Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47281 * 2 1 4 4 C 1.38600 * 119.82453 * 89.99781 * 3 2 1 5 5 C 1.37962 * 120.41846 * 180.02562 * 4 3 2 6 6 C 1.38949 * 120.06525 * 0.27566 * 5 4 3 7 7 N 1.38879 * 120.17561 * 179.72981 * 6 5 4 8 8 C 1.40341 * 119.65097 * 359.45347 * 6 5 4 9 9 C 1.47429 * 120.21167 * 180.25617 * 8 6 5 10 10 O 1.21606 * 119.99987 * 354.35876 * 9 8 6 11 11 N 1.34772 * 120.00450 * 174.36500 * 9 8 6 12 12 C 1.46499 * 120.00402 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47285 * 34.99665 * 12 11 9 14 14 C 1.53003 * 109.47005 * 274.99723 * 12 11 9 15 15 C 1.50707 * 109.47427 * 154.99479 * 12 11 9 16 16 H 1.08000 * 119.99480 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99959 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00422 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99761 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46987 * 90.00411 * 19 17 15 21 21 H 1.48503 * 109.47151 * 210.00166 * 19 17 15 22 22 H 1.48497 * 109.47260 * 330.00620 * 19 17 15 23 23 C 1.37749 * 119.81925 * 270.01789 * 3 2 1 24 24 H 1.09001 * 109.46997 * 60.00620 * 1 2 3 25 25 H 1.09004 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47616 * 300.00287 * 1 2 3 27 27 H 1.08996 * 109.47463 * 239.99180 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99380 * 2 1 3 29 29 H 1.07994 * 119.79162 * 359.97438 * 4 3 2 30 30 H 1.08008 * 119.96375 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99548 * 5.63847 * 7 6 5 32 32 H 0.96998 * 119.99784 * 185.64116 * 7 6 5 33 33 H 0.97004 * 119.99981 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.46718 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46653 * 299.99419 * 14 12 11 36 36 H 1.08998 * 109.47033 * 60.00048 * 14 12 11 37 37 H 0.96993 * 119.99951 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.03724 * 359.95616 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0707 1.2024 5 6 2.7214 3.3716 1.2167 6 6 2.9517 4.0417 0.0215 7 7 3.4088 5.3530 0.0332 8 6 2.7255 3.3844 -1.1977 9 6 2.9712 4.0818 -2.4732 10 8 3.2719 5.2601 -2.4738 11 7 2.8624 3.4135 -3.6385 12 6 3.1060 4.1066 -4.9060 13 1 3.8961 4.8452 -4.7702 14 6 1.8238 4.8086 -5.3579 15 6 3.5271 3.1072 -5.9524 16 1 3.6050 2.0603 -5.6986 17 6 3.8118 3.5291 -7.2337 18 7 3.7164 4.8039 -7.5427 19 14 4.3344 2.2903 -8.5304 20 1 3.1331 1.7735 -9.2339 21 1 5.2361 2.9490 -9.5094 22 1 5.0494 1.1636 -7.8790 23 6 2.2603 2.0667 -1.1951 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 2.0795 1.5559 2.1340 30 1 2.8976 3.8711 2.1580 31 1 3.6461 5.7764 0.8731 32 1 3.4907 5.8455 -0.7984 33 1 2.6228 2.4735 -3.6380 34 1 2.0050 5.3240 -6.3012 35 1 1.0338 4.0700 -5.4937 36 1 1.5193 5.5316 -4.6011 37 1 3.9170 5.1007 -8.4441 38 1 2.0799 1.5553 -2.1291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310259418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = -27.316651 kcal Electronic energy + Delta-G solvation = -19467.223051 eV Core-core repulsion = 16501.676452 eV Total energy + Delta-G solvation = -2965.546599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97116 -38.04842 -35.56908 -34.52737 -32.75175 -32.04092 -31.01529 -28.62710 -27.69737 -25.25548 -23.70324 -23.33496 -21.74768 -20.26797 -19.50528 -17.51723 -16.71457 -16.61917 -15.67888 -15.30633 -14.79151 -14.31790 -14.31387 -14.06406 -13.77126 -13.23715 -13.15342 -12.84229 -12.58848 -12.31386 -12.07900 -11.67766 -11.49600 -11.10801 -11.00603 -10.94194 -10.80919 -10.73115 -10.31693 -10.23223 -10.20460 -9.06202 -9.01663 -8.79769 -8.55419 -7.94406 -7.21570 -6.12207 -4.21372 1.24768 1.75933 3.24793 3.31603 3.34045 3.43039 4.11605 4.22950 4.28274 4.40299 4.88886 4.90580 5.12581 5.19349 5.20519 5.42101 5.54490 5.59537 5.64005 5.88059 5.94070 5.99215 6.12012 6.22044 6.37802 6.45250 6.78880 6.83166 6.96669 7.01494 7.15165 7.41350 7.55029 7.69036 7.77484 7.92319 8.11793 8.23822 8.67223 8.78261 9.14029 9.46239 10.93825 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.005202 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.279969 B = 5381.059352 C = 6297.054980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.162 4.162 4 C -0.046 4.046 5 C -0.217 4.217 6 C 0.273 3.727 7 N -0.858 5.858 8 C -0.215 4.215 9 C 0.557 3.443 10 O -0.567 6.567 11 N -0.700 5.700 12 C 0.263 3.737 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.031 4.031 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.387 0.613 32 H 0.419 0.581 33 H 0.389 0.611 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -6.574 15.748 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.164 4.164 4 C -0.066 4.066 5 C -0.240 4.240 6 C 0.161 3.839 7 N -0.406 5.406 8 C -0.223 4.223 9 C 0.345 3.655 10 O -0.450 6.450 11 N -0.346 5.346 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.205 4.205 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.051 4.051 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.214 0.786 32 H 0.263 0.737 33 H 0.223 0.777 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.885 -5.574 15.418 16.848 hybrid contribution 0.257 -0.717 -0.662 1.010 sum -3.628 -6.291 14.755 16.446 Atomic orbital electron populations 1.21780 0.95375 1.01180 1.02163 1.20376 0.95676 0.92751 1.02344 1.19443 1.07141 0.97066 0.92730 1.20802 0.95010 0.93537 0.97210 1.20540 1.10985 0.96558 0.95906 1.17766 0.88684 0.85159 0.92330 1.43516 1.71436 1.11801 1.13819 1.19598 1.14147 0.96065 0.92529 1.18057 0.77377 0.86316 0.83761 1.90316 1.51743 1.16393 1.86500 1.46408 1.67616 1.13627 1.06939 1.18779 0.94397 0.92577 0.78062 0.93257 1.22079 0.97644 0.98754 1.02050 1.21215 1.47278 0.93919 0.94782 0.92070 1.24881 0.95022 0.95441 0.98329 1.69900 1.47944 1.13978 1.20297 0.86442 0.78525 0.81013 0.81094 1.20527 1.21068 1.19833 1.20989 0.93848 0.92412 0.97825 0.92482 0.92883 0.92854 0.91313 0.91637 0.86360 0.86135 0.78599 0.73686 0.77737 0.89110 0.95460 0.96631 0.92585 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.15 0.37 -1.00 16 2 C -0.07 -0.74 6.05 -27.89 -0.17 -0.91 16 3 C -0.16 -2.02 5.13 -104.67 -0.54 -2.55 16 4 C -0.05 -0.54 9.67 -39.55 -0.38 -0.93 16 5 C -0.22 -2.75 9.88 -39.42 -0.39 -3.14 16 6 C 0.27 4.25 6.76 -83.61 -0.57 3.68 16 7 N -0.86 -12.68 8.93 32.54 0.29 -12.39 16 8 C -0.21 -3.73 5.89 -104.80 -0.62 -4.34 16 9 C 0.56 11.74 7.71 -12.52 -0.10 11.64 16 10 O -0.57 -13.31 13.31 5.27 0.07 -13.24 16 11 N -0.70 -15.13 5.02 -56.01 -0.28 -15.41 16 12 C 0.26 6.79 2.56 -69.08 -0.18 6.62 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 15 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.88 -24.95 11.32 55.43 0.63 -24.32 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.03 -0.46 9.16 -39.20 -0.36 -0.82 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.39 4.32 8.84 -40.82 -0.36 3.96 16 32 H 0.42 7.31 5.34 -40.94 -0.22 7.09 16 33 H 0.39 7.40 6.60 -40.82 -0.27 7.13 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.12 1.68 6.45 -52.49 -0.34 1.34 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -30.12 315.35 -7.77 -37.90 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.24 Total: 14.98 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.98 Total: -7.95 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.64 Total: -52.12 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.12 -7.77 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310259418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.581 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds