Wall clock time and date at job start Mon Mar 30 2020 04:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47064 * 2 1 4 4 C 1.38616 * 119.81806 * 270.02383 * 3 2 1 5 5 C 1.37959 * 120.41924 * 180.02562 * 4 3 2 6 6 C 1.38960 * 120.06280 * 359.71639 * 5 4 3 7 7 N 1.38867 * 120.17731 * 180.30348 * 6 5 4 8 8 C 1.40352 * 119.64839 * 0.53194 * 6 5 4 9 9 C 1.47426 * 120.20744 * 179.74549 * 8 6 5 10 10 O 1.21607 * 120.00096 * 353.79810 * 9 8 6 11 11 N 1.34775 * 120.00414 * 173.51692 * 9 8 6 12 12 C 1.46492 * 120.00465 * 180.27688 * 11 9 8 13 13 H 1.09004 * 109.47172 * 325.00325 * 12 11 9 14 14 C 1.52992 * 109.47451 * 85.00213 * 12 11 9 15 15 C 1.50702 * 109.47408 * 205.00519 * 12 11 9 16 16 H 1.07997 * 119.99799 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00234 * 179.97438 * 15 12 11 18 18 N 1.31504 * 119.99921 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99974 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47073 * 89.99906 * 19 17 15 21 21 H 1.48494 * 109.47415 * 209.99838 * 19 17 15 22 22 H 1.48498 * 109.47159 * 330.00459 * 19 17 15 23 23 C 1.37748 * 119.82445 * 89.99474 * 3 2 1 24 24 H 1.09004 * 109.46758 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47095 * 300.00186 * 1 2 3 26 26 H 1.08998 * 109.47177 * 60.00203 * 1 2 3 27 27 H 1.08998 * 109.47095 * 239.99814 * 2 1 3 28 28 H 1.08998 * 109.47177 * 119.99797 * 2 1 3 29 29 H 1.07995 * 119.78795 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.96453 * 180.02562 * 5 4 3 31 31 H 0.97007 * 120.00424 * 185.69351 * 7 6 5 32 32 H 0.97001 * 119.99976 * 5.68660 * 7 6 5 33 33 H 0.97004 * 119.99659 * 0.28232 * 11 9 8 34 34 H 1.09001 * 109.47554 * 59.99753 * 14 12 11 35 35 H 1.08997 * 109.47633 * 180.02562 * 14 12 11 36 36 H 1.09006 * 109.47170 * 300.00353 * 14 12 11 37 37 H 0.97010 * 120.00271 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.03425 * 0.02571 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2616 2.0709 -1.2026 5 6 2.7219 3.3713 -1.2171 6 6 2.9535 4.0411 -0.0218 7 7 3.4109 5.3523 -0.0336 8 6 2.7274 3.3839 1.1975 9 6 2.9744 4.0809 2.4729 10 8 3.4810 5.1864 2.4734 11 7 2.6335 3.4954 3.6379 12 6 2.8734 4.1905 4.9049 13 1 3.7933 4.7708 4.8325 14 6 1.7013 5.1279 5.2022 15 6 3.0029 3.1803 6.0156 16 1 2.9149 2.1258 5.7994 17 6 3.2338 3.6021 7.3078 18 7 3.3415 4.8860 7.5710 19 14 3.3936 2.3498 8.6846 20 1 4.8163 1.9480 8.8257 21 1 2.9204 2.9504 9.9576 22 1 2.5714 1.1552 8.3652 23 6 2.2606 2.0668 1.1950 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0787 1.5560 -2.1342 30 1 2.8977 3.8709 -2.1583 31 1 3.6504 5.7900 0.7983 32 1 3.4910 5.8305 -0.8738 33 1 2.2294 2.6135 3.6375 34 1 0.7814 4.5478 5.2747 35 1 1.8800 5.6455 6.1447 36 1 1.6077 5.8587 4.3989 37 1 3.5035 5.1829 8.4802 38 1 2.0802 1.5554 2.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310259419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:44 Heat of formation + Delta-G solvation = -46.897308 kcal Electronic energy + Delta-G solvation = -19473.908537 eV Core-core repulsion = 16507.512857 eV Total energy + Delta-G solvation = -2966.395680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31310 -39.45405 -37.03339 -36.02844 -34.47328 -33.18589 -32.35316 -30.37522 -28.74468 -27.36134 -25.03136 -24.22902 -23.21554 -21.65757 -21.17295 -19.06271 -18.09708 -17.75599 -17.30893 -17.07130 -16.30112 -15.91783 -15.46556 -15.27053 -14.90809 -14.59290 -14.40861 -14.22964 -13.93405 -13.72666 -13.49793 -13.02729 -12.93326 -12.87279 -12.76143 -12.49116 -12.28136 -12.12709 -11.81281 -11.62327 -11.24136 -11.13374 -10.69899 -10.56757 -10.00415 -9.69501 -8.34135 -8.18784 -6.36524 0.08776 0.70218 1.44505 1.45134 1.56077 2.03294 2.34941 2.64076 3.03085 3.11294 3.11951 3.87969 3.94326 4.03593 4.36267 4.50655 4.57952 4.68288 4.71371 4.73986 4.89561 4.94691 5.06589 5.07055 5.19539 5.22514 5.28679 5.40806 5.45572 5.51837 5.57968 5.66631 5.80607 5.88534 6.01438 6.07298 6.60684 6.70838 6.90217 7.04956 7.31498 7.54052 8.87652 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005275 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.506197 B = 5306.436966 C = 6320.291120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.158 4.158 4 C -0.035 4.035 5 C -0.211 4.211 6 C 0.256 3.744 7 N -0.861 5.861 8 C -0.247 4.247 9 C 0.550 3.450 10 O -0.601 6.601 11 N -0.700 5.700 12 C 0.271 3.729 13 H 0.001 0.999 14 C -0.132 4.132 15 C -0.549 4.549 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.974 3.026 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.040 4.040 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.407 0.593 32 H 0.403 0.597 33 H 0.401 0.599 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -9.088 -17.792 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.054 4.054 5 C -0.234 4.234 6 C 0.144 3.856 7 N -0.407 5.407 8 C -0.256 4.256 9 C 0.340 3.660 10 O -0.486 6.486 11 N -0.347 5.347 12 C 0.167 3.833 13 H 0.019 0.981 14 C -0.191 4.191 15 C -0.587 4.587 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.059 4.059 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.247 0.753 32 H 0.232 0.768 33 H 0.237 0.763 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.257 -8.172 -17.518 19.794 hybrid contribution 0.250 0.131 1.157 1.191 sum -4.007 -8.041 -16.361 18.665 Atomic orbital electron populations 1.21771 0.94791 1.02097 1.01728 1.20446 0.96062 0.91058 1.03476 1.19798 1.05809 0.98231 0.92144 1.21294 0.92601 0.93064 0.98405 1.20898 1.09917 0.96767 0.95773 1.18083 0.89130 0.85516 0.92891 1.43446 1.71539 1.11833 1.13924 1.19402 1.17387 0.97767 0.91007 1.18746 0.77301 0.85080 0.84829 1.90302 1.48484 1.22623 1.87164 1.46148 1.61278 1.21212 1.06055 1.18379 0.93330 0.91535 0.80030 0.98136 1.21886 0.98256 0.98470 1.00452 1.21524 1.51097 0.93393 0.92654 0.91026 1.25802 0.94104 0.97369 1.01203 1.70048 1.48713 1.15556 1.21183 0.85321 0.78428 0.78801 0.77645 1.20325 1.20792 1.18365 1.21089 0.93949 0.91720 0.99182 0.91352 0.93904 0.92329 0.89411 0.91358 0.82489 0.83151 0.75256 0.76755 0.76273 0.94281 0.91275 0.96978 0.92489 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.07 -1.20 6.05 29.85 0.18 -1.02 16 3 C -0.16 -3.49 5.13 -19.89 -0.10 -3.59 16 4 C -0.03 -0.67 9.68 22.29 0.22 -0.45 16 5 C -0.21 -4.68 9.88 22.38 0.22 -4.46 16 6 C 0.26 7.75 6.76 38.72 0.26 8.01 16 7 N -0.86 -25.46 8.93 -50.94 -0.46 -25.92 16 8 C -0.25 -8.62 5.89 -19.98 -0.12 -8.73 16 9 C 0.55 24.16 7.71 86.66 0.67 24.83 16 10 O -0.60 -29.87 13.31 -4.05 -0.05 -29.92 16 11 N -0.70 -31.36 5.02 -449.39 -2.26 -33.62 16 12 C 0.27 14.56 2.56 44.24 0.11 14.68 16 13 H 0.00 0.05 7.58 -2.38 -0.02 0.03 16 14 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 15 C -0.55 -29.78 8.73 25.60 0.22 -29.55 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.02 0.84 5.30 84.66 0.45 1.28 16 18 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 19 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.04 -1.15 9.16 22.51 0.21 -0.94 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 29 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.41 14.77 5.34 -94.54 -0.51 14.26 16 32 H 0.40 8.69 8.84 -92.71 -0.82 7.87 16 33 H 0.40 15.62 6.61 -92.71 -0.61 15.00 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 36 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.13 3.39 6.45 -2.91 -0.02 3.37 16 Total: -1.00 -67.51 315.37 2.36 -65.15 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -0.84 Total: 40.52 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 3.70 Total: -7.76 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -2.47 Total: -112.47 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.51 2.36 -65.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310259419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.256 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds