131 26 1 -1.0499 0.0000 0.0004 27 1 3.0087 1.0260 0.0726 28 1 3.0095 -0.4487 -0.9241 29 1 6.0466 -1.8853 3.1378 30 1 2.9922 -4.6156 0.7424 31 1 2.8310 -5.9699 -1.1369 32 1 2.0271 -4.6551 -2.0467 33 1 4.6743 -4.8659 -3.8010 34 1 3.1000 -4.0313 -3.6161 35 1 5.9192 -2.8400 -3.3964 36 1 4.5267 -2.2341 -4.3498 37 1 5.0339 -1.1301 -1.9439 38 1 3.3409 -1.5291 -2.3722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309989580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = 22.328211 kcal Electronic energy + Delta-G solvation = -20818.010400 eV Core-core repulsion = 17854.616563 eV Total energy + Delta-G solvation = -2963.393837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42632 -39.38630 -36.56753 -35.26268 -34.35550 -32.95365 -31.55053 -28.77415 -28.16343 -27.48175 -25.78295 -23.48408 -21.56434 -21.20526 -19.96800 -19.32275 -18.88753 -17.71107 -16.91065 -16.61747 -16.23220 -15.93385 -15.45635 -15.35649 -14.85504 -14.37262 -14.14222 -14.05556 -13.49229 -13.30534 -13.22027 -13.00911 -12.90942 -12.57696 -12.12765 -12.03597 -11.91778 -11.86782 -11.59313 -11.46017 -11.41911 -11.36956 -10.98716 -10.94377 -9.95480 -9.55677 -9.13652 -8.01145 -5.99458 1.38908 1.43590 1.50834 1.84345 1.98400 2.36830 2.51485 3.11703 3.27002 3.44300 3.53332 3.67889 3.75264 3.95267 4.25826 4.27131 4.36912 4.44821 4.49471 4.54120 4.59555 4.67553 4.71394 4.81484 4.93156 4.99597 5.02871 5.15939 5.17185 5.23589 5.28674 5.42950 5.45792 5.49689 5.77324 6.15985 6.31445 6.77706 7.01746 7.20495 7.68710 8.42742 8.91302 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.007682 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.673656 B = 3644.068644 C = 4115.226216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.231 4.231 3 C 0.200 3.800 4 N -0.469 5.469 5 C -0.352 4.352 6 H 0.080 0.920 7 C -0.008 4.008 8 N -0.843 5.843 9 Si 0.978 3.022 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.255 1.255 13 C 0.458 3.542 14 O -0.555 6.555 15 C 0.074 3.926 16 H 0.097 0.903 17 N -0.669 5.669 18 C 0.047 3.953 19 C -0.122 4.122 20 H 0.074 0.926 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.106 4.106 25 H 0.043 0.957 26 H 0.251 0.749 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.252 0.748 30 H 0.334 0.666 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -1.759 -14.119 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.232 4.232 3 C 0.077 3.923 4 N -0.190 5.190 5 C -0.480 4.480 6 H 0.098 0.902 7 C -0.214 4.214 8 N -0.480 5.480 9 Si 0.803 3.197 10 H -0.217 1.217 11 H -0.208 1.208 12 H -0.178 1.178 13 C 0.246 3.754 14 O -0.432 6.432 15 C -0.040 4.040 16 H 0.115 0.885 17 N -0.298 5.298 18 C -0.082 4.082 19 C -0.142 4.142 20 H 0.093 0.907 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.127 4.127 25 H 0.062 0.938 26 H 0.267 0.733 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.949 -2.047 -13.674 14.380 hybrid contribution 1.305 0.233 1.507 2.007 sum -2.644 -1.815 -12.167 12.583 Atomic orbital electron populations 1.25663 0.96592 0.99664 0.99149 1.24260 0.95836 1.01517 1.01594 1.18730 0.83988 0.98419 0.91173 1.43467 1.59510 1.04529 1.11504 1.19439 1.10765 1.16177 1.01599 0.90220 1.26057 0.94970 0.97196 1.03157 1.70218 1.16131 1.24611 1.37002 0.85163 0.76969 0.78979 0.78567 1.21729 1.20834 1.17837 1.20388 0.82417 0.82492 0.90093 1.90465 1.47364 1.64502 1.40869 1.22627 0.95765 0.91799 0.93807 0.88495 1.63289 1.58124 1.01728 1.06633 1.23326 0.94909 0.98631 0.91341 1.23101 0.98645 0.94948 0.97539 0.90713 1.22408 1.01762 0.97373 0.92733 1.22501 1.00065 0.95507 0.97250 1.22461 1.01496 0.96940 0.94497 1.22882 0.96309 0.97028 0.96491 0.93827 0.73302 0.88528 0.87935 0.93819 0.84932 0.89692 0.88782 0.89983 0.90012 0.91786 0.89281 0.92665 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.09 19.25 74.32 1.43 -4.66 16 2 C -0.23 -8.70 12.97 31.13 0.40 -8.29 16 3 C 0.20 8.10 5.52 84.58 0.47 8.57 16 4 N -0.47 -24.37 2.56 -645.41 -1.65 -26.02 16 5 C -0.35 -20.07 9.36 84.04 0.79 -19.29 16 6 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 7 C -0.01 -0.45 4.82 84.93 0.41 -0.04 16 8 N -0.84 -51.84 10.21 21.67 0.22 -51.62 16 9 Si 0.98 46.21 29.56 68.60 2.03 48.23 16 10 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.25 -11.08 7.11 99.48 0.71 -10.38 16 13 C 0.46 24.40 5.92 87.66 0.52 24.92 16 14 O -0.55 -34.69 12.76 -3.07 -0.04 -34.73 16 15 C 0.07 3.03 2.54 44.30 0.11 3.14 16 16 H 0.10 3.77 5.20 -2.39 -0.01 3.76 16 17 N -0.67 -26.02 7.40 -483.13 -3.57 -29.59 16 18 C 0.05 1.32 7.00 86.43 0.60 1.93 16 19 C -0.12 -3.43 3.93 -9.30 -0.04 -3.47 16 20 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 21 C -0.11 -2.14 6.36 31.62 0.20 -1.94 16 22 C -0.12 -2.49 6.90 31.85 0.22 -2.27 16 23 C -0.12 -3.36 5.14 31.62 0.16 -3.20 16 24 C -0.11 -3.85 3.44 -9.30 -0.03 -3.89 16 25 H 0.04 2.00 7.90 -2.38 -0.02 1.98 16 26 H 0.25 5.35 7.80 -4.42 -0.03 5.31 16 27 H 0.10 3.72 8.00 -2.38 -0.02 3.70 16 28 H 0.10 3.65 3.89 -2.39 -0.01 3.64 16 29 H 0.25 15.13 8.32 -92.70 -0.77 14.36 16 30 H 0.33 14.63 7.82 -89.69 -0.70 13.93 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.31 7.19 -2.38 -0.02 2.29 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.08 1.47 7.18 -2.38 -0.02 1.46 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.06 5.99 -2.39 -0.01 2.05 16 Total: -1.00 -73.92 302.92 2.60 -71.33 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.37 Total: 30.89 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 5.25 Total: -8.49 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.00 Total: -107.24 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.04 Total: -34.73 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.92 2.60 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309989580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.653 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds