Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46914 * 124.77069 * 3 2 1 5 5 C 1.37102 * 119.99697 * 263.17010 * 4 3 2 6 6 H 1.07993 * 120.00017 * 142.44753 * 5 4 3 7 7 C 1.38949 * 119.99988 * 322.44709 * 5 4 3 8 8 N 1.31414 * 119.99747 * 158.17895 * 7 5 4 9 9 Si 1.86799 * 120.00181 * 338.18051 * 7 5 4 10 10 H 1.48491 * 109.47380 * 95.99342 * 9 7 5 11 11 H 1.48501 * 109.46968 * 215.99210 * 9 7 5 12 12 H 1.48496 * 109.47012 * 335.98774 * 9 7 5 13 13 C 1.34768 * 120.00179 * 83.17480 * 4 3 2 14 14 O 1.21294 * 120.00297 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00152 * 0.27410 * 13 4 3 16 16 H 1.09003 * 109.95914 * 319.02392 * 15 13 4 17 17 N 1.47101 * 109.97674 * 197.78123 * 15 13 4 18 18 C 1.46961 * 109.26352 * 222.98938 * 17 15 13 19 19 C 1.53804 * 108.16382 * 1.57531 * 18 17 15 20 20 H 1.09000 * 112.05948 * 253.10785 * 19 18 17 21 21 C 1.54004 * 108.66488 * 128.77432 * 19 18 17 22 22 C 1.54205 * 106.80028 * 248.96212 * 21 19 18 23 23 C 1.54918 * 104.22806 * 23.17939 * 22 21 19 24 24 C 1.53633 * 109.97766 * 80.26708 * 15 13 4 25 25 H 1.08992 * 112.57180 * 268.06240 * 24 15 13 26 26 H 4.40641 * 5.51433 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47168 * 4.76519 * 3 2 1 28 28 H 1.09001 * 109.47197 * 244.76627 * 3 2 1 29 29 H 0.97002 * 119.99812 * 180.02562 * 8 7 5 30 30 H 1.00907 * 111.00044 * 100.25581 * 17 15 13 31 31 H 1.09003 * 109.73503 * 121.25645 * 18 17 15 32 32 H 1.08996 * 109.73738 * 241.88736 * 18 17 15 33 33 H 1.09004 * 109.99265 * 8.29748 * 21 19 18 34 34 H 1.09001 * 109.99656 * 129.62349 * 21 19 18 35 35 H 1.09000 * 110.48199 * 141.86452 * 22 21 19 36 36 H 1.08993 * 110.48038 * 264.36649 * 22 21 19 37 37 H 1.09006 * 110.76594 * 80.09047 * 23 22 21 38 38 H 1.09004 * 110.76453 * 203.30090 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7886 -1.1346 5 6 3.4958 0.1620 -2.2992 6 1 3.2769 0.6230 -3.2509 7 6 4.1443 -1.0660 -2.2548 8 7 4.1144 -1.8629 -3.2994 9 14 5.0585 -1.5844 -0.7105 10 1 4.1777 -2.4427 0.1216 11 1 6.2769 -2.3446 -1.0883 12 1 5.4478 -0.3778 0.0627 13 6 3.2272 2.1293 -1.0336 14 8 3.6316 2.7816 -1.9728 15 6 2.8354 2.8174 0.2485 16 1 1.9307 2.3635 0.6530 17 7 2.6116 4.2502 0.0018 18 6 3.2244 5.0304 1.0861 19 6 3.9071 4.0504 2.0552 20 1 3.3564 3.9492 2.9904 21 6 5.3570 4.5154 2.2862 22 6 6.2720 3.4735 1.6115 23 6 5.3686 2.8087 0.5429 24 6 3.9774 2.7123 1.2708 25 1 3.8823 1.8390 1.9160 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0233 -0.0854 28 1 3.0092 0.4389 0.9296 29 1 4.5668 -2.7204 -3.2683 30 1 1.6265 4.4538 -0.0780 31 1 3.9649 5.7156 0.6733 32 1 2.4554 5.5943 1.6139 33 1 5.5107 5.4951 1.8338 34 1 5.5682 4.5606 3.3546 35 1 7.1240 3.9629 1.1396 36 1 6.6115 2.7362 2.3388 37 1 5.2981 3.4342 -0.3471 38 1 5.7390 1.8159 0.2872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309989583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = 16.545960 kcal Electronic energy + Delta-G solvation = -20854.299806 eV Core-core repulsion = 17890.655232 eV Total energy + Delta-G solvation = -2963.644574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63376 -39.55456 -37.08544 -35.41031 -34.55089 -33.31130 -31.68157 -29.36751 -28.42279 -27.76041 -26.31301 -23.22844 -21.79611 -20.54125 -20.21548 -20.10251 -18.50933 -18.30651 -17.45385 -17.31465 -16.31170 -15.81373 -15.62977 -15.17693 -14.90051 -14.84691 -14.53541 -14.33380 -14.07928 -13.88099 -13.31107 -13.22872 -12.83410 -12.66736 -12.28136 -12.12109 -11.88378 -11.74952 -11.67576 -11.64251 -11.37475 -11.25171 -11.14761 -11.00005 -10.32800 -9.83317 -9.24068 -8.52475 -6.15841 1.15283 1.28424 1.41219 1.66177 1.87699 1.99787 2.16123 2.70531 2.90621 3.34277 3.41068 3.52133 3.58379 3.77720 4.03042 4.11230 4.21087 4.30388 4.34326 4.41017 4.47641 4.54731 4.56505 4.67522 4.74919 4.97989 5.02575 5.06561 5.12123 5.20558 5.28874 5.44004 5.49448 5.51982 5.91970 6.03673 6.46539 6.59249 6.69019 6.95216 7.27582 7.91752 8.65234 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.008594 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.678609 B = 3257.286052 C = 3759.299625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.239 4.239 3 C 0.192 3.808 4 N -0.478 5.478 5 C -0.331 4.331 6 H 0.039 0.961 7 C 0.011 3.989 8 N -0.912 5.912 9 Si 0.934 3.066 10 H -0.241 1.241 11 H -0.285 1.285 12 H -0.241 1.241 13 C 0.483 3.517 14 O -0.588 6.588 15 C 0.080 3.920 16 H 0.078 0.922 17 N -0.685 5.685 18 C 0.059 3.941 19 C -0.100 4.100 20 H 0.113 0.887 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.094 4.094 25 H 0.111 0.889 26 H 0.257 0.743 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.280 0.720 30 H 0.348 0.652 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 8.089 19.479 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.240 4.240 3 C 0.070 3.930 4 N -0.201 5.201 5 C -0.459 4.459 6 H 0.057 0.943 7 C -0.191 4.191 8 N -0.549 5.549 9 Si 0.756 3.244 10 H -0.166 1.166 11 H -0.211 1.211 12 H -0.164 1.164 13 C 0.273 3.727 14 O -0.469 6.469 15 C -0.033 4.033 16 H 0.096 0.904 17 N -0.316 5.316 18 C -0.069 4.069 19 C -0.119 4.119 20 H 0.131 0.869 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.163 4.163 24 C -0.113 4.113 25 H 0.129 0.871 26 H 0.273 0.727 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.444 8.369 18.427 20.290 hybrid contribution -0.368 -0.922 -0.193 1.012 sum -1.812 7.446 18.235 19.780 Atomic orbital electron populations 1.25745 0.96506 0.98620 0.98348 1.23878 0.95405 1.02432 1.02316 1.18982 0.85264 0.97637 0.91088 1.43741 1.58375 1.05273 1.12732 1.18575 1.38768 1.03497 0.85031 0.94307 1.26164 0.96316 0.95185 1.01410 1.69881 1.41477 1.09829 1.33758 0.86054 0.78920 0.79861 0.79588 1.16605 1.21113 1.16391 1.21099 0.79659 0.81839 0.90123 1.90507 1.49197 1.64989 1.42212 1.21762 0.99389 0.90177 0.91986 0.90382 1.60495 1.20009 1.03412 1.47715 1.22722 0.99027 0.95584 0.89564 1.22843 0.98044 0.92342 0.98631 0.86852 1.22228 0.92190 0.98366 1.01641 1.22343 0.97625 0.98540 0.97056 1.22957 0.95157 0.99665 0.98521 1.23285 0.92939 1.00253 0.94827 0.87075 0.72695 0.89893 0.86618 0.91081 0.83425 0.91673 0.90337 0.91170 0.89172 0.91753 0.90351 0.93243 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 19.25 74.32 1.43 -3.84 16 2 C -0.24 -8.89 12.54 31.13 0.39 -8.50 16 3 C 0.19 7.78 4.14 84.57 0.35 8.13 16 4 N -0.48 -24.16 2.16 -645.42 -1.39 -25.55 16 5 C -0.33 -20.26 9.36 84.04 0.79 -19.47 16 6 H 0.04 2.81 7.91 -2.91 -0.02 2.78 16 7 C 0.01 0.64 5.27 84.93 0.45 1.09 16 8 N -0.91 -55.87 13.96 21.66 0.30 -55.57 16 9 Si 0.93 41.71 24.99 68.60 1.71 43.43 16 10 H -0.24 -9.46 6.71 99.48 0.67 -8.79 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.24 -10.07 6.44 99.48 0.64 -9.43 16 13 C 0.48 23.62 5.40 87.66 0.47 24.09 16 14 O -0.59 -34.74 15.61 -3.07 -0.05 -34.79 16 15 C 0.08 2.81 2.62 44.34 0.12 2.93 16 16 H 0.08 2.47 6.51 -2.39 -0.02 2.45 16 17 N -0.69 -22.09 6.53 -492.30 -3.22 -25.30 16 18 C 0.06 1.39 7.07 86.56 0.61 2.00 16 19 C -0.10 -2.06 3.86 -9.40 -0.04 -2.10 16 20 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 21 C -0.11 -2.01 6.38 31.34 0.20 -1.81 16 22 C -0.12 -2.86 6.83 31.66 0.22 -2.65 16 23 C -0.13 -4.33 5.20 32.77 0.17 -4.16 16 24 C -0.09 -2.70 3.25 -8.28 -0.03 -2.73 16 25 H 0.11 2.72 6.87 -2.39 -0.02 2.71 16 26 H 0.26 4.98 7.80 -4.41 -0.03 4.94 16 27 H 0.08 3.51 3.62 -2.39 -0.01 3.50 16 28 H 0.12 3.76 5.35 -2.39 -0.01 3.75 16 29 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.35 9.77 8.90 -89.69 -0.80 8.98 16 31 H 0.07 1.66 7.02 -2.39 -0.02 1.64 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.31 7.04 -2.39 -0.02 1.29 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 2.11 6.88 -2.38 -0.02 2.10 16 38 H 0.04 1.53 7.48 -2.38 -0.02 1.51 16 Total: -1.00 -79.80 299.07 2.66 -77.14 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.17 Total: 27.66 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.13 Total: -7.01 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -4.31 Total: -106.42 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.05 Total: -34.79 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.71 Total: 43.43 kcal Total: -79.80 2.66 -77.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309989583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.683 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds