Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47281 * 2 1 4 4 C 1.38600 * 119.82453 * 89.99781 * 3 2 1 5 5 C 1.37962 * 120.41846 * 180.02562 * 4 3 2 6 6 C 1.38949 * 120.06525 * 0.27566 * 5 4 3 7 7 N 1.38879 * 120.17561 * 179.72981 * 6 5 4 8 8 C 1.40341 * 119.65097 * 359.45347 * 6 5 4 9 9 C 1.47429 * 120.21167 * 180.25617 * 8 6 5 10 10 O 1.21606 * 119.99987 * 354.35876 * 9 8 6 11 11 N 1.34772 * 120.00450 * 174.36500 * 9 8 6 12 12 C 1.46499 * 120.00402 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47285 * 34.99665 * 12 11 9 14 14 C 1.53003 * 109.47005 * 274.99723 * 12 11 9 15 15 C 1.50707 * 109.47427 * 154.99479 * 12 11 9 16 16 H 1.08000 * 119.99480 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99959 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00422 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99761 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46987 * 90.00411 * 19 17 15 21 21 H 1.48503 * 109.47151 * 210.00166 * 19 17 15 22 22 H 1.48497 * 109.47260 * 330.00620 * 19 17 15 23 23 C 1.37749 * 119.81925 * 270.01789 * 3 2 1 24 24 H 1.09001 * 109.46997 * 60.00620 * 1 2 3 25 25 H 1.09004 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47616 * 300.00287 * 1 2 3 27 27 H 1.08996 * 109.47463 * 239.99180 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99380 * 2 1 3 29 29 H 1.07994 * 119.79162 * 359.97438 * 4 3 2 30 30 H 1.08008 * 119.96375 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99548 * 5.63847 * 7 6 5 32 32 H 0.96998 * 119.99784 * 185.64116 * 7 6 5 33 33 H 0.97004 * 119.99981 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.46718 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46653 * 299.99419 * 14 12 11 36 36 H 1.08998 * 109.47033 * 60.00048 * 14 12 11 37 37 H 0.96993 * 119.99951 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.03724 * 359.95616 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0707 1.2024 5 6 2.7214 3.3716 1.2167 6 6 2.9517 4.0417 0.0215 7 7 3.4088 5.3530 0.0332 8 6 2.7255 3.3844 -1.1977 9 6 2.9712 4.0818 -2.4732 10 8 3.2719 5.2601 -2.4738 11 7 2.8624 3.4135 -3.6385 12 6 3.1060 4.1066 -4.9060 13 1 3.8961 4.8452 -4.7702 14 6 1.8238 4.8086 -5.3579 15 6 3.5271 3.1072 -5.9524 16 1 3.6050 2.0603 -5.6986 17 6 3.8118 3.5291 -7.2337 18 7 3.7164 4.8039 -7.5427 19 14 4.3344 2.2903 -8.5304 20 1 3.1331 1.7735 -9.2339 21 1 5.2361 2.9490 -9.5094 22 1 5.0494 1.1636 -7.8790 23 6 2.2603 2.0667 -1.1951 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 2.0795 1.5559 2.1340 30 1 2.8976 3.8711 2.1580 31 1 3.6461 5.7764 0.8731 32 1 3.4907 5.8455 -0.7984 33 1 2.6228 2.4735 -3.6380 34 1 2.0050 5.3240 -6.3012 35 1 1.0338 4.0700 -5.4937 36 1 1.5193 5.5316 -4.6011 37 1 3.9170 5.1007 -8.4441 38 1 2.0799 1.5553 -2.1291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310259418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = -46.850571 kcal Electronic energy + Delta-G solvation = -19468.070106 eV Core-core repulsion = 16501.676452 eV Total energy + Delta-G solvation = -2966.393654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31320 -39.45453 -37.03394 -36.02764 -34.47385 -33.18538 -32.35183 -30.37518 -28.74647 -27.36102 -25.02937 -24.23061 -23.22219 -21.64901 -21.17456 -19.06178 -18.09658 -17.74623 -17.30734 -17.09373 -16.30509 -15.92018 -15.46414 -15.24976 -14.91873 -14.58825 -14.39426 -14.24890 -13.93348 -13.70600 -13.52803 -13.03464 -12.93440 -12.84456 -12.73634 -12.50547 -12.29511 -12.14346 -11.81752 -11.62511 -11.23362 -11.12414 -10.69955 -10.57159 -10.00501 -9.69245 -8.34129 -8.18826 -6.36579 0.08811 0.70245 1.44329 1.45252 1.55986 2.03357 2.35084 2.64014 3.03038 3.11073 3.12147 3.88019 3.94325 4.03561 4.36265 4.50736 4.57879 4.68151 4.71430 4.73829 4.89809 4.94704 5.06474 5.07000 5.19480 5.22349 5.28561 5.40885 5.45538 5.51549 5.57950 5.66777 5.80581 5.88548 6.01502 6.07411 6.60759 6.70826 6.90260 7.05033 7.31498 7.54116 8.87608 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.005202 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.279969 B = 5381.059352 C = 6297.054980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.158 4.158 4 C -0.035 4.035 5 C -0.211 4.211 6 C 0.255 3.745 7 N -0.861 5.861 8 C -0.247 4.247 9 C 0.550 3.450 10 O -0.601 6.601 11 N -0.700 5.700 12 C 0.271 3.729 13 H 0.001 0.999 14 C -0.132 4.132 15 C -0.549 4.549 16 H 0.071 0.929 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.040 4.040 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.403 0.597 32 H 0.407 0.593 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -9.254 17.677 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.054 4.054 5 C -0.234 4.234 6 C 0.144 3.856 7 N -0.408 5.408 8 C -0.256 4.256 9 C 0.340 3.660 10 O -0.486 6.486 11 N -0.347 5.347 12 C 0.167 3.833 13 H 0.019 0.981 14 C -0.191 4.191 15 C -0.587 4.587 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.059 4.059 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.232 0.768 32 H 0.247 0.753 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.407 -8.287 17.402 19.772 hybrid contribution 0.401 0.122 -1.125 1.200 sum -4.005 -8.164 16.278 18.646 Atomic orbital electron populations 1.21769 0.94840 1.02096 1.01683 1.20444 0.96019 0.91055 1.03520 1.19796 1.05803 0.98238 0.92144 1.21291 0.92642 0.93026 0.98416 1.20897 1.09747 0.96941 0.95770 1.18085 0.89203 0.85459 0.92902 1.43450 1.71503 1.11839 1.13968 1.19406 1.17737 0.97405 0.91011 1.18744 0.76276 0.86118 0.84818 1.90300 1.53082 1.17973 1.87212 1.46148 1.68378 1.14133 1.06038 1.18383 0.93029 0.91941 0.79909 0.98131 1.21894 0.97832 0.98672 1.00711 1.21520 1.47480 0.94421 0.95238 0.91071 1.25801 0.94819 0.97290 1.00560 1.70048 1.48625 1.15975 1.20850 0.85316 0.78291 0.78527 0.78033 1.19503 1.21087 1.18912 1.21092 0.94103 0.91548 0.99189 0.93964 0.91325 0.92362 0.91290 0.89394 0.82493 0.83162 0.76764 0.75257 0.76268 0.91262 0.94254 0.96974 0.92487 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.07 -1.20 6.05 29.85 0.18 -1.02 16 3 C -0.16 -3.48 5.13 -19.89 -0.10 -3.58 16 4 C -0.03 -0.67 9.67 22.29 0.22 -0.46 16 5 C -0.21 -4.69 9.88 22.37 0.22 -4.47 16 6 C 0.26 7.76 6.76 38.71 0.26 8.02 16 7 N -0.86 -25.55 8.93 -50.95 -0.46 -26.00 16 8 C -0.25 -8.62 5.89 -19.98 -0.12 -8.73 16 9 C 0.55 24.16 7.71 86.67 0.67 24.83 16 10 O -0.60 -29.87 13.31 -4.05 -0.05 -29.92 16 11 N -0.70 -31.36 5.02 -449.36 -2.25 -33.62 16 12 C 0.27 14.57 2.56 44.25 0.11 14.68 16 13 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 14 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 15 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.02 0.84 5.30 84.65 0.45 1.29 16 18 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 19 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.04 -1.14 9.16 22.52 0.21 -0.94 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 28 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.40 8.74 8.84 -92.71 -0.82 7.92 16 32 H 0.41 14.80 5.34 -94.61 -0.51 14.29 16 33 H 0.40 15.60 6.60 -92.71 -0.61 14.99 16 34 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.13 3.38 6.45 -2.91 -0.02 3.36 16 Total: -1.00 -67.54 315.35 2.36 -65.18 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -0.84 Total: 40.55 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.70 Total: -7.77 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.47 Total: -112.54 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -67.54 2.36 -65.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310259418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.334 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds