Wall clock time and date at job start Mon Mar 30 2020 04:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47064 * 2 1 4 4 C 1.38616 * 119.81806 * 270.02383 * 3 2 1 5 5 C 1.37959 * 120.41924 * 180.02562 * 4 3 2 6 6 C 1.38960 * 120.06280 * 359.71639 * 5 4 3 7 7 N 1.38867 * 120.17731 * 180.30348 * 6 5 4 8 8 C 1.40352 * 119.64839 * 0.53194 * 6 5 4 9 9 C 1.47426 * 120.20744 * 179.74549 * 8 6 5 10 10 O 1.21607 * 120.00096 * 353.79810 * 9 8 6 11 11 N 1.34775 * 120.00414 * 173.51692 * 9 8 6 12 12 C 1.46492 * 120.00465 * 180.27688 * 11 9 8 13 13 H 1.09004 * 109.47172 * 325.00325 * 12 11 9 14 14 C 1.52992 * 109.47451 * 85.00213 * 12 11 9 15 15 C 1.50702 * 109.47408 * 205.00519 * 12 11 9 16 16 H 1.07997 * 119.99799 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00234 * 179.97438 * 15 12 11 18 18 N 1.31504 * 119.99921 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99974 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47073 * 89.99906 * 19 17 15 21 21 H 1.48494 * 109.47415 * 209.99838 * 19 17 15 22 22 H 1.48498 * 109.47159 * 330.00459 * 19 17 15 23 23 C 1.37748 * 119.82445 * 89.99474 * 3 2 1 24 24 H 1.09004 * 109.46758 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47095 * 300.00186 * 1 2 3 26 26 H 1.08998 * 109.47177 * 60.00203 * 1 2 3 27 27 H 1.08998 * 109.47095 * 239.99814 * 2 1 3 28 28 H 1.08998 * 109.47177 * 119.99797 * 2 1 3 29 29 H 1.07995 * 119.78795 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.96453 * 180.02562 * 5 4 3 31 31 H 0.97007 * 120.00424 * 185.69351 * 7 6 5 32 32 H 0.97001 * 119.99976 * 5.68660 * 7 6 5 33 33 H 0.97004 * 119.99659 * 0.28232 * 11 9 8 34 34 H 1.09001 * 109.47554 * 59.99753 * 14 12 11 35 35 H 1.08997 * 109.47633 * 180.02562 * 14 12 11 36 36 H 1.09006 * 109.47170 * 300.00353 * 14 12 11 37 37 H 0.97010 * 120.00271 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.03425 * 0.02571 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2616 2.0709 -1.2026 5 6 2.7219 3.3713 -1.2171 6 6 2.9535 4.0411 -0.0218 7 7 3.4109 5.3523 -0.0336 8 6 2.7274 3.3839 1.1975 9 6 2.9744 4.0809 2.4729 10 8 3.4810 5.1864 2.4734 11 7 2.6335 3.4954 3.6379 12 6 2.8734 4.1905 4.9049 13 1 3.7933 4.7708 4.8325 14 6 1.7013 5.1279 5.2022 15 6 3.0029 3.1803 6.0156 16 1 2.9149 2.1258 5.7994 17 6 3.2338 3.6021 7.3078 18 7 3.3415 4.8860 7.5710 19 14 3.3936 2.3498 8.6846 20 1 4.8163 1.9480 8.8257 21 1 2.9204 2.9504 9.9576 22 1 2.5714 1.1552 8.3652 23 6 2.2606 2.0668 1.1950 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0787 1.5560 -2.1342 30 1 2.8977 3.8709 -2.1583 31 1 3.6504 5.7900 0.7983 32 1 3.4910 5.8305 -0.8738 33 1 2.2294 2.6135 3.6375 34 1 0.7814 4.5478 5.2747 35 1 1.8800 5.6455 6.1447 36 1 1.6077 5.8587 4.3989 37 1 3.5035 5.1829 8.4802 38 1 2.0802 1.5554 2.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310259419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:45 Heat of formation + Delta-G solvation = -27.379795 kcal Electronic energy + Delta-G solvation = -19473.062194 eV Core-core repulsion = 16507.512857 eV Total energy + Delta-G solvation = -2965.549338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97066 -38.04767 -35.56873 -34.52787 -32.75101 -32.04167 -31.01668 -28.62739 -27.69572 -25.25648 -23.70435 -23.33294 -21.74145 -20.27295 -19.50594 -17.51780 -16.71923 -16.62260 -15.67657 -15.29530 -14.78662 -14.39602 -14.22085 -14.06209 -13.76578 -13.28176 -13.17360 -12.81365 -12.57282 -12.31499 -12.09057 -11.67466 -11.49346 -11.08473 -11.00170 -10.97541 -10.80493 -10.73324 -10.30221 -10.23275 -10.20957 -9.07073 -9.01716 -8.79832 -8.54799 -7.94497 -7.21675 -6.12260 -4.21406 1.24767 1.75928 3.25101 3.31652 3.33584 3.42898 4.11783 4.22287 4.28331 4.40527 4.88989 4.90689 5.12761 5.19448 5.20483 5.42363 5.54726 5.59773 5.64023 5.88321 5.94315 5.99318 6.12162 6.22417 6.37749 6.45302 6.78972 6.83127 6.96493 7.01472 7.15227 7.41301 7.55015 7.68932 7.77329 7.92176 8.11615 8.23506 8.67205 8.78173 9.13982 9.46192 10.93786 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005275 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.506197 B = 5306.436966 C = 6320.291120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.162 4.162 4 C -0.046 4.046 5 C -0.217 4.217 6 C 0.273 3.727 7 N -0.858 5.858 8 C -0.215 4.215 9 C 0.557 3.443 10 O -0.567 6.567 11 N -0.700 5.700 12 C 0.263 3.737 13 H 0.050 0.950 14 C -0.146 4.146 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.031 4.031 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.419 0.581 32 H 0.387 0.613 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -6.471 -15.867 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.164 4.164 4 C -0.066 4.066 5 C -0.240 4.240 6 C 0.161 3.839 7 N -0.406 5.406 8 C -0.224 4.224 9 C 0.345 3.655 10 O -0.450 6.450 11 N -0.346 5.346 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.205 4.205 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.051 4.051 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.263 0.737 32 H 0.214 0.786 33 H 0.223 0.777 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.430 -5.525 -15.537 16.843 hybrid contribution -0.006 -0.685 0.697 0.978 sum -3.436 -6.210 -14.839 16.449 Atomic orbital electron populations 1.21782 0.95358 1.01187 1.02175 1.20379 0.95690 0.92747 1.02334 1.19447 1.07143 0.97069 0.92726 1.20806 0.94971 0.93565 0.97210 1.20540 1.11176 0.96386 0.95903 1.17767 0.88635 0.85197 0.92332 1.43514 1.71609 1.11680 1.13770 1.19596 1.13802 0.96441 0.92518 1.18059 0.78357 0.85318 0.83776 1.90317 1.47167 1.21024 1.86448 1.46408 1.60480 1.20739 1.06965 1.18773 0.95361 0.91590 0.78099 0.93254 1.22071 0.97921 0.98677 1.01816 1.21213 1.50972 0.92844 0.92180 0.92073 1.24880 0.94700 0.95462 0.98622 1.69901 1.48102 1.13524 1.20580 0.86443 0.78405 0.81096 0.81127 1.20552 1.21071 1.19818 1.20991 0.93678 0.92553 0.97838 0.92885 0.92458 0.92850 0.91645 0.91322 0.86360 0.86137 0.73686 0.78600 0.77737 0.95452 0.89126 0.96661 0.92584 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.01 16 2 C -0.07 -0.74 6.05 -27.88 -0.17 -0.91 16 3 C -0.16 -2.02 5.13 -104.66 -0.54 -2.56 16 4 C -0.05 -0.54 9.68 -39.54 -0.38 -0.93 16 5 C -0.22 -2.75 9.88 -39.42 -0.39 -3.14 16 6 C 0.27 4.24 6.76 -83.61 -0.57 3.68 16 7 N -0.86 -12.65 8.93 32.55 0.29 -12.36 16 8 C -0.22 -3.73 5.89 -104.80 -0.62 -4.35 16 9 C 0.56 11.74 7.71 -12.52 -0.10 11.64 16 10 O -0.57 -13.31 13.31 5.27 0.07 -13.24 16 11 N -0.70 -15.13 5.02 -56.02 -0.28 -15.41 16 12 C 0.26 6.79 2.56 -69.09 -0.18 6.61 16 13 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.69 9.26 37.15 0.34 -3.34 16 15 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 18 N -0.88 -24.95 11.32 55.43 0.63 -24.32 16 19 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 C -0.03 -0.46 9.16 -39.20 -0.36 -0.82 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 28 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.42 7.30 5.34 -40.93 -0.22 7.08 16 32 H 0.39 4.31 8.84 -40.82 -0.36 3.95 16 33 H 0.39 7.40 6.61 -40.82 -0.27 7.13 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.12 1.69 6.45 -52.49 -0.34 1.36 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.11 315.37 -7.77 -37.88 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.24 Total: 14.97 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.98 Total: -7.95 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.64 Total: -52.09 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.11 -7.77 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310259419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.499 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds