Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46914 * 124.77069 * 3 2 1 5 5 C 1.37102 * 119.99697 * 263.17010 * 4 3 2 6 6 H 1.07993 * 120.00017 * 142.44753 * 5 4 3 7 7 C 1.38949 * 119.99988 * 322.44709 * 5 4 3 8 8 N 1.31414 * 119.99747 * 158.17895 * 7 5 4 9 9 Si 1.86799 * 120.00181 * 338.18051 * 7 5 4 10 10 H 1.48491 * 109.47380 * 95.99342 * 9 7 5 11 11 H 1.48501 * 109.46968 * 215.99210 * 9 7 5 12 12 H 1.48496 * 109.47012 * 335.98774 * 9 7 5 13 13 C 1.34768 * 120.00179 * 83.17480 * 4 3 2 14 14 O 1.21294 * 120.00297 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00152 * 0.27410 * 13 4 3 16 16 H 1.09003 * 109.95914 * 319.02392 * 15 13 4 17 17 N 1.47101 * 109.97674 * 197.78123 * 15 13 4 18 18 C 1.46961 * 109.26352 * 222.98938 * 17 15 13 19 19 C 1.53804 * 108.16382 * 1.57531 * 18 17 15 20 20 H 1.09000 * 112.05948 * 253.10785 * 19 18 17 21 21 C 1.54004 * 108.66488 * 128.77432 * 19 18 17 22 22 C 1.54205 * 106.80028 * 248.96212 * 21 19 18 23 23 C 1.54918 * 104.22806 * 23.17939 * 22 21 19 24 24 C 1.53633 * 109.97766 * 80.26708 * 15 13 4 25 25 H 1.08992 * 112.57180 * 268.06240 * 24 15 13 26 26 H 4.40641 * 5.51433 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47168 * 4.76519 * 3 2 1 28 28 H 1.09001 * 109.47197 * 244.76627 * 3 2 1 29 29 H 0.97002 * 119.99812 * 180.02562 * 8 7 5 30 30 H 1.00907 * 111.00044 * 100.25581 * 17 15 13 31 31 H 1.09003 * 109.73503 * 121.25645 * 18 17 15 32 32 H 1.08996 * 109.73738 * 241.88736 * 18 17 15 33 33 H 1.09004 * 109.99265 * 8.29748 * 21 19 18 34 34 H 1.09001 * 109.99656 * 129.62349 * 21 19 18 35 35 H 1.09000 * 110.48199 * 141.86452 * 22 21 19 36 36 H 1.08993 * 110.48038 * 264.36649 * 22 21 19 37 37 H 1.09006 * 110.76594 * 80.09047 * 23 22 21 38 38 H 1.09004 * 110.76453 * 203.30090 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7886 -1.1346 5 6 3.4958 0.1620 -2.2992 6 1 3.2769 0.6230 -3.2509 7 6 4.1443 -1.0660 -2.2548 8 7 4.1144 -1.8629 -3.2994 9 14 5.0585 -1.5844 -0.7105 10 1 4.1777 -2.4427 0.1216 11 1 6.2769 -2.3446 -1.0883 12 1 5.4478 -0.3778 0.0627 13 6 3.2272 2.1293 -1.0336 14 8 3.6316 2.7816 -1.9728 15 6 2.8354 2.8174 0.2485 16 1 1.9307 2.3635 0.6530 17 7 2.6116 4.2502 0.0018 18 6 3.2244 5.0304 1.0861 19 6 3.9071 4.0504 2.0552 20 1 3.3564 3.9492 2.9904 21 6 5.3570 4.5154 2.2862 22 6 6.2720 3.4735 1.6115 23 6 5.3686 2.8087 0.5429 24 6 3.9774 2.7123 1.2708 25 1 3.8823 1.8390 1.9160 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0233 -0.0854 28 1 3.0092 0.4389 0.9296 29 1 4.5668 -2.7204 -3.2683 30 1 1.6265 4.4538 -0.0780 31 1 3.9649 5.7156 0.6733 32 1 2.4554 5.5943 1.6139 33 1 5.5107 5.4951 1.8338 34 1 5.5682 4.5606 3.3546 35 1 7.1240 3.9629 1.1396 36 1 6.6115 2.7362 2.3388 37 1 5.2981 3.4342 -0.3471 38 1 5.7390 1.8159 0.2872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309989583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = 40.693944 kcal Electronic energy + Delta-G solvation = -20853.252670 eV Core-core repulsion = 17890.655232 eV Total energy + Delta-G solvation = -2962.597439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22716 -37.97697 -35.24318 -34.18341 -32.66346 -31.58323 -30.39119 -28.21485 -26.75691 -26.30375 -24.63358 -21.76551 -20.62995 -19.42106 -18.64992 -18.37320 -16.99961 -16.69784 -15.79738 -15.61766 -14.97238 -14.40947 -14.19383 -13.64292 -13.51373 -13.09864 -13.05566 -12.90993 -12.41547 -12.33468 -11.90624 -11.87864 -11.18553 -10.94319 -10.87502 -10.78486 -10.74467 -10.44836 -10.39111 -10.23620 -10.19007 -9.75000 -9.55602 -9.08980 -8.60976 -7.89106 -7.79690 -6.37265 -3.94619 2.99687 3.14912 3.17795 3.21533 3.32459 3.75622 4.13598 4.19112 4.48044 4.61445 4.75052 4.79072 4.97467 5.11116 5.28660 5.38744 5.43904 5.47286 5.57969 5.60700 5.67462 5.75428 5.84523 5.90348 5.98593 6.02714 6.03686 6.15446 6.22210 6.36840 6.42147 6.54884 6.80376 7.10540 7.55349 7.63261 8.06308 8.32464 8.55603 9.01218 9.32927 9.83424 10.75182 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.008594 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.678609 B = 3257.286052 C = 3759.299625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.176 4.176 3 C 0.191 3.809 4 N -0.469 5.469 5 C -0.311 4.311 6 H 0.105 0.895 7 C 0.060 3.940 8 N -0.863 5.863 9 Si 0.862 3.138 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.256 1.256 13 C 0.490 3.510 14 O -0.530 6.530 15 C 0.068 3.932 16 H 0.061 0.939 17 N -0.658 5.658 18 C 0.061 3.939 19 C -0.112 4.112 20 H 0.078 0.922 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.090 4.090 25 H 0.089 0.911 26 H 0.213 0.787 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.273 0.727 30 H 0.339 0.661 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 7.657 14.543 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.177 4.177 3 C 0.068 3.932 4 N -0.193 5.193 5 C -0.438 4.438 6 H 0.123 0.877 7 C -0.146 4.146 8 N -0.500 5.500 9 Si 0.689 3.311 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.180 1.180 13 C 0.277 3.723 14 O -0.408 6.408 15 C -0.046 4.046 16 H 0.079 0.921 17 N -0.287 5.287 18 C -0.068 4.068 19 C -0.131 4.131 20 H 0.097 0.903 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.109 4.109 25 H 0.108 0.892 26 H 0.230 0.770 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.586 7.932 13.457 15.632 hybrid contribution -0.513 -0.842 1.523 1.814 sum -1.099 7.091 14.980 16.610 Atomic orbital electron populations 1.24738 0.95667 1.01893 1.01605 1.23901 0.95012 0.99441 0.99365 1.18981 0.83837 0.98754 0.91651 1.43672 1.58016 1.04521 1.13050 1.19016 1.36772 1.02832 0.85203 0.87722 1.25349 0.96359 0.95788 0.97070 1.69759 1.40434 1.09005 1.30763 0.87183 0.80566 0.79352 0.83998 1.20239 1.21047 1.17981 1.19961 0.81372 0.82221 0.88723 1.90553 1.46860 1.63732 1.39624 1.21935 0.97852 0.89751 0.95034 0.92097 1.60691 1.18987 1.03821 1.45243 1.22625 0.98336 0.95722 0.90141 1.22803 0.97023 0.95155 0.98145 0.90314 1.22224 0.93567 0.99179 0.99980 1.22349 0.97963 0.97791 0.98020 1.23061 0.92390 1.01843 0.98380 1.23149 0.95495 0.97206 0.95095 0.89240 0.76994 0.88642 0.89969 0.91639 0.84426 0.90639 0.93683 0.91405 0.92295 0.91711 0.92101 0.89026 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.70 19.25 29.55 0.57 -3.13 16 2 C -0.18 -3.43 12.54 -37.12 -0.47 -3.90 16 3 C 0.19 3.96 4.14 -6.83 -0.03 3.94 16 4 N -0.47 -11.46 2.16 -117.94 -0.25 -11.71 16 5 C -0.31 -8.89 9.36 -14.93 -0.14 -9.03 16 6 H 0.11 3.39 7.91 -52.49 -0.42 2.97 16 7 C 0.06 1.66 5.27 -17.47 -0.09 1.57 16 8 N -0.86 -25.15 13.96 55.50 0.77 -24.38 16 9 Si 0.86 19.95 24.99 -169.99 -4.25 15.70 16 10 H -0.28 -5.96 6.71 56.52 0.38 -5.58 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -5.63 6.44 56.52 0.36 -5.26 16 13 C 0.49 11.53 5.40 -10.99 -0.06 11.47 16 14 O -0.53 -14.57 15.61 5.55 0.09 -14.48 16 15 C 0.07 1.22 2.62 -68.43 -0.18 1.04 16 16 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 17 N -0.66 -10.94 6.53 -106.96 -0.70 -11.64 16 18 C 0.06 0.80 7.07 -3.37 -0.02 0.78 16 19 C -0.11 -1.41 3.86 -88.48 -0.34 -1.75 16 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.11 -1.29 6.38 -25.58 -0.16 -1.45 16 22 C -0.12 -1.65 6.83 -25.09 -0.17 -1.82 16 23 C -0.12 -2.08 5.20 -23.37 -0.12 -2.20 16 24 C -0.09 -1.42 3.25 -86.74 -0.28 -1.70 16 25 H 0.09 1.29 6.87 -51.93 -0.36 0.94 16 26 H 0.21 2.61 7.80 -54.09 -0.42 2.19 16 27 H 0.10 2.08 3.62 -51.93 -0.19 1.90 16 28 H 0.08 1.45 5.35 -51.93 -0.28 1.17 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.34 4.99 8.90 -39.29 -0.35 4.64 16 31 H 0.08 1.03 7.02 -51.93 -0.36 0.66 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.75 7.04 -51.93 -0.37 0.39 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.87 6.88 -51.93 -0.36 1.51 16 38 H 0.07 1.34 7.48 -51.93 -0.39 0.95 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -32.39 299.07 -6.46 -38.85 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.13 Total: 9.34 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.50 Total: -6.19 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.18 Total: -47.73 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.09 Total: -14.48 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.25 Total: 15.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.39 -6.46 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309989583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.549 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds